Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G009490 Citrullus lanatus HOM05D007186 ORTHO05D008970 1.7e-120 436.0 221 100.0
MELO3C019365.2 Cucumis melo HOM05D007186 ORTHO05D008970 2.1e-70 269.6 222 66.7
CsaV3_6G009340 Cucumis sativus L. HOM05D007186 ORTHO05D008970 3.0e-69 265.8 222 66.2
Sed0024069 Sechium edule HOM05D007186 ORTHO05D008970 1.1e-50 204.1 196 59.2
Prupe.3G204800 Prunus persica HOM05D007186 ORTHO05D008970 2.2e-48 196.4 205 52.2
FvH4_6g41490 Fragaria vesca HOM05D007186 ORTHO05D008970 5.5e-47 191.8 198 51.5
FAN05G2361 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.6e-46 190.3 198 51.5
Phvul.008G287400 Phaseolus vulgaris HOM05D007186 ORTHO05D008970 1.6e-46 190.3 214 51.9
VMungo0647G1315 Vigna mungo HOM05D007186 ORTHO05D008970 1.6e-46 190.3 214 51.9
Potri.014G162700 Populus trichocarpa HOM05D007186 ORTHO05D008970 4.7e-46 188.7 207 49.3
RcHm_v2.0_Chr2g0157151 Rosa chinensis HOM05D007186 ORTHO05D008970 6.1e-46 188.3 203 51.2
AUR62017547 Chenopodium quinoa HOM05D007186 ORTHO05D008970 8.0e-46 188.0 215 49.8
QL08p029418 Quercus lobata HOM05D007186 ORTHO05D008970 2.3e-45 186.4 217 46.1
Medtr5g097970 Medicago truncatula HOM05D007186 ORTHO05D008970 4.0e-45 185.7 203 50.7
FAN09G3526 Fragaria x ananassa HOM05D007186 ORTHO05D008970 6.8e-45 184.9 198 52.0
TWI36G0211 Tripterygium wilfordii HOM05D007186 ORTHO05D008970 6.8e-45 184.9 217 47.5
AUR62015089 Chenopodium quinoa HOM05D007186 ORTHO05D008970 8.8e-45 184.5 215 49.3
AUR62044229 Chenopodium quinoa HOM05D007186 ORTHO05D008970 8.8e-45 184.5 215 49.3
AUR62044345 Chenopodium quinoa HOM05D007186 ORTHO05D008970 8.8e-45 184.5 215 49.3
Gohir.D07G195800 Gossypium hirsutum HOM05D007186 ORTHO05D008970 8.8e-45 184.5 216 49.5
COL.COLO4_06941 Corchorus olitorius HOM05D007186 ORTHO05D008970 1.5e-44 183.7 208 48.6
Ciclev10016992m.g Citrus clementina HOM05D007186 ORTHO05D008970 2.0e-44 183.3 214 48.6
Gorai.001G219300 Gossypium raimondii HOM05D007186 ORTHO05D008970 2.6e-44 183.0 216 49.1
Atru.chr6.3329 Acer truncatum HOM05D007186 ORTHO05D008970 3.4e-44 182.6 216 46.8
CiPaw.04G194300 Carya illinoinensis HOM05D007186 ORTHO05D008970 3.4e-44 182.6 207 47.3
MD09G1119400 Malus domestica HOM05D007186 ORTHO05D008970 4.4e-44 182.2 214 50.0
Nitab4.5_0011275g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 4.4e-44 182.2 202 50.5
CSS0038956 Camellia sinensis var. sinensis HOM05D007186 ORTHO05D008970 7.5e-44 181.4 209 48.8
Dinv07835 Davidia involucrata HOM05D007186 ORTHO05D008970 7.5e-44 181.4 213 48.4
Glyma.02G307400 Glycine max HOM05D007186 ORTHO05D008970 7.5e-44 181.4 209 50.7
Sabra14G0124100 Salix brachista HOM05D007186 ORTHO05D008970 7.5e-44 181.4 206 48.1
Eucgr.K00670 Eucalyptus grandis HOM05D007186 ORTHO05D008970 1.7e-43 180.3 221 47.1
Haze_12721 Corylus avellana HOM05D007186 ORTHO05D008970 2.2e-43 179.9 255 42.0
TPR.G15068 Trifolium pratense HOM05D007186 ORTHO05D008970 2.2e-43 179.9 207 48.3
Rhsim06G0171800 Rhododendron simsii HOM05D007186 ORTHO05D008970 1.1e-42 177.6 200 49.5
PGSC0003DMG400030273 Solanum tuberosum HOM05D007186 ORTHO05D008970 1.8e-42 176.8 203 48.8
CANSAT54G2500 Cannabis sativa HOM05D007186 ORTHO05D008970 3.1e-42 176.0 201 47.3
