Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.2e-134 482.3 240 100.0
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 3.6e-100 368.6 216 86.1
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 1.1e-96 357.1 211 83.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 3.4e-90 335.5 208 78.4
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 4.3e-77 292.0 187 74.9
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.2e-75 285.0 187 73.3
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 8.9e-75 284.3 187 74.9
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.0e-74 283.1 187 71.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 3.4e-74 282.3 203 69.5
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 3.4e-74 282.3 188 73.9
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 7.5e-74 281.2 187 73.8
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.3e-73 280.4 186 72.0
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.7e-73 280.0 184 75.5
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 3.7e-73 278.9 190 72.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 5.4e-72 275.0 186 71.5
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 2.7e-71 272.7 187 69.5
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 3.5e-71 272.3 188 71.3
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 6.0e-71 271.6 187 68.4
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 6.0e-71 271.6 187 71.7
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.0e-70 270.8 186 71.0
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.7e-70 270.0 198 68.2
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 2.3e-70 269.6 186 71.0
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 6.6e-70 268.1 189 70.4
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 1.1e-69 267.3 186 69.9
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 1.5e-69 266.9 190 68.9
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.9e-69 266.5 187 68.4
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.5e-69 266.2 188 68.6
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 5.6e-69 265.0 188 69.7
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 9.5e-69 264.2 188 69.7
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 1.6e-68 263.5 184 71.2
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.1e-68 263.1 186 66.7
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.1e-68 263.1 188 69.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.8e-68 262.7 188 68.1
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.6e-68 262.3 189 69.8
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.6e-68 262.3 188 68.1
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 3.6e-68 262.3 188 68.1
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 4.7e-68 261.9 190 67.9
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.1e-67 260.8 185 69.7
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 1.1e-67 260.8 189 71.4
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.1e-67 260.8 195 66.2
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.8e-67 260.0 189 69.8
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.8e-67 260.0 189 69.3
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.8e-67 260.0 189 69.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.3e-67 259.6 194 64.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 2.3e-67 259.6 189 69.8
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 3.1e-67 259.2 187 69.0
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 3.1e-67 259.2 186 68.3
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 4.0e-67 258.8 187 67.9
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 4.0e-67 258.8 186 65.6
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 8.9e-67 257.7 190 66.8
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.2e-66 257.3 189 68.8
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.2e-66 257.3 186 68.8
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.5e-66 256.9 187 65.2
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.0e-66 256.5 186 67.2
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.0e-66 256.5 186 67.2
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 2.6e-66 256.1 187 66.8
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 4.4e-66 255.4 186 68.3
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 5.8e-66 255.0 189 68.3
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 5.8e-66 255.0 187 66.8
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 7.6e-66 254.6 188 67.0
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 2.2e-65 253.1 188 67.0
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 4.9e-65 251.9 176 72.7
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 4.9e-65 251.9 186 66.7
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 8.4e-65 251.1 196 63.3
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 1.1e-64 250.8 198 63.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.1e-64 250.8 188 64.9
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.4e-64 250.4 180 67.2
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.9e-64 250.0 186 66.7
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.4e-64 248.4 188 64.9
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 9.2e-64 247.7 187 66.3
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.2e-63 247.3 187 64.2
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 2.7e-63 246.1 190 64.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.0e-63 245.0 188 64.4
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.0e-62 244.2 178 67.4
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.3e-62 243.8 193 64.2
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.7e-62 243.4 196 61.7
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 6.6e-62 241.5 190 62.1
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.1e-61 240.7 186 61.8
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.8e-60 236.1 169 66.9
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 4.7e-60 235.3 189 63.5
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.1e-59 234.2 169 66.3
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 4.4e-58 228.8 185 62.2
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 8.4e-57 224.6 183 59.6
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.9e-56 223.4 189 57.7
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 2.1e-55 219.9 180 59.4
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 5.1e-54 215.3 174 60.3
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 1.5e-53 213.8 189 56.1
