Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G013250 Citrullus lanatus HOM05D007242 ORTHO05D009089 2.2e-260 902.1 589 100.0
CsaV3_2G017430 Cucumis sativus L. HOM05D007242 ORTHO05D009089 6.1e-218 761.1 589 87.6
MELO3C020940.2 Cucumis melo HOM05D007242 ORTHO05D009089 1.0e-212 743.8 583 86.6
Sed0022143 Sechium edule HOM05D007242 ORTHO05D009089 5.8e-192 674.9 589 80.8
Atru.chr3.510 Acer truncatum HOM05D007242 ORTHO05D009089 1.8e-116 424.1 565 50.1
CSS0024550 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 7.4e-115 418.7 570 62.1
Haze_18840 Corylus avellana HOM05D007242 ORTHO05D009089 1.7e-114 417.5 581 61.3
GSVIVG01019029001 Vitis vinifera HOM05D007242 ORTHO05D009089 2.8e-114 416.8 577 54.6
Potri.005G127500 Populus trichocarpa HOM05D007242 ORTHO05D009089 4.8e-114 416.0 571 62.2
Prupe.7G148400 Prunus persica HOM05D007242 ORTHO05D009089 4.1e-113 412.9 566 62.4
CiPaw.15G142800 Carya illinoinensis HOM05D007242 ORTHO05D009089 3.8e-111 406.4 563 61.5
Lj2A917T62 Lonicera japonica HOM05D007242 ORTHO05D009089 4.2e-110 402.9 580 50.5
Manes.13G136000 Manihot esculenta HOM05D007242 ORTHO05D009089 1.2e-109 401.4 560 61.1
Hma1.2p1_0939F.1_g239400 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.7e-109 400.2 582 59.3
CANSAT35G0651 Cannabis sativa HOM05D007242 ORTHO05D009089 3.6e-109 399.8 575 60.5
Rhsim08G0035000 Rhododendron simsii HOM05D007242 ORTHO05D009089 6.1e-109 399.1 582 60.0
Sabra05G0104300 Salix brachista HOM05D007242 ORTHO05D009089 1.4e-108 397.9 586 47.1
Ciclev10027297m.g Citrus clementina HOM05D007242 ORTHO05D009089 3.0e-108 396.7 517 58.2
Duzib264G0124 Durio zibethinus HOM05D007242 ORTHO05D009089 1.1e-107 394.8 558 60.4
MD15G1269300 Malus domestica HOM05D007242 ORTHO05D009089 2.6e-107 393.7 582 58.1
Gorai.007G051500 Gossypium raimondii HOM05D007242 ORTHO05D009089 1.3e-106 391.3 553 60.4
Gohir.A11G044400 Gossypium hirsutum HOM05D007242 ORTHO05D009089 2.4e-105 387.1 555 60.4
Hma1.2p1_0268F.1_g107710 Hydrangea macrophylla HOM05D007242 ORTHO05D009089 2.4e-105 387.1 587 58.9
Thecc.01G042000 Theobroma cacao HOM05D007242 ORTHO05D009089 3.5e-104 383.3 557 60.1
Lj2C896T5 Lonicera japonica HOM05D007242 ORTHO05D009089 2.2e-103 380.6 548 51.6
arahy.Tifrunner.gnm1.ann1.YZC3AP Arachis hypogaea HOM05D007242 ORTHO05D009089 6.5e-103 379.0 555 53.3
TPR.G15492 Trifolium pratense HOM05D007242 ORTHO05D009089 1.9e-102 377.5 562 59.1
arahy.Tifrunner.gnm1.ann1.79NCEV Arachis hypogaea HOM05D007242 ORTHO05D009089 4.2e-102 376.3 552 53.6
Lalb_Chr05g0221691 Lupinus albus HOM05D007242 ORTHO05D009089 4.2e-102 376.3 583 57.6
