Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G012200 Citrullus lanatus HOM05D008250 ORTHO05D010361 1.4e-23 112.1 56 100.0
Potri.007G006700 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.6e-19 98.6 54 88.9
Sed0009961 Sechium edule HOM05D008250 ORTHO05D010361 1.4e-18 95.5 56 82.1
GSVIVG01002948001 Vitis vinifera HOM05D008250 ORTHO05D010361 1.8e-18 95.1 53 84.9
GSVIVG01004436001 Vitis vinifera HOM05D008250 ORTHO05D010361 1.8e-18 95.1 53 84.9
COL.COLO4_11607 Corchorus olitorius HOM05D008250 ORTHO05D010361 4.0e-18 94.0 54 83.3
Actinidia16414 Actinidia chinensis HOM05D008250 ORTHO05D010361 8.9e-18 92.8 55 80.0
HanXRQChr09g0255361 Helianthus annuus HOM05D008250 ORTHO05D010361 1.5e-17 92.0 56 80.4
Manes.12G117000 Manihot esculenta HOM05D008250 ORTHO05D010361 1.5e-17 92.0 54 79.6
CiPaw.01G002500 Carya illinoinensis HOM05D008250 ORTHO05D010361 2.0e-17 91.7 55 87.3
Hma1.2p1_1760F.1_g301220 Hydrangea macrophylla HOM05D008250 ORTHO05D010361 2.0e-17 91.7 54 81.5
Atru.chr3.1053 Acer truncatum HOM05D008250 ORTHO05D010361 2.6e-17 91.3 54 77.8
Thecc.01G075500 Theobroma cacao HOM05D008250 ORTHO05D010361 2.6e-17 91.3 48 91.7
Ciclev10026916m.g Citrus clementina HOM05D008250 ORTHO05D010361 7.5e-17 89.7 54 81.5
Gohir.A12G078200 Gossypium hirsutum HOM05D008250 ORTHO05D010361 7.5e-17 89.7 54 79.6
Gohir.D12G076400 Gossypium hirsutum HOM05D008250 ORTHO05D010361 9.8e-17 89.4 54 77.8
Gorai.008G085000 Gossypium raimondii HOM05D008250 ORTHO05D010361 9.8e-17 89.4 54 77.8
TWI74G1530 Tripterygium wilfordii HOM05D008250 ORTHO05D010361 9.8e-17 89.4 54 77.8
Lsat_1_v5_gn_4_159680 Lactuca sativa HOM05D008250 ORTHO05D010361 1.7e-16 88.6 54 75.9
Prupe.6G217600 Prunus persica HOM05D008250 ORTHO05D010361 2.2e-16 88.2 54 79.6
RcHm_v2.0_Chr2g0108561 Rosa chinensis HOM05D008250 ORTHO05D010361 6.4e-16 86.7 53 77.4
Thhalv10005252m.g Eutrema salsugineum HOM05D008250 ORTHO05D010361 1.1e-15 85.9 56 75.0
Phvul.003G233500 Phaseolus vulgaris HOM05D008250 ORTHO05D010361 1.1e-15 85.9 55 76.4
Nn6g34516 Nelumbo nucifera HOM05D008250 ORTHO05D010361 1.4e-15 85.5 53 77.4
MD02G1189100 Malus domestica HOM05D008250 ORTHO05D010361 1.9e-15 85.1 51 78.4
BcaB02g09904 Brassica carinata HOM05D008250 ORTHO05D010361 3.2e-15 84.3 56 73.2
BcaC01g02825 Brassica carinata HOM05D008250 ORTHO05D010361 4.1e-15 84.0 56 73.2
BraA06t26203Z Brassica rapa HOM05D008250 ORTHO05D010361 4.1e-15 84.0 56 73.2
Lalb_Chr05g0230301 Lupinus albus HOM05D008250 ORTHO05D010361 4.1e-15 84.0 57 77.2
Aqoxy6G02462 Aquilegia oxysepala HOM05D008250 ORTHO05D010361 7.0e-15 83.2 50 80.0
Sc03g0002500 Simmondsia chinensis HOM05D008250 ORTHO05D010361 7.0e-15 83.2 54 70.4