Sopen05g025420 Solanum pennellii HOM05D007186 ORTHO05D008970 4.1e-42 175.6 203 47.8
Nitab4.5_0002877g0030 Nicotiana tabacum HOM05D007186 ORTHO05D008970 7.0e-42 174.9 212 47.6
Peaxi162Scf00147g01818 Petunia axillaris HOM05D007186 ORTHO05D008970 7.0e-42 174.9 217 45.6
GSVIVG01030422001 Vitis vinifera HOM05D007186 ORTHO05D008970 7.0e-42 174.9 216 47.7
PSO675G5362 Papaver somniferum HOM05D007186 ORTHO05D008970 9.2e-42 174.5 198 46.0
Solyc05g041430.3 Solanum lycopersicum HOM05D007186 ORTHO05D008970 1.2e-41 174.1 203 47.3
Hund24136 Selenicereus undatus HOM05D007186 ORTHO05D008970 4.5e-41 172.2 214 46.3
Actinidia07891 Actinidia chinensis HOM05D007186 ORTHO05D008970 1.7e-40 170.2 185 49.2
THA.LOC104808856 Tarenaya hassleriana HOM05D007186 ORTHO05D008970 3.3e-39 166.0 202 44.1
Hma1.2p1_0133F.1_g061060 Hydrangea macrophylla HOM05D007186 ORTHO05D008970 7.3e-39 164.9 186 48.4
Psat2g003840 Pisum sativum HOM05D007186 ORTHO05D008970 7.3e-39 164.9 214 45.3
PGR142G1014 Punica granatum HOM05D007186 ORTHO05D008970 7.3e-39 164.9 203 46.3
Lalb_Chr04g0247191 Lupinus albus HOM05D007186 ORTHO05D008970 1.2e-38 164.1 198 46.5
Duzib138G0377 Durio zibethinus HOM05D007186 ORTHO05D008970 2.8e-38 162.9 188 46.8
TAR624G0839 Trochodendron aralioides HOM05D007186 ORTHO05D008970 4.7e-38 162.2 198 47.0
ECA240G1183 Erigeron canadensis HOM05D007186 ORTHO05D008970 3.0e-37 159.5 207 42.5
AL3G42380 Arabidopsis lyrata HOM05D007186 ORTHO05D008970 5.2e-37 158.7 213 40.4
LjContig00081g0025535 Lotus japonicus HOM05D000229 ORTHO05D008970 6.8e-37 158.3 196 46.4
MBI19_g06151_MAGBIO Magnolia biondii HOM05D007186 ORTHO05D008970 1.5e-36 157.1 183 47.5
Aqoxy1G02832 Aquilegia oxysepala HOM05D007186 ORTHO05D008970 2.0e-36 156.8 205 41.5
Carub.0003s2639 Capsella rubella HOM05D007186 ORTHO05D008970 2.6e-36 156.4 213 40.4
arahy.Tifrunner.gnm1.ann1.HI5B62 Arachis hypogaea HOM05D007186 ORTHO05D008970 2.2e-35 153.3 206 43.7
Glyma.14G005600 Glycine max HOM05D007186 ORTHO05D008970 8.3e-35 151.4 199 47.2
C03p55060 Brassica napus HOM05D007186 ORTHO05D008970 2.4e-34 149.8 213 39.9
BolC3t17781H Brassica oleracea HOM05D007186 ORTHO05D008970 2.4e-34 149.8 213 39.9
BcaC01g03189 Brassica carinata HOM05D007186 ORTHO05D008970 3.2e-34 149.4 213 40.4
HPP92_022801 Vanilla planifolia HOM05D007186 ORTHO05D008970 4.1e-34 149.1 197 44.7
unitig_578.g16640 Utricularia gibba HOM05D007186 ORTHO05D008970 5.4e-34 148.7 218 38.5
Manes.13G063846 Manihot esculenta HOM05D007186 ORTHO05D008970 9.2e-34 147.9 200 44.5
Lsat_1_v5_gn_9_105540 Lactuca sativa HOM05D007186 ORTHO05D008970 1.6e-33 147.1 219 41.1
ATR0712G003 Amborella trichopoda HOM05D007186 ORTHO05D008970 2.0e-33 146.7 191 42.4
Thhalv10002690m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 2.0e-33 146.7 217 39.2
Sp3g23400 Schrenkiella parvula HOM05D007186 ORTHO05D008970 3.5e-33 146.0 202 40.1
HanXRQChr03g0075731 Helianthus annuus HOM05D007186 ORTHO05D008970 7.8e-33 144.8 215 40.5
arahy.Tifrunner.gnm1.ann1.CRYT1U Arachis hypogaea HOM05D007186 ORTHO05D008970 1.0e-32 144.4 219 41.1
BraA03t13576Z Brassica rapa HOM05D007186 ORTHO05D008970 3.9e-32 142.5 210 39.5
Lj8A132T57 Lonicera japonica HOM05D007186 ORTHO05D008970 3.9e-32 142.5 221 40.7
