Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.2e-173 611.3 314 100.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.6e-156 556.2 312 89.4
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.6e-154 547.0 312 87.8
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.4e-144 516.5 316 84.8
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.3e-99 366.3 276 64.1
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.8e-96 356.7 309 57.9
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-95 354.0 269 62.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.7e-94 350.1 269 62.5
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 5.0e-94 348.6 270 61.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 9.5e-93 344.4 267 60.7
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 1.6e-92 343.6 268 60.1
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 6.8e-91 338.2 265 60.0
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 2.6e-90 336.3 280 57.9
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 4.4e-90 335.5 296 55.1
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 4.4e-90 335.5 306 54.2
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 9.8e-90 334.3 286 56.3
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.3e-89 334.0 304 56.2
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 1.7e-89 333.6 272 59.9
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 2.9e-89 332.8 318 53.1
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.9e-89 332.8 303 56.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 8.3e-89 331.3 280 56.8
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.2e-88 329.3 301 55.5
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 5.4e-88 328.6 307 55.7
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 5.4e-88 328.6 323 54.5
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 7.0e-88 328.2 269 57.6
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 7.0e-88 328.2 308 53.9
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.6e-87 327.0 304 55.3
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 7.8e-87 324.7 272 55.1
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.3e-86 323.9 272 55.1
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.7e-86 323.6 305 54.1
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.7e-86 323.6 305 54.1
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.0e-86 322.8 291 53.6
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 5.0e-86 322.0 266 55.6
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 8.6e-86 321.2 291 53.6
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 1.1e-85 320.9 306 52.0
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.9e-85 320.1 266 57.5
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.9e-85 320.1 276 56.2
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.5e-85 319.7 291 53.6
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.5e-85 319.7 298 56.4
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 4.3e-85 318.9 280 55.4
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.3e-85 318.9 296 52.0
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 5.6e-85 318.5 275 57.5
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 9.5e-85 317.8 310 52.3
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 1.2e-84 317.4 305 53.4
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.6e-84 317.0 315 51.4
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 1.6e-84 317.0 280 54.3
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.1e-84 316.6 280 54.3
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.8e-84 316.2 266 55.3
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.6e-84 315.8 273 55.7
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 4.7e-84 315.5 266 54.1
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 4.7e-84 315.5 270 54.8
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 6.2e-84 315.1 300 52.3
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.4e-83 313.9 315 50.8
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.8e-83 313.5 267 55.8
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 4.0e-83 312.4 300 52.3
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 5.2e-83 312.0 270 55.2
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.2e-82 310.8 269 56.9
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.5e-82 310.5 266 54.1
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.5e-82 310.5 276 54.0
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 3.4e-82 309.3 276 51.8
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 9.8e-82 307.8 319 51.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 9.8e-82 307.8 277 55.2
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.2e-81 306.6 319 51.1
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.2e-81 306.6 278 52.5
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 4.1e-80 302.4 309 49.8
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 5.4e-80 302.0 300 51.3
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 7.1e-80 301.6 309 53.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 9.2e-80 301.2 312 50.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 1.2e-79 300.8 291 52.6
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 2.7e-79 299.7 276 49.6
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 3.5e-79 299.3 301 49.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 4.6e-79 298.9 266 51.5
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.9e-78 295.8 279 50.2
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 5.1e-78 295.4 280 52.1
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.5e-77 293.1 299 48.8
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.2e-76 290.8 263 52.5
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.2e-76 290.8 268 51.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.1e-76 290.0 299 48.5
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 2.1e-76 290.0 269 52.4
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.8e-76 289.7 263 52.1
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.7e-76 288.9 305 49.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 6.2e-76 288.5 314 46.8
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 8.1e-76 288.1 269 50.2
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.8e-75 287.0 319 46.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 1.8e-75 287.0 286 50.3
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.3e-75 286.6 313 46.6
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.5e-74 283.9 313 46.0
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 1.5e-74 283.9 264 52.7
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.0e-74 283.5 270 53.0
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.0e-74 283.5 268 52.2
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.6e-74 283.1 313 46.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.4e-74 282.7 269 48.3
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 7.6e-74 281.6 320 44.4
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.3e-73 280.8 307 45.9
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.2e-73 280.0 311 45.0
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.2e-73 280.0 291 46.7
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 2.9e-73 279.6 311 45.0
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 6.4e-73 278.5 315 44.1
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 5.4e-72 275.4 276 50.7
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.6e-71 273.9 296 49.0
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 1.6e-71 273.9 285 45.3
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.5e-71 272.7 303 45.2
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 1.0e-70 271.2 263 51.0
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.9e-70 269.2 271 49.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 6.6e-70 268.5 353 41.9
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.5e-69 267.3 268 48.5
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 3.3e-69 266.2 265 48.3
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 2.8e-68 263.1 310 42.9
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 2.8e-68 263.1 293 46.8
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 8.1e-68 261.5 274 45.3
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 8.1e-68 261.5 319 42.0
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.4e-67 260.8 310 44.5
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 8.9e-67 258.1 198 64.1
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.6e-66 256.5 211 58.3
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.3e-65 254.2 270 49.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.9e-65 253.1 202 61.4
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.9e-65 253.1 202 61.4
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.6e-63 247.3 252 48.0
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 3.5e-63 246.1 201 55.7
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 7.3e-61 238.4 296 41.9
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.6e-60 237.3 257 46.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.6e-58 229.9 235 47.2
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.4e-56 224.2 308 41.9
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 1.6e-55 220.7 262 42.0
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 8.7e-54 214.9 300 40.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.4e-51 206.8 299 40.1
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 9.9e-50 201.4 260 41.5
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.3e-49 201.1 260 40.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 2.2e-49 200.3 181 54.1
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 8.4e-49 198.4 171 55.6
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 5.5e-48 195.7 302 37.4
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.1e-47 193.7 269 37.5
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 7.9e-47 191.8 264 40.5
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.3e-44 184.5 178 49.4
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.1e-44 183.7 270 36.3
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.8e-44 183.3 261 37.9
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 3.9e-30 136.3 98 63.3
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.7e-30 135.6 206 37.9
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.8e-20 103.6 201 31.8
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 6.3e-20 102.4 124 40.3
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 1.5e-18 97.8 92 48.9
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.0e-17 95.1 98 44.9
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.4e-16 91.3 140 38.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 6.3e-12 75.9 226 28.3
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 8.2e-12 75.5 241 24.1
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.8e-11 74.3 101 38.6
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.8e-11 74.3 101 38.6
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 7.0e-11 72.4 64 46.9
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.5e-08 64.7 199 26.6


User provided reference genes

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