Migut.H00327 Erythranthe guttata HOM05D008250 ORTHO05D010361 9.2e-15 82.8 46 82.6
C03p59760 Brassica napus HOM05D008250 ORTHO05D010361 2.7e-14 81.3 56 71.4
C03p59770 Brassica napus HOM05D008250 ORTHO05D010361 2.7e-14 81.3 56 71.4
BolC3t18239H Brassica oleracea HOM05D008250 ORTHO05D010361 2.7e-14 81.3 56 71.4
BolC3t18240H Brassica oleracea HOM05D008250 ORTHO05D010361 2.7e-14 81.3 56 71.4
Solyc02g092130.2 Solanum lycopersicum HOM05D008250 ORTHO05D010361 6.0e-14 80.1 51 76.5
Glyma.05G107700 Glycine max HOM05D008250 ORTHO05D010361 1.0e-13 79.3 38 97.4
AL8G43594 Arabidopsis lyrata HOM05D008250 ORTHO05D010361 1.3e-13 79.0 56 71.4
Carub.0008s2677 Capsella rubella HOM05D008250 ORTHO05D010361 1.3e-13 79.0 56 69.6
CARHR279880 Cardamine hirsuta HOM05D008250 ORTHO05D010361 1.3e-13 79.0 50 78.0
Potri.014G006850 Populus trichocarpa HOM05D008250 ORTHO05D010361 1.3e-13 79.0 47 80.9
PGSC0003DMG400021408 Solanum tuberosum HOM05D008250 ORTHO05D010361 1.7e-13 78.6 51 74.5
AT5G65880 Arabidopsis thaliana HOM05D008250 ORTHO05D010361 2.3e-13 78.2 57 70.2
CsaV3_2G016360 Cucumis sativus L. HOM05D008250 ORTHO05D010361 3.9e-13 77.4 40 90.0
Glyma.17G159100 Glycine max HOM05D008250 ORTHO05D010361 3.9e-13 77.4 37 97.3
Lj4g0012638 Lotus japonicus HOM05D008250 ORTHO05D010361 4.3e-12 73.9 37 89.2
TPR.G3717 Trifolium pratense HOM05D008250 ORTHO05D010361 4.3e-12 73.9 37 89.2
arahy.Tifrunner.gnm1.ann1.IKZ63P Arachis hypogaea HOM05D008250 ORTHO05D010361 1.6e-11 72.0 34 97.1
arahy.Tifrunner.gnm1.ann1.L5XXFX Arachis hypogaea HOM05D008250 ORTHO05D010361 1.6e-11 72.0 34 97.1
Medtr4g097410 Medicago truncatula HOM05D008250 ORTHO05D010361 1.6e-11 72.0 60 61.7
Psat4g080920 Pisum sativum HOM05D008250 ORTHO05D010361 1.6e-11 72.0 36 88.9
CDE02G1785 Ceratophyllum demersum HOM05D008250 ORTHO05D010361 2.8e-11 71.2 53 66.0
SEGI_25339 Sequoiadendron giganteum HOM05D008250 ORTHO05D010361 8.0e-11 69.7 52 61.5
Rhsim08G0091900 Rhododendron simsii HOM05D008250 ORTHO05D010361 5.2e-10 67.0 100 42.0
SGA_v2.0_scaffold15G07489 Striga asiatica HOM05D008250 ORTHO05D010361 3.4e-09 64.3 36 80.6
CSS0002791 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 9.8e-09 62.8 36 77.8
CSS0014718 Camellia sinensis var. sinensis HOM05D008250 ORTHO05D010361 9.8e-09 62.8 36 77.8
Haze_15258 Corylus avellana HOM05D008250 ORTHO05D010361 1.7e-08 62.0 35 82.9
A06p32730 Brassica napus HOM05D008250 ORTHO05D010361 3.2e-07 57.8 38 73.7
Os03g0675700 Oryza sativa ssp. japonica HOM05D008250 ORTHO05D010361 4.1e-07 57.4 49 55.1
Aa31LG1G16230 Aethionema arabicum HOM05D008250 ORTHO05D010361 5.4e-07 57.0 30 83.3


User provided reference genes

Program Settings