AUR62044292 Chenopodium quinoa HOM05D007186 ORTHO05D008970 5.0e-32 142.1 211 42.7
A03p44430 Brassica napus HOM05D007186 ORTHO05D008970 6.6e-32 141.7 210 39.5
BcaC01g03185 Brassica carinata HOM05D007186 ORTHO05D008970 2.1e-30 136.7 214 37.9
CARHR102760 Cardamine hirsuta HOM05D007186 ORTHO05D008970 2.1e-30 136.7 198 38.4
C03p55120 Brassica napus HOM05D007186 ORTHO05D008970 2.8e-30 136.3 210 37.6
BolC3t17784H Brassica oleracea HOM05D007186 ORTHO05D008970 8.0e-30 134.8 214 37.9
Zm00001eb245650 Zea mays HOM05D007186 ORTHO05D008970 5.8e-28 128.6 188 39.9
BcaB08g34487 Brassica carinata HOM05D007186 ORTHO05D008970 6.4e-27 125.2 190 37.9
FAN14G0401 Fragaria x ananassa HOM05D007186 ORTHO05D008970 1.4e-26 124.0 77 79.2
Os02g0588600 Oryza sativa ssp. japonica HOM05D007186 ORTHO05D008970 7.0e-26 121.7 204 37.7
Migut.M00010 Erythranthe guttata HOM05D007186 ORTHO05D008970 9.2e-26 121.3 203 40.4
Gohir.A07G189700 Gossypium hirsutum HOM05D007186 ORTHO05D008970 1.2e-25 120.9 92 72.8
Oeu040479.1 Olea europaea HOM05D007186 ORTHO05D008970 1.6e-25 120.6 167 43.7
BcaC01g03187 Brassica carinata HOM05D007186 ORTHO05D008970 2.7e-25 119.8 180 37.8
FAN02G3692 Fragaria x ananassa HOM05D007186 ORTHO05D008970 3.5e-25 119.4 77 77.9
SEGI_21441 Sequoiadendron giganteum HOM05D007186 ORTHO05D008970 5.0e-24 115.5 197 36.0
EL10Ac9g22768 Beta vulgaris HOM05D007186 ORTHO05D008970 6.6e-24 115.2 87 70.1
vmacro12130 Vaccinium macrocarpon HOM05D007186 ORTHO05D008970 1.9e-23 113.6 82 72.0
MSTRG.6661 Avicennia marina HOM05D007186 ORTHO05D008970 5.6e-23 112.1 83 72.3
DCAR_032166 Daucus carota HOM05D000693 ORTHO05D008970 5.6e-23 112.1 147 44.2
SalBow7G1582 Salvia bowleyana HOM05D000037 ORTHO05D000150 7.3e-23 111.7 197 38.6
Aa31sc53G20 Aethionema arabicum HOM05D007186 ORTHO05D006113 1.2e-22 110.9 218 32.1
Thecc.01G185600 Theobroma cacao HOM05D007186 ORTHO05D008970 1.6e-22 110.5 83 68.7
Nn1g07413 Nelumbo nucifera HOM05D007186 ORTHO05D008970 1.4e-18 97.4 73 60.3
Eucgr.K00669 Eucalyptus grandis HOM05D007186 ORTHO05D008970 1.2e-17 94.4 98 44.9
AUR62025215 Chenopodium quinoa HOM05D007186 ORTHO05D008970 4.6e-17 92.4 75 65.3
Sc20g0003870 Simmondsia chinensis HOM05D007186 ORTHO05D008970 8.1e-14 81.6 144 30.6
arahy.Tifrunner.gnm1.ann1.I316DY Arachis hypogaea HOM05D007186 ORTHO05D008970 2.3e-13 80.1 134 35.8
AT2G04790 Arabidopsis thaliana HOM05D007186 ORTHO05D008970 5.2e-13 79.0 67 58.2
SMO364G0535 Selaginella moellendorffii HOM05D007186 ORTHO05D008970 8.9e-13 78.2 188 30.3
Sopen05g025410 Solanum pennellii HOM05D007186 ORTHO05D008970 4.4e-12 75.9 43 86.0
Pp3c15_5880 Physcomitrium patens HOM05D007186 ORTHO05D008970 5.8e-12 75.5 207 30.0
Mapoly0123s0026 Marchantia polymorpha HOM05D007186 ORTHO05D008970 7.6e-12 75.1 208 27.9
arahy.Tifrunner.gnm1.ann1.ZIY68Y Arachis hypogaea HOM05D007186 ORTHO05D008970 9.9e-12 74.7 131 34.4
arahy.Tifrunner.gnm1.ann1.5R4F72 Arachis hypogaea HOM05D007186 ORTHO05D008970 7.8e-09 65.1 158 30.4
MD17G1110300 Malus domestica HOM05D007186 ORTHO05D008970 8.6e-08 61.6 45 71.1
Thhalv10002943m.g Eutrema salsugineum HOM05D007186 ORTHO05D008970 9.6e-07 58.2 76 39.5


User provided reference genes

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