Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 0.0e+00 1094.7 532 100.0
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 4.3e-287 990.7 534 90.1
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 7.3e-263 910.2 546 83.9
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 3.1e-253 878.2 532 81.8
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 6.3e-222 774.2 519 71.3
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 7.7e-212 740.7 503 68.2
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 5.0e-211 738.0 521 66.8
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 1.9e-210 736.1 522 67.8
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 1.6e-209 733.0 555 65.6
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 1.4e-208 729.9 523 65.6
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 3.0e-208 728.8 509 68.6
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 7.5e-207 724.2 492 69.7
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 1.7e-206 723.0 522 65.1
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.7e-206 723.0 522 65.9
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 8.3e-206 720.7 517 68.7
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 5.3e-205 718.0 491 69.2
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 2.7e-204 715.7 517 66.9
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 4.5e-204 714.9 502 67.3
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 8.0e-201 704.1 481 68.0
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.3e-198 696.8 481 67.6
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 6.3e-198 694.5 490 64.7
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 2.4e-197 692.6 514 64.2
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 2.4e-197 692.6 574 59.4
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 1.0e-195 687.2 513 62.0
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 8.6e-195 684.1 526 60.1
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.5e-194 683.3 518 63.5
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 2.5e-194 682.6 524 62.4
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 8.0e-193 677.6 586 58.4
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 8.9e-192 674.1 495 64.2
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 2.2e-190 669.5 482 65.4
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 8.3e-190 667.5 479 66.4
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 1.0e-187 660.6 492 64.4
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 2.5e-186 656.0 490 63.3
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 5.6e-186 654.8 526 59.7
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 2.1e-185 652.9 515 61.0
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 4.7e-185 651.7 501 61.7
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 1.4e-184 650.2 451 67.0
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 3.1e-184 649.0 580 58.1
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 2.0e-183 646.4 519 59.2
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 1.4e-181 640.2 503 59.4
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 5.4e-181 638.3 435 67.8
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 7.8e-180 634.4 466 64.6
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 5.0e-179 631.7 497 60.0
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.9e-178 629.8 506 63.0
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 4.3e-178 628.6 494 60.7
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 8.9e-176 620.9 514 57.0
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 3.4e-175 619.0 490 61.0
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 1.3e-171 607.1 513 57.3
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 1.9e-170 603.2 517 60.7
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 3.6e-169 599.0 496 57.1
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 4.7e-169 598.6 486 56.8
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 4.4e-167 592.0 508 54.3
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 1.2e-164 583.9 427 64.4
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 2.3e-163 579.7 407 66.8
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 2.1e-156 556.6 443 58.5
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 2.5e-154 549.7 527 50.7
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 3.2e-149 532.7 420 59.8
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 1.6e-145 520.4 530 49.4
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 6.9e-120 435.3 425 52.2
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 3.3e-114 416.4 512 43.2
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 3.4e-111 406.4 445 46.5
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 2.2e-110 403.7 274 70.1
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 3.0e-99 366.7 515 40.8
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 1.1e-88 331.6 547 38.0
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 1.5e-85 321.2 271 53.9
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 1.5e-82 311.2 274 58.4
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 3.7e-81 306.6 302 49.7
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 5.0e-78 296.2 187 72.7
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 6.6e-78 295.8 210 66.7
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 2.6e-74 283.9 524 37.6
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 5.4e-72 276.2 220 59.1
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 1.3e-70 271.6 362 42.3
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 4.9e-65 253.1 545 32.7
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 8.3e-65 252.3 497 34.0
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 3.4e-50 203.8 525 31.6
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.7e-46 191.4 199 45.7
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 5.1e-46 189.9 124 70.2
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 6.2e-44 183.0 246 39.0
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 1.9e-37 161.4 186 45.7
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 4.8e-28 130.2 85 68.2
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 8.4e-25 119.4 89 62.9
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 6.0e-23 113.2 74 71.6
