Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G009290 Citrullus lanatus HOM05D005756 ORTHO05D007991 3.4e-253 877.9 449 100.0
CsaV3_6G009540 Cucumis sativus L. HOM05D005756 ORTHO05D007991 4.9e-236 820.8 449 89.3
MELO3C025971.2 Cucumis melo HOM05D005756 ORTHO05D007991 6.5e-236 820.5 449 92.2
Sed0018608 Sechium edule HOM05D005756 ORTHO05D007991 4.5e-213 744.6 428 84.6
Sed0020254 Sechium edule HOM05D005756 ORTHO05D007991 5.3e-206 721.1 449 83.5
FAN05G2330 Fragaria x ananassa HOM05D005756 ORTHO05D007991 4.3e-171 605.1 427 68.1
FAN09G1647 Fragaria x ananassa HOM05D005756 ORTHO05D007991 1.5e-168 596.7 427 67.0
FvH4_6g40720 Fragaria vesca HOM05D005756 ORTHO05D007991 9.8e-168 594.0 427 67.0
FAN14G2144 Fragaria x ananassa HOM05D005756 ORTHO05D007991 8.3e-167 590.9 427 66.7
RcHm_v2.0_Chr2g0156171 Rosa chinensis HOM05D005756 ORTHO05D007991 1.7e-164 583.2 426 66.2
Thecc.01G193500 Theobroma cacao HOM05D005756 ORTHO05D007991 7.5e-160 567.8 430 64.2
Haze_12636 Corylus avellana HOM05D005756 ORTHO05D007991 5.4e-158 561.6 428 63.3
MD09G1126000 Malus domestica HOM05D005756 ORTHO05D007991 6.0e-157 558.1 427 64.6
Gorai.001G221400 Gossypium raimondii HOM05D005756 ORTHO05D007991 5.6e-155 551.6 427 62.5
Duzib133G1068 Durio zibethinus HOM05D005756 ORTHO05D007991 7.3e-155 551.2 427 63.7
Gohir.A07G191400 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.1e-153 545.8 427 61.8
Gorai.001G191800 Gossypium raimondii HOM05D005756 ORTHO05D007991 3.1e-153 545.8 427 60.9
Manes.12G064800 Manihot esculenta HOM05D005756 ORTHO05D007991 3.1e-153 545.8 438 63.7
Prupe.3G198700 Prunus persica HOM05D005756 ORTHO05D007991 4.0e-153 545.4 436 63.1
Gohir.A07G164300 Gossypium hirsutum HOM05D005756 ORTHO05D007991 5.2e-153 545.0 427 60.9
Gohir.D07G171500 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.2e-152 543.9 427 60.9
Manes.13G062400 Manihot esculenta HOM05D005756 ORTHO05D007991 3.4e-152 542.3 439 61.5
Duzib211G0508 Durio zibethinus HOM05D005756 ORTHO05D007991 1.7e-151 540.0 427 61.6
COL.COLO4_33341 Corchorus olitorius HOM05D005756 ORTHO05D007991 3.8e-151 538.9 430 62.6
Peaxi162Scf00218g00178 Petunia axillaris HOM05D005756 ORTHO05D007991 1.2e-149 533.9 433 61.0
Potri.014G166400 Populus trichocarpa HOM05D005756 ORTHO05D007991 2.7e-149 532.7 435 62.1
Ciclev10018016m.g Citrus clementina HOM05D005756 ORTHO05D007991 1.0e-148 530.8 438 62.8
Sabra14G0126700 Salix brachista HOM05D005756 ORTHO05D007991 1.3e-148 530.4 435 61.6
CiPaw.03G281000 Carya illinoinensis HOM05D005756 ORTHO05D007991 1.7e-148 530.0 430 62.6
Nn1g03213 Nelumbo nucifera HOM05D005756 ORTHO05D007991 2.5e-147 526.2 431 60.6
Oeu021293.1 Olea europaea HOM05D005756 ORTHO05D007991 4.3e-147 525.4 428 59.6
GSVIVG01030075001 Vitis vinifera HOM05D005756 ORTHO05D007991 1.2e-146 523.9 432 61.6
Nitab4.5_0000006g0690 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.9e-145 518.1 423 59.6
CAN.G60.7 Capsicum annuum HOM05D005756 ORTHO05D007991 3.4e-144 515.8 430 59.8
