Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 6.1e-280 966.8 487 100.0
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 1.3e-242 842.8 486 87.0
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 2.9e-229 798.5 462 88.1
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 1.3e-205 719.9 465 80.0
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.5e-140 501.9 428 58.6
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 2.1e-139 500.0 425 60.2
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 1.5e-137 493.8 428 58.6
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 1.3e-136 490.7 456 57.5
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 2.8e-136 489.6 422 59.5
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 2.8e-136 489.6 422 59.5
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 3.7e-136 489.2 446 56.7
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 6.3e-136 488.4 445 56.6
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.4e-135 487.3 425 59.3
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.7e-133 480.3 420 57.4
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 3.8e-133 479.2 428 59.1
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 1.9e-132 476.9 428 57.9
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.2e-132 474.9 428 57.7
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 7.2e-132 474.9 420 56.4
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.6e-131 473.8 432 53.9
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 2.7e-131 473.0 421 59.1
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 4.7e-131 472.2 420 56.0
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 6.1e-131 471.9 432 54.9
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 1.4e-130 470.7 428 55.4
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 3.0e-130 469.5 433 53.3
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 4.0e-130 469.2 427 57.4
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 4.4e-129 465.7 421 55.8
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 7.5e-129 464.9 427 56.7
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 2.2e-128 463.4 421 55.8
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 3.5e-126 456.1 432 53.0
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 3.5e-126 456.1 432 53.0
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 3.5e-126 456.1 439 53.5
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 3.5e-126 456.1 429 53.4
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 7.7e-126 454.9 432 52.5
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 7.7e-126 454.9 432 52.5
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 2.9e-125 453.0 466 50.2
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 2.5e-124 449.9 427 55.0
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 5.5e-124 448.7 429 53.4
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 5.5e-124 448.7 425 54.8
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 1.2e-123 447.6 428 54.2
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 2.1e-123 446.8 426 54.0
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 1.0e-122 444.5 421 55.1
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 8.8e-122 441.4 421 54.6
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 2.0e-121 440.3 432 52.3
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 2.6e-121 439.9 426 52.8
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 3.4e-121 439.5 422 53.6
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 3.1e-119 433.0 432 51.4
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 4.1e-119 432.6 424 54.7
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-118 430.3 424 52.6
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 3.5e-118 429.5 424 52.4
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.2e-115 421.0 436 50.0
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 6.1e-115 418.7 438 50.5
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 8.0e-115 418.3 437 50.6
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.7e-112 410.6 430 48.8
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 1.4e-111 407.5 465 47.5
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 7.0e-111 405.2 430 50.0
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 9.2e-111 404.8 425 50.6
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.5e-110 402.9 430 49.8
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 7.8e-110 401.7 438 48.2
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 1.3e-109 401.0 451 47.5
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 3.9e-109 399.4 428 49.3
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 5.0e-109 399.1 358 57.0
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 1.6e-107 394.0 425 49.4
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 8.0e-107 391.7 429 48.0
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.3e-106 390.2 425 49.6
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 6.8e-106 388.7 426 49.5
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 1.3e-104 384.4 439 48.1
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 3.7e-104 382.9 438 45.4
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.6e-102 377.5 427 48.0
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 1.5e-100 370.9 357 53.5
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.9e-100 370.5 421 48.2
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 2.1e-99 367.1 448 46.0
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 7.5e-97 358.6 417 46.8
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 6.4e-96 355.5 374 49.2
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 6.0e-94 349.0 463 43.6
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 1.1e-90 338.2 421 44.2
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 6.8e-90 335.5 423 42.3
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 2.0e-89 334.0 428 44.4
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.6e-86 324.3 430 42.3
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 1.6e-86 324.3 424 44.8