Glyma.05G246000 Glycine max HOM05D007242 ORTHO05D009089 1.6e-101 374.4 556 57.2
Psat4g001600 Pisum sativum HOM05D007242 ORTHO05D009089 3.6e-101 373.2 558 57.7
TWI53G0783 Tripterygium wilfordii HOM05D007242 ORTHO05D009089 8.0e-101 372.1 579 59.2
TAR381G0682 Trochodendron aralioides HOM05D007242 ORTHO05D009089 8.0e-101 372.1 560 60.0
VMungo0251G2211 Vigna mungo HOM05D007242 ORTHO05D009089 2.3e-100 370.5 566 57.2
Phvul.002G329700 Phaseolus vulgaris HOM05D007242 ORTHO05D009089 3.0e-100 370.2 528 60.8
QL12p024714 Quercus lobata HOM05D007242 ORTHO05D009089 7.5e-99 365.5 514 62.5
Medtr8g107230 Medicago truncatula HOM05D007242 ORTHO05D009089 5.3e-97 359.4 518 52.7
DCAR_026265 Daucus carota HOM05D007242 ORTHO05D009089 1.0e-95 355.1 556 56.8
BraA06t27320Z Brassica rapa HOM05D007242 ORTHO05D009089 1.3e-95 354.8 566 56.0
A06p44470 Brassica napus HOM05D007242 ORTHO05D009089 2.2e-95 354.0 568 55.8
THA.LOC104819810 Tarenaya hassleriana HOM05D007242 ORTHO05D009089 2.9e-95 353.6 556 59.7
CAN.G1204.3 Capsicum annuum HOM05D007242 ORTHO05D009089 1.1e-94 351.7 563 48.0
Peaxi162Scf00075g00618 Petunia axillaris HOM05D007242 ORTHO05D009089 1.1e-94 351.7 557 57.6
Aqoxy6G01016 Aquilegia oxysepala HOM05D007242 ORTHO05D009089 1.5e-94 351.3 564 57.4
Sp2g12820 Schrenkiella parvula HOM05D007242 ORTHO05D009089 2.5e-94 350.5 556 56.7
Oeu038867.1 Olea europaea HOM05D007242 ORTHO05D009089 1.2e-93 348.2 513 59.8
Eucgr.B03084 Eucalyptus grandis HOM05D007242 ORTHO05D009089 6.1e-93 345.9 515 60.4
BcaC06g31314 Brassica carinata HOM05D007242 ORTHO05D009089 2.3e-92 344.0 556 56.3
PGR102G1679 Punica granatum HOM05D007242 ORTHO05D009089 2.3e-92 344.0 569 56.2
Solyc01g008480.4 Solanum lycopersicum HOM05D007242 ORTHO05D009089 2.3e-92 344.0 552 57.1
Sopen01g004000 Solanum pennellii HOM05D007242 ORTHO05D009089 3.0e-92 343.6 552 56.9
AT2G01390 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 4.0e-92 343.2 559 57.6
BolC7t43717H Brassica oleracea HOM05D007242 ORTHO05D009089 6.8e-92 342.4 556 55.6
Aa31LG2G8550 Aethionema arabicum HOM05D007242 ORTHO05D009089 8.8e-92 342.0 556 56.3
Thhalv10000833m.g Eutrema salsugineum HOM05D007242 ORTHO05D009089 1.5e-91 341.3 558 56.8
SGA_v2.0_scaffold204G41644 Striga asiatica HOM05D007242 ORTHO05D009089 3.4e-91 340.1 529 59.0
AL5G10350 Arabidopsis lyrata HOM05D007242 ORTHO05D009089 5.7e-91 339.3 561 56.0
BcaC06g34194 Brassica carinata HOM05D007242 ORTHO05D009089 5.7e-91 339.3 556 55.0
C07p31760 Brassica napus HOM05D007242 ORTHO05D009089 5.7e-91 339.3 556 55.4
vmacro23494 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 7.5e-91 339.0 534 59.9