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 4.3e-53 212.2 166 62.0
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.0e-51 205.7 185 55.7
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 5.8e-50 201.8 154 63.0
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 3.0e-46 189.5 187 55.1
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 3.3e-45 186.0 182 52.2
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.6e-44 183.7 195 49.2
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 6.2e-44 181.8 197 51.3
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-41 174.1 149 56.4
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 5.8e-34 148.7 88 81.8
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 2.5e-32 143.3 101 67.3
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 3.9e-30 136.0 113 56.6
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 8.7e-30 134.8 101 68.3
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.5e-26 124.0 77 77.9
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 3.6e-23 112.8 90 62.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.2e-20 101.7 92 53.3
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 1.2e-18 97.8 114 45.6
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 2.6e-18 96.7 75 61.3
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 2.6e-18 96.7 75 61.3
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.3e-17 94.4 145 42.8
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 2.5e-16 90.1 73 61.6
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 2.4e-11 73.6 181 30.4
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.1e-11 73.2 181 33.1
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 5.3e-11 72.4 153 30.1
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.9e-10 68.9 178 31.5
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 7.7e-10 68.6 184 29.9
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.3e-09 67.8 168 28.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.2e-09 67.0 141 29.1
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.9e-09 66.6 169 30.8
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 2.9e-09 66.6 187 27.8
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 8.5e-09 65.1 179 29.1
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 8.5e-09 65.1 179 27.9
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.1e-08 64.7 179 29.1
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.4e-08 64.3 200 29.0
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.4e-08 64.3 169 29.0
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 1.9e-08 63.9 179 27.9
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.9e-08 63.9 179 27.9
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.9e-08 63.9 183 29.5
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.9e-08 63.9 169 28.4
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 2.5e-08 63.5 172 27.9
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.5e-08 63.5 166 28.9
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 3.2e-08 63.2 176 27.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.2e-08 63.2 166 28.3
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 4.2e-08 62.8 163 28.2
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 4.2e-08 62.8 179 28.5
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 5.5e-08 62.4 173 27.2
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 7.2e-08 62.0 166 29.5
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 7.2e-08 62.0 179 27.9
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 7.2e-08 62.0 170 30.6
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 7.2e-08 62.0 179 26.8
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 9.4e-08 61.6 172 28.5
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.2e-07 61.2 179 27.9
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.2e-07 61.2 179 27.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.2e-07 61.2 179 27.4
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.2e-07 61.2 173 27.7
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.2e-07 61.2 184 29.3
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.6e-07 60.8 151 29.8
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.6e-07 60.8 176 27.3
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.1e-07 60.5 49 55.1
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 2.1e-07 60.5 177 27.1
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.7e-07 60.1 167 26.9
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 2.7e-07 60.1 169 29.6
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 2.7e-07 60.1 195 26.7
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.6e-07 59.7 181 27.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 3.6e-07 59.7 169 29.6
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 4.7e-07 59.3 172 27.9
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 4.7e-07 59.3 176 27.3
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 4.7e-07 59.3 169 29.0
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 6.1e-07 58.9 176 27.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 6.1e-07 58.9 179 30.2
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 8.0e-07 58.5 85 35.3
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.0e-06 58.2 176 27.8
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.0e-06 58.2 168 28.0
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.0e-06 58.2 177 28.2
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 1.4e-06 57.8 170 27.1
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.4e-06 57.8 181 27.1
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.8e-06 57.4 176 27.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 1.8e-06 57.4 172 27.3
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.3e-06 57.0 173 28.9
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 2.3e-06 57.0 178 27.0
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.0e-06 56.6 167 28.1
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 3.0e-06 56.6 164 29.3
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 3.9e-06 56.2 169 28.4
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 5.2e-06 55.8 164 28.0
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 5.2e-06 55.8 166 26.5
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 5.2e-06 55.8 175 28.0
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 6.7e-06 55.5 90 31.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 6.7e-06 55.5 176 26.7
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.8e-06 55.1 171 27.5


User provided reference genes

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