Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 7.5e-119 430.6 233 100.0
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.2e-113 413.3 233 95.3
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 4.0e-112 408.3 242 92.1
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 7.5e-103 377.5 234 85.9
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 6.0e-92 341.3 219 84.9
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 8.6e-91 337.4 219 83.1
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 1.7e-86 323.2 223 79.4
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 3.7e-86 322.0 228 78.5
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 6.4e-86 321.2 214 81.3
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 7.1e-85 317.8 229 75.5
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 9.2e-85 317.4 224 78.6
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 2.1e-84 316.2 225 78.2
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 4.6e-84 315.1 227 78.4
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.0e-83 313.9 227 78.9
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 1.0e-83 313.9 224 77.7
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 1.0e-83 313.9 227 78.4
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.3e-83 313.5 227 78.9
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 1.3e-83 313.5 227 78.4
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 1.7e-83 313.2 225 70.2
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 2.3e-83 312.8 210 81.9
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 3.0e-83 312.4 227 78.0
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 5.1e-83 311.6 225 79.1
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 8.6e-83 310.8 214 79.4
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 8.6e-83 310.8 224 77.2
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 1.5e-82 310.1 224 78.6
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.9e-82 309.7 227 77.5
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 7.3e-82 307.8 211 71.1
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 9.5e-82 307.4 214 73.8
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 9.5e-82 307.4 214 73.8
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 2.1e-81 306.2 212 79.7
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.8e-81 305.8 225 76.9
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 3.6e-81 305.4 214 77.6
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 8.1e-81 304.3 213 77.5
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 1.1e-80 303.9 215 80.0
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 1.8e-80 303.1 215 79.1
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 1.8e-80 303.1 214 71.5
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 3.1e-80 302.4 209 69.9
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 3.1e-80 302.4 225 71.6
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 6.8e-80 301.2 215 75.8
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 6.8e-80 301.2 212 79.7
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 8.9e-80 300.8 215 68.8
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.5e-79 300.1 223 66.4
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 1.5e-79 300.1 213 77.5
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 2.0e-79 299.7 210 69.5
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 1.3e-78 297.0 223 69.1
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 8.4e-78 294.3 208 78.8
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 8.4e-78 294.3 212 67.9
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 1.1e-77 293.9 229 69.9
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.4e-77 293.5 224 72.8
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 1.9e-77 293.1 227 70.9
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 3.2e-77 292.4 212 67.5
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 1.2e-76 290.4 212 74.5
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 2.1e-76 289.7 216 72.7
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 2.1e-76 289.7 233 62.2
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 4.6e-76 288.5 209 75.1
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 4.6e-76 288.5 266 56.8
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 4.6e-76 288.5 210 69.0
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 6.0e-76 288.1 213 73.2
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 6.0e-76 288.1 210 75.7
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 1.0e-75 287.3 207 74.4
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 1.3e-75 287.0 209 74.2
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 2.3e-75 286.2 209 73.7
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 2.3e-75 286.2 209 73.7
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 3.0e-75 285.8 232 62.1
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 5.1e-75 285.0 210 68.6
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 8.6e-75 284.3 212 73.6
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.1e-74 283.9 225 62.2
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 1.1e-74 283.9 215 72.6
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 1.1e-74 283.9 207 72.9
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 1.9e-74 283.1 171 78.4
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 3.3e-74 282.3 210 74.8
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 3.3e-74 282.3 220 61.4
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 3.3e-74 282.3 216 64.8
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 4.3e-74 282.0 212 74.5
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 5.6e-74 281.6 221 70.1
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 7.3e-74 281.2 212 72.2
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 9.6e-74 280.8 210 74.3
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 1.6e-73 280.0 215 71.2
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 1.6e-73 280.0 216 71.3
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 2.1e-73 279.6 211 74.4
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 3.6e-73 278.9 215 70.7
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 4.7e-73 278.5 215 70.7
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 4.7e-73 278.5 205 75.1
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 6.2e-73 278.1 212 72.6
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 8.1e-73 277.7 215 70.2
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 8.1e-73 277.7 168 77.4
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 1.8e-72 276.6 211 73.9
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 2.4e-72 276.2 212 70.8
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 2.4e-72 276.2 212 70.8
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 2.4e-72 276.2 214 72.9
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 2.4e-72 276.2 210 72.9
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 3.1e-72 275.8 215 70.2
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 3.1e-72 275.8 215 69.8
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 4.0e-72 275.4 207 74.4
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 4.0e-72 275.4 228 60.1
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 1.5e-71 273.5 215 69.8
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 1.5e-71 273.5 212 70.8
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 2.6e-71 272.7 212 69.8
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 2.2e-70 269.6 223 68.2
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 1.1e-69 267.3 209 61.2
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 4.2e-69 265.4 210 71.9
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 3.5e-68 262.3 207 60.9
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 4.6e-68 261.9 189 76.7
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 4.6e-68 261.9 225 64.9
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 2.4e-64 249.6 210 57.1
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 6.4e-62 241.5 215 58.6
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 1.4e-61 240.4 204 63.2
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.2e-60 237.3 203 61.6
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 2.7e-60 236.1 209 55.0
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 9.3e-53 211.1 227 58.6
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 2.1e-49 199.9 203 56.2
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 1.5e-47 193.7 170 56.5
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 3.8e-46 189.1 230 55.7
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 1.1e-45 187.6 211 43.1
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 6.3e-41 171.8 167 49.7
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 6.3e-41 171.8 139 59.0
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 2.1e-36 156.8 213 47.9
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 1.3e-33 147.5 96 74.0
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 5.9e-31 138.7 90 74.4
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 1.4e-19 100.9 93 71.0
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 4.0e-11 72.8 47 68.1
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 1.7e-09 67.4 80 36.2
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 8.2e-09 65.1 68 47.1
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 2.0e-07 60.5 54 55.6
FAN24G2983 Fragaria x ananassa HOM05D002813 ORTHO05D003203 4.5e-07 59.3 161 27.3
FvH4_2g32630 Fragaria vesca HOM05D002813 ORTHO05D003203 7.7e-07 58.5 135 30.4
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 7.7e-07 58.5 105 36.2
FvH4_2g32590 Fragaria vesca HOM05D002813 ORTHO05D003203 1.0e-06 58.2 150 31.3
FAN24G0821 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.0e-06 58.2 150 31.3
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 1.7e-06 57.4 104 35.6
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 3.8e-06 56.2 105 31.4
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 6.5e-06 55.5 151 29.8


User provided reference genes

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