Nitab4.5_0010783g0030 Nicotiana tabacum HOM05D007242 ORTHO05D009089 9.8e-91 338.6 565 55.6
HanXRQChr14g0431951 Helianthus annuus HOM05D007242 ORTHO05D009089 7.0e-89 332.4 562 55.2
Carub.0005s0035 Capsella rubella HOM05D007242 ORTHO05D009089 1.6e-88 331.3 531 57.1
Hund14133 Selenicereus undatus HOM05D007242 ORTHO05D009089 2.8e-85 320.5 525 57.9
Cc07_g05120 Coffea canephora HOM05D007242 ORTHO05D009089 9.8e-83 312.0 559 54.9
MSTRG.2935 Avicennia marina HOM05D007242 ORTHO05D009089 1.8e-81 307.8 525 57.1
Migut.H00525 Erythranthe guttata HOM05D007242 ORTHO05D009089 2.4e-81 307.4 566 53.4
Nn1g05103 Nelumbo nucifera HOM05D007242 ORTHO05D009089 9.2e-81 305.4 558 53.9
EL10Ac6g14891 Beta vulgaris HOM05D007242 ORTHO05D009089 1.2e-80 305.1 556 54.1
Peaxi162Scf00075g00617 Petunia axillaris HOM05D007242 ORTHO05D009089 1.7e-79 301.2 550 55.1
MBI16_g13145_MAGBIO Magnolia biondii HOM05D007242 ORTHO05D009089 2.3e-79 300.8 513 55.9
Lsat_1_v5_gn_2_38041 Lactuca sativa HOM05D007242 ORTHO05D009089 4.3e-78 296.6 561 53.7
Dinv26797 Davidia involucrata HOM05D007242 ORTHO05D009089 7.3e-78 295.8 470 61.7
SalBow1G2223 Salvia bowleyana HOM05D007242 ORTHO05D009089 3.6e-77 293.5 481 59.5
AUR62008019 Chenopodium quinoa HOM05D007242 ORTHO05D009089 5.0e-71 273.1 551 52.8
ATR0767G228 Amborella trichopoda HOM05D007242 ORTHO05D009089 1.2e-69 268.5 524 53.2
HanXRQChr07g0193491 Helianthus annuus HOM05D007242 ORTHO05D009089 2.2e-66 257.7 478 49.4
Gohir.D11G047900 Gossypium hirsutum HOM05D007242 ORTHO05D009089 2.8e-61 240.7 392 64.8
COL.COLO4_04840 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.4e-60 238.4 303 43.6
CARHR143900 Cardamine hirsuta HOM05D007242 ORTHO05D009089 2.0e-59 234.6 306 42.2
Nitab4.5_0008184g0020 Nicotiana tabacum HOM05D007242 ORTHO05D009089 6.4e-58 229.6 282 42.2
A06p37220 Brassica napus HOM05D007242 ORTHO05D009089 3.3e-54 217.2 281 42.3
Glyma.08G053933 Glycine max HOM05D007242 ORTHO05D009089 2.4e-52 211.1 239 47.7
MD02G1154900 Malus domestica HOM05D007242 ORTHO05D009089 1.7e-50 204.9 420 34.3
BraA06t26646Z Brassica rapa HOM05D007242 ORTHO05D009089 2.9e-50 204.1 269 41.3
Zm00001eb288630 Zea mays HOM05D007242 ORTHO05D009089 8.7e-47 192.6 532 39.8
ECA246G4655 Erigeron canadensis HOM05D007242 ORTHO05D009089 7.3e-46 189.5 278 38.5
Os10g0358700 Oryza sativa ssp. japonica HOM05D007242 ORTHO05D009089 2.4e-44 184.5 523 39.8
vmacro22084 Vaccinium macrocarpon HOM05D007242 ORTHO05D009089 1.1e-41 175.6 422 36.0
CDE07G1297 Ceratophyllum demersum HOM05D007242 ORTHO05D009089 3.3e-38 164.1 131 61.1
COL.COLO4_22144 Corchorus olitorius HOM05D007242 ORTHO05D009089 1.4e-36 158.7 106 62.3
