Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 7.9e-58 226.9 112 100.0
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 2.2e-28 129.0 72 88.9
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 3.8e-28 128.3 72 88.9
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 4.8e-23 111.3 69 76.8
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 3.1e-22 108.6 76 75.0
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 4.1e-22 108.2 72 75.0
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 4.1e-22 108.2 73 72.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.6e-21 106.3 73 71.2
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 7.7e-21 104.0 77 66.2
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 2.9e-20 102.1 62 82.3
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 3.8e-20 101.7 69 73.9
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.5e-19 99.8 69 72.5
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 2.5e-19 99.0 72 68.1
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 3.2e-19 98.6 72 66.7
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 4.2e-19 98.2 72 66.7
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 4.2e-19 98.2 70 72.9
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 5.5e-19 97.8 72 66.7
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 5.5e-19 97.8 72 66.7
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 5.5e-19 97.8 72 68.1
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 7.2e-19 97.4 69 71.0
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 7.2e-19 97.4 72 68.1
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 7.2e-19 97.4 72 66.7
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 7.2e-19 97.4 73 68.5
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 7.2e-19 97.4 72 66.7
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 7.2e-19 97.4 73 63.0
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 9.4e-19 97.1 72 65.3
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 1.2e-18 96.7 73 61.6
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.6e-18 96.3 75 70.7
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.6e-18 96.3 75 70.7
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 2.7e-18 95.5 72 65.3
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 2.7e-18 95.5 72 65.3
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 3.6e-18 95.1 63 77.8
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.0e-17 93.6 72 69.4
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.8e-17 92.8 51 84.3
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 2.3e-17 92.4 63 71.4
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 2.3e-17 92.4 68 72.1
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 2.3e-17 92.4 75 65.3
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 2.3e-17 92.4 72 61.1
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.0e-17 92.0 66 72.7
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 3.0e-17 92.0 50 86.0
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 4.0e-17 91.7 75 58.7
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 5.2e-17 91.3 71 66.2
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 6.7e-17 90.9 75 60.0
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 8.8e-17 90.5 80 61.2
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 8.8e-17 90.5 90 55.6
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 8.8e-17 90.5 72 62.5
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.5e-16 89.7 70 67.1
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.5e-16 89.7 72 59.7
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 1.5e-16 89.7 68 69.1
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 4.4e-16 88.2 72 58.3
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 4.4e-16 88.2 72 61.1
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 9.7e-16 87.0 75 57.3
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 9.7e-16 87.0 72 59.7
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 1.3e-15 86.7 73 64.4
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.7e-15 86.3 71 57.7
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.7e-15 86.3 72 59.7
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.2e-15 85.9 62 69.4
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.7e-15 85.1 62 69.4
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 4.8e-15 84.7 77 54.5
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 4.8e-15 84.7 72 58.3
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 4.8e-15 84.7 62 69.4
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 4.8e-15 84.7 73 60.3
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 8.2e-15 84.0 57 70.2
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 3.1e-14 82.0 71 59.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 5.3e-14 81.3 72 55.6
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 9.1e-14 80.5 73 53.4
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.0e-13 79.3 73 53.4
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.0e-13 79.3 73 53.4
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 2.7e-13 79.0 62 56.5
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 7.7e-13 77.4 72 54.2
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 7.7e-13 77.4 70 55.7
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 1.3e-12 76.6 46 71.7
Sed0025248 Sechium edule HOM05D066588 ORTHO05D010018 1.7e-12 76.3 44 84.1
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 2.9e-12 75.5 49 77.6
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 3.8e-12 75.1 71 54.9
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 1.1e-11 73.6 40 80.0
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 1.9e-11 72.8 64 57.8
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 3.2e-11 72.0 76 53.9
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 2.7e-10 68.9 60 60.0
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 1.0e-09 67.0 64 53.1
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 1.8e-09 66.2 68 50.0
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.2e-08 63.5 52 55.8
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 5.4e-06 54.7 35 77.1
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 7.0e-06 54.3 48 60.4
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 7.0e-06 54.3 47 63.8
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 9.1e-06 53.9 48 62.5
Sed0006208 Sechium edule HOM05D007947 ORTHO05D010018 9.1e-06 53.9 67 55.2


User provided reference genes

Program Settings