Peaxi162Scf00802g00236 Petunia axillaris HOM05D005756 ORTHO05D007991 5.8e-144 515.0 438 57.1
PGR042G1143 Punica granatum HOM05D005756 ORTHO05D007991 5.8e-144 515.0 420 61.7
AT5G35770 Arabidopsis thaliana HOM05D005756 ORTHO05D007991 9.9e-144 514.2 432 59.0
QL08p028191 Quercus lobata HOM05D005756 ORTHO05D007991 9.9e-144 514.2 453 59.6
AL7G44670 Arabidopsis lyrata HOM05D005756 ORTHO05D007991 2.9e-143 512.7 432 58.8
Carub.0007s3155 Capsella rubella HOM05D005756 ORTHO05D007991 2.9e-143 512.7 432 59.3
Solyc05g041220.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 1.4e-142 510.4 439 58.5
CSS0006225 Camellia sinensis var. sinensis HOM05D005756 ORTHO05D007991 7.1e-142 508.1 436 59.6
Nitab4.5_0010487g0010 Nicotiana tabacum HOM05D005756 ORTHO05D007991 9.3e-142 507.7 423 58.9
Sp7g06350 Schrenkiella parvula HOM05D005756 ORTHO05D007991 1.3e-140 503.8 433 58.7
Actinidia35206 Actinidia chinensis HOM05D005756 ORTHO05D007991 3.0e-140 502.7 430 59.1
THA.LOC104815437 Tarenaya hassleriana HOM05D005756 ORTHO05D007991 5.1e-140 501.9 434 58.5
TAR629G3088 Trochodendron aralioides HOM05D005756 ORTHO05D007991 5.1e-140 501.9 431 58.2
CANSAT64G2821 Cannabis sativa HOM05D005756 ORTHO05D007991 1.9e-139 500.0 431 58.5
BcaB06g26996 Brassica carinata HOM05D005756 ORTHO05D007991 2.5e-139 499.6 433 58.2
Aa31sc373G50 Aethionema arabicum HOM05D005756 ORTHO05D007991 1.3e-138 497.3 435 57.9
A04p10010 Brassica napus HOM05D005756 ORTHO05D007991 2.1e-138 496.5 433 58.0
BraA04t16663Z Brassica rapa HOM05D005756 ORTHO05D007991 2.1e-138 496.5 433 58.0
BolC4t25929H Brassica oleracea HOM05D005756 ORTHO05D007991 2.8e-138 496.1 433 58.0
MD17G1116000 Malus domestica HOM05D005756 ORTHO05D007991 2.8e-138 496.1 376 63.6
Rhsim04G0027400 Rhododendron simsii HOM05D005756 ORTHO05D007991 6.2e-138 495.0 467 53.7
BcaC02g09499 Brassica carinata HOM05D005756 ORTHO05D007991 1.1e-137 494.2 433 57.7
C04p43490 Brassica napus HOM05D005756 ORTHO05D007991 1.8e-137 493.4 433 57.7
Actinidia18810 Actinidia chinensis HOM05D005756 ORTHO05D007991 1.3e-135 487.3 431 57.1
Gohir.D07G197700 Gossypium hirsutum HOM05D005756 ORTHO05D007991 1.7e-135 486.9 377 61.5
SalBow1G0676 Salvia bowleyana HOM05D005756 ORTHO05D007991 2.2e-135 486.5 425 57.4
Migut.K00325 Erythranthe guttata HOM05D005756 ORTHO05D007991 5.4e-134 481.9 439 57.6
Oeu052200.1 Olea europaea HOM05D005756 ORTHO05D007991 9.3e-134 481.1 472 53.6
Sc21g0000630 Simmondsia chinensis HOM05D005756 ORTHO05D007991 1.6e-133 480.3 414 58.0
PSO675G1451 Papaver somniferum HOM05D005756 ORTHO05D007991 1.8e-132 476.9 431 56.6
SalBow1G7885 Salvia bowleyana HOM05D005756 ORTHO05D007991 4.3e-131 472.2 418 58.1
PSO541G4672 Papaver somniferum HOM05D005756 ORTHO05D007991 4.8e-130 468.8 431 55.7
Lsat_1_v5_gn_7_97180 Lactuca sativa HOM05D005756 ORTHO05D007991 5.8e-128 461.8 439 51.7
SHI10154 Sapria himalayana HOM05D005756 ORTHO05D007991 7.6e-128 461.5 491 51.1
Dinv26618 Davidia involucrata HOM05D005756 ORTHO05D007991 4.9e-127 458.8 430 56.5
