Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 2.7e-88 328.6 159 100.0
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 3.0e-79 298.5 160 92.5
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 8.8e-79 297.0 160 91.2
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 4.4e-70 268.1 160 84.4
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 9.8e-54 213.8 155 65.2
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 6.3e-53 211.1 155 65.2
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 1.2e-51 206.8 164 64.0
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 2.0e-51 206.1 145 66.9
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 1.3e-50 203.4 154 64.3
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 2.1e-48 196.1 154 61.0
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 2.8e-48 195.7 158 62.0
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.6e-48 195.3 154 64.3
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 4.7e-48 194.9 143 67.8
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 6.8e-47 191.0 155 63.9
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 1.5e-46 189.9 155 59.4
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 2.0e-46 189.5 155 59.4
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 4.4e-46 188.3 157 60.5
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 5.8e-46 188.0 162 59.9
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 9.8e-46 187.2 159 60.4
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.3e-45 186.8 161 57.8
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.3e-45 186.8 161 57.8
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 3.7e-45 185.3 154 61.0
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 6.4e-45 184.5 155 58.1
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 6.4e-45 184.5 162 59.3
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 1.4e-44 183.3 161 55.9
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 5.4e-44 181.4 155 59.4
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 9.2e-44 180.6 159 59.1
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.2e-43 180.3 144 64.6
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.0e-43 179.5 155 60.0
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 3.5e-43 178.7 153 55.6
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 6.0e-43 177.9 124 66.9
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.0e-43 177.9 127 66.9
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 1.0e-42 177.2 124 66.9
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.9e-42 175.3 133 64.7
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 3.9e-42 175.3 133 62.4
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 6.6e-42 174.5 158 55.7
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 2.5e-41 172.6 154 57.8
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 3.3e-41 172.2 155 58.7
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 2.1e-40 169.5 162 55.6
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.8e-40 169.1 161 58.4
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.6e-40 168.7 154 57.1
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 3.6e-40 168.7 158 56.3
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 1.4e-39 166.8 158 55.1
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 1.8e-39 166.4 157 58.6
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 1.8e-39 166.4 152 59.9
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.3e-39 166.0 156 50.0
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 2.3e-39 166.0 130 58.5
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 4.0e-39 165.2 137 63.5
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 4.0e-39 165.2 137 63.5
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 1.3e-37 160.2 147 59.9
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 3.7e-37 158.7 161 51.6
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 4.9e-37 158.3 150 55.3
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 6.4e-37 157.9 132 59.1
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 2.4e-36 156.0 136 59.6
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.4e-36 156.0 157 49.7
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 3.2e-36 155.6 140 59.3
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 4.1e-36 155.2 155 52.9
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 5.4e-36 154.8 160 51.2
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 5.4e-36 154.8 133 58.6
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 7.1e-36 154.5 133 60.9
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 2.1e-35 152.9 149 51.7
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 2.1e-35 152.9 156 51.9
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 2.7e-35 152.5 162 50.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 4.6e-35 151.8 142 55.6
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 1.5e-33 146.7 142 57.7
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 1.9e-33 146.4 134 55.2
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 3.3e-33 145.6 126 59.5
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 4.3e-33 145.2 94 72.3
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 5.6e-33 144.8 155 56.1
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 9.5e-33 144.1 164 49.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 9.5e-33 144.1 156 51.9
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 1.2e-32 143.7 135 57.0
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 3.6e-32 142.1 150 50.0
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 2.3e-31 139.4 135 49.6
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 4.0e-31 138.7 141 49.6
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 6.8e-31 137.9 141 49.6
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 1.2e-30 137.1 121 56.2
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 1.5e-30 136.7 150 48.7
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 2.0e-30 136.3 132 55.3
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 2.6e-30 136.0 123 56.1
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 3.4e-30 135.6 110 60.0
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 3.4e-30 135.6 128 55.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 5.8e-30 134.8 135 54.8
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 5.8e-30 134.8 162 48.1
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 7.6e-30 134.4 133 54.1
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 7.6e-30 134.4 162 48.1
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 1.3e-29 133.7 133 53.4
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 2.2e-29 132.9 132 54.5
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 3.7e-29 132.1 120 57.5
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.7e-29 132.1 151 45.7
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 1.4e-28 130.2 130 56.2
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 4.1e-28 128.6 116 56.9
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 5.4e-28 128.3 118 56.8
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 5.4e-28 128.3 118 56.8
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 9.2e-28 127.5 123 55.3
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 1.6e-27 126.7 119 56.3
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.6e-27 126.7 86 65.1
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 2.1e-27 126.3 119 55.5
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 4.6e-27 125.2 156 42.9
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 6.0e-27 124.8 143 47.6
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 1.0e-26 124.0 146 50.7
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 2.3e-26 122.9 142 48.6
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 5.1e-26 121.7 142 47.2
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 1.9e-25 119.8 114 57.0
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 4.3e-25 118.6 134 50.7
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.1e-24 116.3 153 49.7
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 3.6e-24 115.5 122 47.5
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 4.7e-24 115.2 131 50.4
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.8e-23 113.2 69 69.6
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 1.5e-22 110.2 88 55.7
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.3e-21 107.1 121 51.2
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 3.8e-21 105.5 114 52.6
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 4.9e-21 105.1 152 44.1
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.1e-20 104.0 151 40.4
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 1.9e-20 103.2 102 51.0
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 3.2e-20 102.4 127 47.2
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 3.2e-20 102.4 145 41.4
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 4.2e-20 102.1 143 44.8
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 9.3e-20 100.9 68 63.2
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 6.0e-19 98.2 142 44.4
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 7.8e-19 97.8 160 36.9
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.0e-18 97.4 125 43.2
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.7e-18 96.7 119 47.9
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 1.7e-18 96.7 118 49.2
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 1.7e-18 96.7 121 46.3
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 2.3e-18 96.3 118 47.5
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.0e-18 95.9 139 43.9
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 5.1e-18 95.1 118 48.3
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 5.1e-18 95.1 118 48.3
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 5.1e-18 95.1 118 48.3
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 3.3e-17 92.4 126 44.4
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.4e-15 87.0 130 44.6
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 4.0e-15 85.5 53 66.0
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 5.8e-14 81.6 129 43.4
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.3e-13 80.5 126 42.1
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 2.2e-13 79.7 49 71.4
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-12 77.4 136 34.6
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 3.5e-11 72.4 85 50.6
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 7.9e-11 71.2 111 37.8
Dinv13785 Davidia involucrata HOM05D005114 ORTHO05D006301 1.3e-08 63.9 51 52.9
Thhalv10021664m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 2.8e-08 62.8 85 44.7
Dinv11287 Davidia involucrata HOM05D005114 ORTHO05D006301 8.1e-08 61.2 47 55.3


User provided reference genes

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