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 1.8e-22 111.7 88 58.0
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.1e-20 104.8 177 34.5
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 8.1e-20 102.8 491 23.6
PRCOL_00001572 Prasinoderma coloniale HOM05D002360 ORTHO05D006971 2.6e-18 97.8 506 21.7
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 4.2e-16 90.5 76 52.6
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 5.5e-16 90.1 480 23.8
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 7.1e-16 89.7 474 22.8
PRCOL_00001058 Prasinoderma coloniale HOM05D002360 ORTHO05D006971 7.1e-16 89.7 462 24.9
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 9.3e-16 89.4 480 23.5
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 2.1e-15 88.2 476 23.1
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 3.5e-15 87.4 476 22.9
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 3.5e-15 87.4 478 22.6
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.0e-14 85.9 477 22.0
Atru.chr3.1763 Acer truncatum HOM05D002360 ORTHO05D006971 1.3e-14 85.5 473 22.0
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.8e-14 85.1 84 47.6
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 2.3e-14 84.7 477 22.9
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 3.9e-14 84.0 470 21.9
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 3.9e-14 84.0 481 22.7
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 5.1e-14 83.6 481 22.7
VMungo1383G0373 Vigna mungo HOM05D002182 ORTHO05D008382 5.1e-14 83.6 481 22.5
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 6.7e-14 83.2 479 23.4
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 1.1e-13 82.4 483 22.6
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 1.5e-13 82.0 473 22.4
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.5e-13 82.0 478 23.6
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 1.5e-13 82.0 483 22.4
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 1.9e-13 81.6 483 22.2
Phvul.001G264200 Phaseolus vulgaris HOM05D002360 ORTHO05D006971 1.9e-13 81.6 481 21.8
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 1.9e-13 81.6 469 22.4
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.5e-13 81.3 467 21.8
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.5e-13 81.3 467 21.8
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 2.5e-13 81.3 466 22.1
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 2.5e-13 81.3 483 22.4
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 2.5e-13 81.3 483 22.4
Sed0014208 Sechium edule HOM05D002360 ORTHO05D006971 2.5e-13 81.3 483 22.2
THA.LOC104822231 Tarenaya hassleriana HOM05D002360 ORTHO05D006971 2.5e-13 81.3 474 22.4
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 3.3e-13 80.9 483 22.4
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 4.3e-13 80.5 473 22.0
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 4.3e-13 80.5 473 22.0
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 4.3e-13 80.5 479 22.3
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 4.3e-13 80.5 483 22.4
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 4.3e-13 80.5 477 21.6
TWI63G1808 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 4.3e-13 80.5 473 22.0
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 5.7e-13 80.1 473 22.2
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 5.7e-13 80.1 474 21.9
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 5.7e-13 80.1 479 22.5
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 7.4e-13 79.7 471 21.7
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 7.4e-13 79.7 473 22.0
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 9.6e-13 79.3 463 22.7
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 9.6e-13 79.3 477 21.8
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 1.3e-12 79.0 461 21.9
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 1.3e-12 79.0 473 22.0
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 1.3e-12 79.0 477 21.6
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 1.3e-12 79.0 69 55.1
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 1.6e-12 78.6 462 21.9
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 3.7e-12 77.4 473 21.8
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 3.7e-12 77.4 481 22.0
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 4.8e-12 77.0 473 21.6
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 4.8e-12 77.0 491 22.0
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 4.8e-12 77.0 503 24.5
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 6.3e-12 76.6 473 21.6
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 8.2e-12 76.3 481 21.8
Gorai.011G149900 Gossypium raimondii HOM05D002360 ORTHO05D006971 8.2e-12 76.3 481 21.8
AagrBONN_evm.TU.Sc2ySwM_368.2776 Anthoceros agrestis HOM05D002360 ORTHO05D006971 1.4e-11 75.5 482 22.0
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 1.8e-11 75.1 461 21.7
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 1.8e-11 75.1 461 21.5
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 2.4e-11 74.7 461 21.5
Actinidia25995 Actinidia chinensis HOM05D002360 ORTHO05D006971 3.1e-11 74.3 481 21.6
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 3.1e-11 74.3 461 21.3
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 6.9e-11 73.2 461 22.3
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 6.9e-11 73.2 416 22.4
Potri.002G235200 Populus trichocarpa HOM05D002360 ORTHO05D006971 9.0e-11 72.8 432 22.5
TWI38G1596 Tripterygium wilfordii HOM05D002360 ORTHO05D006971 1.2e-10 72.4 481 21.4
Mapoly0108s0060 Marchantia polymorpha HOM05D002360 ORTHO05D006971 1.5e-10 72.0 475 21.7
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 4.5e-10 70.5 476 21.0
SMO141G0153 Selaginella moellendorffii HOM05D002360 ORTHO05D006971 1.0e-09 69.3 473 22.6
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 2.9e-09 67.8 484 21.1
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 5.0e-09 67.0 91 42.9
CDE06G2307 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 8.5e-09 66.2 472 21.2
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 7.9e-07 59.7 409 22.0
ClCG08G014460 Citrullus lanatus HOM05D000461 ORTHO05D006079 1.3e-06 58.9 86 40.7
Medtr3g084830 Medicago truncatula HOM05D002360 ORTHO05D006971 3.9e-06 57.4 288 21.9


User provided reference genes

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