Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 2.6e-146 522.7 422 100.0
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 1.3e-132 477.2 422 89.8
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 5.3e-131 471.9 422 89.1
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 7.6e-130 468.0 422 92.2
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 1.4e-123 447.2 422 89.8
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 1.3e-105 387.5 411 78.3
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 2.4e-99 366.7 399 77.7
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 3.5e-98 362.8 404 80.0
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 3.5e-98 362.8 405 75.6
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 6.5e-97 358.6 402 75.4
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 2.7e-95 353.2 413 72.9
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 4.7e-95 352.4 404 78.7
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 1.0e-94 351.3 404 75.5
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 2.3e-94 350.1 404 75.2
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 4.0e-94 349.4 411 74.7
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 8.8e-94 348.2 405 78.8
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 5.7e-93 345.5 405 75.8
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 9.8e-93 344.7 423 72.8
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 2.2e-92 343.6 415 72.8
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 1.8e-91 340.5 399 74.4
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 3.1e-91 339.7 424 76.7
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 7.0e-91 338.6 407 76.9
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 9.1e-91 338.2 404 73.8
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 2.7e-90 336.7 405 78.8
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 1.3e-89 334.3 399 75.2
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 1.3e-89 334.3 466 59.9
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 3.8e-89 332.8 406 73.9
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 8.6e-89 331.6 419 73.7
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 8.6e-89 331.6 422 73.0
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 1.5e-88 330.9 404 74.5
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.5e-88 330.9 406 72.9
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.5e-88 330.9 406 72.9
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 1.9e-88 330.5 404 72.5
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 1.9e-88 330.5 404 72.5
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 3.3e-88 329.7 406 74.1
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 3.3e-88 329.7 413 75.8
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 5.5e-88 328.9 405 77.0
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 7.2e-88 328.6 407 75.4
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 9.5e-88 328.2 404 78.5
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 1.2e-87 327.8 402 77.4
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 1.6e-87 327.4 411 75.9
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.6e-87 327.4 404 77.2
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 2.1e-87 327.0 405 76.3
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 3.6e-87 326.2 407 76.7
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 3.6e-87 326.2 413 75.5
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.3e-86 323.6 404 76.5
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 4.0e-86 322.8 405 77.5
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 5.2e-86 322.4 402 76.4
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 6.8e-86 322.0 403 72.0
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 1.5e-85 320.9 408 73.5
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 2.0e-85 320.5 409 73.8
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 4.4e-85 319.3 402 68.4
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 4.4e-85 319.3 390 75.6
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 1.7e-84 317.4 415 75.7
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 2.2e-84 317.0 399 77.4
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.8e-84 316.6 415 73.3
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.4e-83 314.3 404 70.0
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 7.0e-83 312.0 398 75.4
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 1.6e-82 310.8 405 75.1
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 2.7e-82 310.1 405 71.4
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 3.5e-82 309.7 407 71.3
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 4.5e-82 309.3 404 75.5
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 5.9e-82 308.9 407 74.7
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 2.3e-81 307.0 407 74.4
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 2.3e-81 307.0 405 75.6
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 2.9e-81 306.6 405 71.4
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 8.6e-81 305.1 404 68.6
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 3.3e-80 303.1 405 71.4
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 1.2e-79 301.2 406 75.6
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 2.8e-79 300.1 399 70.7
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 4.7e-79 299.3 404 70.8
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 4.0e-78 296.2 402 69.4
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 5.8e-77 292.4 407 69.5
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 9.8e-77 291.6 442 56.3
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 1.6e-74 284.3 414 65.7
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 6.0e-74 282.3 400 67.0
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.3e-73 280.4 404 69.6
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 8.6e-73 278.5 406 68.0
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 1.9e-72 277.3 405 67.7
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 1.2e-71 274.6 401 69.8
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 2.1e-66 257.3 404 70.0
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 2.1e-66 257.3 398 60.3
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 1.3e-65 254.6 397 71.5
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 1.3e-65 254.6 538 48.0
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 6.6e-65 252.3 404 66.3
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 1.9e-64 250.8 403 70.2
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 1.6e-63 247.7 403 72.2
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 3.1e-62 243.4 398 70.6
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 5.2e-62 242.7 416 56.2
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 3.4e-61 240.0 415 67.2
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 4.1e-59 233.0 409 63.8
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 2.7e-58 230.3 400 69.5
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 3.5e-58 229.9 403 69.5
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 7.6e-53 212.2 414 54.6
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 3.5e-50 203.4 182 67.0
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 1.7e-49 201.1 400 64.5
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 3.0e-49 200.3 392 67.6
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 2.5e-48 197.2 180 66.7
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 5.3e-46 189.5 422 64.9
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 4.4e-45 186.4 403 66.5
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 8.4e-44 182.2 178 56.7
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 2.4e-43 180.6 401 63.1
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 5.3e-38 162.9 106 74.5
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 5.3e-38 162.9 106 74.5
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.0e-37 161.0 181 47.0
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 1.1e-35 155.2 111 72.1
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 1.3e-33 148.3 153 58.2
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 3.9e-33 146.7 398 61.6
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 1.3e-31 141.7 109 67.9
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 2.8e-31 140.6 106 64.2
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 9.9e-29 132.1 393 41.2
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 2.9e-28 130.6 392 58.9
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 1.1e-19 102.1 70 65.7
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 1.7e-12 78.2 78 75.6
Haze_04113 Corylus avellana HOM05D002125 ORTHO05D002105 2.0e-08 64.7 103 34.0
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 3.3e-08 63.9 140 32.1
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 9.7e-08 62.4 140 31.4
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 2.2e-07 61.2 87 57.5
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 2.2e-07 61.2 140 47.9
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 2.2e-07 61.2 87 60.9
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 2.8e-07 60.8 140 31.4
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 6.3e-07 59.7 87 66.7
Cfa006657 Carpinus fangiana HOM05D002125 ORTHO05D002105 3.1e-06 57.4 123 28.5
Sed0004605 Sechium edule HOM05D001818 ORTHO05D001780 3.1e-06 57.4 146 28.1
CBR_g11992 Chara braunii HOM05D002125 ORTHO05D008387 5.3e-06 56.6 70 44.3


User provided reference genes

Program Settings