CARHR143890 Cardamine hirsuta HOM05D007242 ORTHO05D009089 3.8e-34 150.6 144 52.8
AUR62003202 Chenopodium quinoa HOM05D007242 ORTHO05D009089 3.8e-34 150.6 238 37.8
HPP92_006079 Vanilla planifolia HOM05D007242 ORTHO05D009089 6.2e-29 133.3 193 36.8
Glyma.08G053867 Glycine max HOM05D007242 ORTHO05D009089 1.4e-28 132.1 111 55.9
AT2G01360 Arabidopsis thaliana HOM05D007242 ORTHO05D009089 4.6e-24 117.1 168 36.9
HanXRQChr14g0431911 Helianthus annuus HOM05D007242 ORTHO05D009089 1.1e-20 105.9 163 38.7
BcaC06g34182 Brassica carinata HOM05D007242 ORTHO05D009089 3.5e-16 90.9 108 45.4
BcaB08g34298 Brassica carinata HOM05D007242 ORTHO05D009089 1.3e-13 82.4 87 48.3
Lj4C132T2 Lonicera japonica HOM05D007242 ORTHO05D009089 6.3e-13 80.1 94 42.6
BcaC06g34191 Brassica carinata HOM05D007242 ORTHO05D009089 5.3e-12 77.0 117 40.2
Atru.chr3.508 Acer truncatum HOM05D007242 ORTHO05D009089 4.5e-11 73.9 67 55.2
PSO832G1391 Papaver somniferum HOM05D004079 ORTHO05D005437 4.5e-11 73.9 97 41.2
EL10Ac4g08697 Beta vulgaris HOM05D007242 ORTHO05D009089 5.9e-11 73.6 127 33.9
Mapoly0026s0069 Marchantia polymorpha HOM05D004079 ORTHO05D005437 2.9e-10 71.2 94 31.9
Potri.015G066400 Populus trichocarpa HOM05D004079 ORTHO05D005437 3.8e-10 70.9 97 41.2
Sabra15G0091500 Salix brachista HOM05D004079 ORTHO05D005437 3.8e-10 70.9 99 41.4
CSS0006147 Camellia sinensis var. sinensis HOM05D007242 ORTHO05D009089 8.5e-10 69.7 131 35.9
Zm00001eb348820 Zea mays HOM05D007242 ORTHO05D009089 8.5e-10 69.7 95 38.9
BraA08t34945Z Brassica rapa HOM05D004079 ORTHO05D005437 3.2e-09 67.8 103 37.9
Rhsim12G0159600 Rhododendron simsii HOM05D004079 ORTHO05D005437 5.5e-09 67.0 95 35.8
A08p30100 Brassica napus HOM05D004079 ORTHO05D005437 9.4e-09 66.2 103 36.9
SEGI_13247 Sequoiadendron giganteum HOM05D000238 ORTHO05D005437 9.4e-09 66.2 93 37.6
DCAR_005313 Daucus carota HOM05D004079 ORTHO05D005437 1.6e-08 65.5 102 37.3
BcaB03g12947 Brassica carinata HOM05D004079 ORTHO05D005437 2.1e-08 65.1 103 35.0
BcaC07g38966 Brassica carinata HOM05D004079 ORTHO05D005437 2.1e-08 65.1 103 35.0
C08p19050 Brassica napus HOM05D004079 ORTHO05D005437 2.1e-08 65.1 103 35.0
BolC8t49530H Brassica oleracea HOM05D004079 ORTHO05D005437 2.1e-08 65.1 103 35.0
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 2.1e-08 65.1 97 37.1
Glyma.05G030900 Glycine max HOM05D004079 ORTHO05D005437 2.1e-08 65.1 96 37.5
BcaC05g25795 Brassica carinata HOM05D004079 ORTHO05D005437 2.7e-08 64.7 150 28.7
C05p17340 Brassica napus HOM05D004079 ORTHO05D005437 2.7e-08 64.7 150 28.7
BolC5t30434H Brassica oleracea HOM05D004079 ORTHO05D005437 2.7e-08 64.7 150 28.7
