Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 0.0e+00 1222.6 620 100.0
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 0.0e+00 1077.8 604 91.7
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 9.3e-310 1066.2 605 91.1
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 5.3e-297 1023.8 612 84.0
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 3.3e-254 881.7 602 75.2
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 4.7e-253 877.9 607 73.8
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 8.0e-253 877.1 600 76.5
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 8.0e-253 877.1 607 73.1
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.0e-252 876.7 602 74.4
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 8.9e-252 873.6 598 75.3
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.0e-251 872.5 602 74.3
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.2e-250 869.0 604 73.8
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.2e-250 869.0 604 73.8
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 1.1e-249 866.7 604 73.7
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 1.1e-249 866.7 597 74.2
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 1.4e-249 866.3 615 71.9
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.2e-249 863.6 602 73.3
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 1.6e-248 862.8 594 74.9
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 1.6e-248 862.8 600 73.7
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 2.0e-248 862.4 600 73.7
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 5.0e-247 857.8 600 71.7
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 3.3e-246 855.1 601 72.5
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 7.3e-246 854.0 591 75.0
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 9.5e-246 853.6 588 73.3
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 9.5e-246 853.6 597 74.7
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 1.6e-245 852.8 611 73.2
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 2.1e-245 852.4 602 72.8
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 3.6e-245 851.7 587 73.3
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 6.8e-244 847.4 604 71.5
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 1.9e-241 839.3 593 72.7
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 5.4e-241 837.8 587 72.2
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.1e-240 835.9 588 72.6
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 3.5e-240 835.1 588 72.8
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 3.0e-239 832.0 591 71.2
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 6.6e-239 830.9 602 71.3
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.5e-238 828.9 588 72.1
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 7.3e-238 827.4 600 73.8
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 9.5e-238 827.0 588 71.9
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 6.2e-237 824.3 591 69.7
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.4e-236 823.2 589 71.5
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.0e-236 821.6 589 71.6
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.0e-236 821.6 589 71.6
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 6.8e-236 820.8 583 71.4
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.2e-234 815.8 597 70.7
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 6.4e-234 814.3 610 69.2
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 6.4e-234 814.3 588 71.3
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 6.4e-234 814.3 595 69.1
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 1.9e-233 812.8 604 72.2
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 1.9e-233 812.8 605 68.8
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 2.4e-233 812.4 592 69.9
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 4.1e-233 811.6 632 66.5
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 5.4e-233 811.2 601 69.1
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 7.1e-233 810.8 626 67.3
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 9.2e-233 810.4 611 67.8
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.2e-232 810.1 595 69.2
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 2.1e-232 809.3 583 69.6
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.0e-231 807.0 585 70.1
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.3e-231 806.6 601 67.9
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 2.3e-231 805.8 596 69.1
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 3.0e-231 805.4 608 68.9
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 3.9e-231 805.1 599 68.9
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 3.9e-231 805.1 600 71.2
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 9.6e-230 800.4 597 67.5
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 1.4e-228 796.6 594 68.5
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 3.4e-227 792.0 601 67.1
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 9.9e-227 790.4 588 68.4
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 9.9e-227 790.4 593 69.0
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.7e-226 789.6 598 67.9
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 4.9e-226 788.1 601 66.6
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 4.9e-226 788.1 583 69.5
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.4e-225 786.6 601 66.6
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.4e-225 786.6 607 68.4
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 3.2e-225 785.4 601 66.6
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 4.2e-225 785.0 599 66.9
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 4.6e-224 781.6 603 65.8
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.9e-222 776.2 628 65.3
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 6.2e-221 771.2 588 68.2
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 2.4e-220 769.2 585 67.5
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 6.2e-205 718.0 604 62.7
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 1.7e-202 709.9 586 63.7
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.9e-201 706.4 489 73.2
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 3.3e-198 695.7 485 72.2
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 5.3e-196 688.3 585 62.2
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.2e-192 677.2 676 55.2
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 3.2e-185 652.5 497 70.4
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 3.0e-183 646.0 424 77.1
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 4.8e-181 638.6 419 75.7
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 1.2e-176 624.0 649 53.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 3.9e-175 619.0 406 75.4
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.0e-167 592.8 438 69.6
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.0e-167 592.4 635 52.0
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.0e-167 592.4 635 52.0
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 8.2e-165 584.7 435 69.7
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 2.7e-163 579.7 417 69.8
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 8.5e-162 574.7 404 70.8
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 1.6e-155 553.9 425 67.8
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 2.5e-153 546.6 615 51.5
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.9e-146 523.1 427 63.9
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 6.8e-143 511.9 569 49.2
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.9e-132 477.2 333 74.8
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 3.3e-129 466.5 330 70.9
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 3.7e-125 453.0 313 71.2
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 2.6e-118 430.3 595 44.2
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 1.7e-109 401.0 682 36.7
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 9.3e-108 395.2 239 84.5
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.3e-88 331.6 197 84.8
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 1.8e-74 284.6 164 87.2
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.9e-69 267.3 563 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.7e-61 241.5 423 37.4
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 2.8e-56 224.2 152 75.0
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 1.8e-50 204.9 160 66.9
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.4e-47 195.3 117 79.5
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 2.2e-45 188.0 113 79.6
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.1e-44 185.7 151 66.9
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 3.2e-44 184.1 103 86.4
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.2e-41 175.6 104 80.8
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.2e-30 139.0 173 49.1
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 2.9e-24 117.9 68 83.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.0e-15 86.7 54 74.1
Os08g0523850 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D008184 8.3e-08 63.2 148 33.8
Os08g0226800 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 4.6e-06 57.4 124 33.9
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 7.8e-06 56.6 580 22.2
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 7.8e-06 56.6 72 40.3


User provided reference genes

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