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 2.1e-86 323.9 418 43.8
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 7.8e-86 322.0 426 43.9
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.0e-85 321.6 328 50.9
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 1.0e-85 321.6 424 44.1
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.7e-85 320.9 438 43.6
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 2.3e-85 320.5 423 44.0
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 6.6e-85 318.9 450 40.9
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 4.0e-82 309.7 429 42.4
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 1.7e-80 304.3 420 42.1
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 6.0e-78 295.8 425 40.7
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 2.3e-77 293.9 421 42.5
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 4.3e-76 289.7 440 38.0
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.8e-69 267.7 253 52.2
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 2.5e-68 263.8 293 49.1
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 9.6e-68 261.9 304 46.4
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 1.8e-61 241.1 434 35.7
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.6e-60 235.3 241 51.9
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.2e-56 224.2 222 52.3
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 3.7e-51 206.8 426 32.6
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 7.2e-47 192.6 432 31.5
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 9.7e-44 182.2 196 50.5
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.3e-36 157.1 174 48.3
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.7e-35 153.7 181 44.8
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-29 135.6 178 42.7
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 3.1e-26 124.0 430 23.7
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 1.6e-25 121.7 139 48.2
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 5.9e-25 119.8 212 34.9
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 4.2e-23 113.6 124 47.6
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.2e-23 113.6 124 47.6
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.2e-22 112.1 184 39.7
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.1e-22 111.3 138 44.9
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 4.7e-22 110.2 143 43.4
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 1.4e-21 108.6 226 31.9
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 5.2e-21 106.7 133 48.1
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 5.2e-21 106.7 390 23.6
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 2.2e-19 101.3 120 44.2
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.7e-19 100.5 104 50.0
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 3.1e-18 97.4 123 45.5
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 1.2e-12 79.0 96 46.9
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 6.3e-11 73.2 182 32.4
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 9.1e-10 69.3 117 34.2
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-09 68.2 105 40.0
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 5.9e-09 66.6 283 24.0
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.3e-08 65.5 94 37.2
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 5.0e-08 63.5 94 33.0
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 1.1e-07 62.4 118 29.7
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 1.5e-07 62.0 259 22.8
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 1.9e-07 61.6 142 33.8
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.9e-07 61.6 182 30.8
Lj1g0020612 Lotus japonicus HOM05D004127 ORTHO05D005119 3.3e-07 60.8 112 33.0
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 4.2e-07 60.5 91 35.2
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 9.5e-07 59.3 91 33.0
MSTRG.18089 Avicennia marina HOM05D004127 ORTHO05D005119 9.5e-07 59.3 112 33.9
Cc02_g25250 Coffea canephora HOM05D000300 ORTHO05D000383 9.5e-07 59.3 129 27.9
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 35.2
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 1.6e-06 58.5 101 32.7
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.6e-06 58.5 91 30.8
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.6e-06 58.5 142 37.3
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 2.1e-06 58.2 92 35.9
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 2.1e-06 58.2 102 32.4
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 2.1e-06 58.2 91 35.2
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 2.1e-06 58.2 105 31.4
Rhsim01G0292100 Rhododendron simsii HOM05D004127 ORTHO05D005119 2.8e-06 57.8 105 33.3
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 2.8e-06 57.8 105 32.4
ATR0693G036 Amborella trichopoda HOM05D004127 ORTHO05D005119 3.6e-06 57.4 105 32.4
DCAR_012332 Daucus carota HOM05D004127 ORTHO05D005119 3.6e-06 57.4 91 31.9
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 3.6e-06 57.4 119 30.3
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 3.6e-06 57.4 215 21.9
TPR.G3276 Trifolium pratense HOM05D004127 ORTHO05D005119 3.6e-06 57.4 91 31.9
Nitab4.5_0000563g0220 Nicotiana tabacum HOM05D000300 ORTHO05D000383 4.7e-06 57.0 143 23.1
Nitab4.5_0007060g0020 Nicotiana tabacum HOM05D000300 ORTHO05D000383 4.7e-06 57.0 143 23.1
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 4.7e-06 57.0 102 32.4
Sopen01g035710 Solanum pennellii HOM05D000300 ORTHO05D000383 4.7e-06 57.0 137 23.4
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 4.7e-06 57.0 110 30.0
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 4.7e-06 57.0 110 30.0
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.1e-06 56.6 94 33.0
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 6.1e-06 56.6 105 31.4
BraA06t26809Z Brassica rapa HOM05D001779 ORTHO05D001753 8.0e-06 56.2 198 24.7
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 8.0e-06 56.2 102 32.4


User provided reference genes

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