A06p15120 Brassica napus HOM05D004079 ORTHO05D005437 6.1e-08 63.5 95 35.8
BraA06t24627Z Brassica rapa HOM05D004079 ORTHO05D005437 6.1e-08 63.5 95 35.8
A07p40430 Brassica napus HOM05D004079 ORTHO05D005437 7.9e-08 63.2 96 34.4
BraA07t31585Z Brassica rapa HOM05D004079 ORTHO05D005437 7.9e-08 63.2 96 34.4
BcaC08g46901 Brassica carinata HOM05D004079 ORTHO05D005437 1.0e-07 62.8 98 33.7
BcaC08g46918 Brassica carinata HOM05D004079 ORTHO05D005437 1.0e-07 62.8 98 33.7
Lj1g0021535 Lotus japonicus HOM05D004079 ORTHO05D005437 1.0e-07 62.8 97 37.1
SGA_v2.0_scaffold56G20067 Striga asiatica HOM05D004079 ORTHO05D005437 1.0e-07 62.8 89 39.3
AagrBONN_evm.TU.Sc2ySwM_228.2469 Anthoceros agrestis HOM05D004079 ORTHO05D005437 1.4e-07 62.4 95 33.7
C06p48780 Brassica napus HOM05D004079 ORTHO05D005437 3.0e-07 61.2 96 33.3
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 3.9e-07 60.8 91 35.2
ATR0661G551 Amborella trichopoda HOM05D004079 ORTHO05D005437 5.1e-07 60.5 96 37.5
BolC6t39914H Brassica oleracea HOM05D004079 ORTHO05D005437 5.1e-07 60.5 98 32.7
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 5.1e-07 60.5 95 32.6
TPR.G11874 Trifolium pratense HOM05D004079 ORTHO05D005437 5.1e-07 60.5 96 37.5
Mapoly0050s0075 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.7e-07 60.1 97 30.9
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 6.7e-07 60.1 93 33.3
HPP92_006080 Vanilla planifolia HOM05D007242 ORTHO05D009089 6.7e-07 60.1 67 41.8
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 8.8e-07 59.7 96 33.3
AagrBONN_evm.TU.Sc2ySwM_344.143 Anthoceros agrestis HOM05D004079 ORTHO05D008936 2.0e-06 58.5 94 29.8
CiPaw.02G151100 Carya illinoinensis HOM05D006749 ORTHO05D008352 2.0e-06 58.5 103 32.0
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 2.5e-06 58.2 92 34.8
AagrBONN_evm.TU.Sc2ySwM_344.782 Anthoceros agrestis HOM05D004079 ORTHO05D005437 2.5e-06 58.2 117 30.8
QL05p024247 Quercus lobata HOM05D006749 ORTHO05D008352 2.5e-06 58.2 98 34.7
AagrBONN_evm.TU.Sc2ySwM_117.2351 Anthoceros agrestis HOM05D007830 ORTHO05D003673 3.3e-06 57.8 97 33.0
Cc04_g03450 Coffea canephora HOM05D006749 ORTHO05D008352 4.3e-06 57.4 83 34.9
CsaV3_3G025150 Cucumis sativus L. HOM05D006749 ORTHO05D008352 5.7e-06 57.0 98 32.7
Nn4g23007 Nelumbo nucifera HOM05D004079 ORTHO05D005437 5.7e-06 57.0 87 35.6
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 7.4e-06 56.6 103 32.0
Thecc.06G087000 Theobroma cacao HOM05D006749 ORTHO05D008352 7.4e-06 56.6 83 34.9
Cfa002064 Carpinus fangiana HOM05D006749 ORTHO05D008352 9.7e-06 56.2 103 32.0


User provided reference genes

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