Thhalv10005699m.g Eutrema salsugineum HOM05D005756 ORTHO05D007991 1.1e-126 457.6 398 57.5
Hma1.2p1_0545F.1_g176030 Hydrangea macrophylla HOM05D005756 ORTHO05D007991 2.5e-126 456.4 383 59.8
Nitab4.5_0005267g0030 Nicotiana tabacum HOM05D005756 ORTHO05D007991 6.0e-125 451.8 385 56.1
vmacro09483 Vaccinium macrocarpon HOM05D005756 ORTHO05D007991 5.1e-124 448.7 383 56.4
Aqoxy4G02252 Aquilegia oxysepala HOM05D005756 ORTHO05D007991 4.3e-123 445.7 437 54.5
HanXRQChr11g0328881 Helianthus annuus HOM05D005756 ORTHO05D007991 3.7e-122 442.6 438 50.9
TPR.G1270 Trifolium pratense HOM05D005756 ORTHO05D007991 4.8e-122 442.2 441 52.8
Psat2g005040 Pisum sativum HOM05D005756 ORTHO05D007991 6.2e-122 441.8 441 53.3
CDE06G1141 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 2.4e-121 439.9 421 51.8
ECA236G0821 Erigeron canadensis HOM05D005756 ORTHO05D007991 4.0e-121 439.1 433 52.7
Cc00_g15460 Coffea canephora HOM05D005756 ORTHO05D007991 9.0e-121 438.0 381 56.2
Migut.J01345 Erythranthe guttata HOM05D005756 ORTHO05D007991 1.5e-120 437.2 443 53.0
Medtr5g097060 Medicago truncatula HOM05D005756 ORTHO05D007991 1.0e-119 434.5 434 54.6
Oeu027646.1 Olea europaea HOM05D005756 ORTHO05D007991 1.3e-119 434.1 379 57.0
DCAR_019686 Daucus carota HOM05D005756 ORTHO05D001984 1.4e-118 430.6 372 58.3
PGSC0003DMG400018834 Solanum tuberosum HOM05D005756 ORTHO05D007991 4.2e-118 429.1 378 56.3
Solyc07g045550.3 Solanum lycopersicum HOM05D005756 ORTHO05D007991 5.1e-116 422.2 378 54.2
Glyma.02G304600 Glycine max HOM05D005756 ORTHO05D007991 1.5e-115 420.6 432 52.1
Lj1C795T0 Lonicera japonica HOM05D005756 ORTHO05D007991 1.5e-115 420.6 378 55.0
Eucgr.A01028 Eucalyptus grandis HOM05D005756 ORTHO05D007991 1.3e-114 417.5 381 55.6
CARHR216780 Cardamine hirsuta HOM05D005756 ORTHO05D007991 8.2e-114 414.8 350 59.4
Lalb_Chr10g0107581 Lupinus albus HOM05D005756 ORTHO05D007991 1.2e-112 411.0 433 49.9
LjContig00081g0010185 Lotus japonicus HOM05D005756 ORTHO05D007991 2.6e-112 409.8 436 51.6
AUR62015018 Chenopodium quinoa HOM05D005756 ORTHO05D007991 1.3e-111 407.5 449 49.9
unitig_0.g2684 Utricularia gibba HOM05D005756 ORTHO05D007991 2.2e-111 406.8 507 44.6
arahy.Tifrunner.gnm1.ann1.5EZV1I Arachis hypogaea HOM05D005756 ORTHO05D007991 3.2e-110 402.9 430 49.1
Ah.01g013810 Amaranthus hybridus HOM05D005756 ORTHO05D007991 1.6e-109 400.6 427 50.6
arahy.Tifrunner.gnm1.ann1.P22I4F Arachis hypogaea HOM05D005756 ORTHO05D007991 1.6e-109 400.6 430 49.1
Sopen05g025200 Solanum pennellii HOM05D005756 ORTHO05D000001 1.6e-109 400.6 427 52.0
Phvul.008G284100 Phaseolus vulgaris HOM05D005756 ORTHO05D007991 4.6e-109 399.1 430 50.5
Cpa.g.sc211.22 Carica papaya HOM05D005756 ORTHO05D007991 2.5e-107 393.3 324 58.6
Atru.chr6.3377 Acer truncatum HOM05D005756 ORTHO05D007991 1.7e-106 390.6 346 60.4
HanXRQChr04g0126551 Helianthus annuus HOM05D005756 ORTHO05D007991 4.1e-105 386.0 377 51.2
CANSAT64G2382 Cannabis sativa HOM05D005756 ORTHO05D007991 2.5e-102 376.7 294 61.2
VMungo0647G0888 Vigna mungo HOM05D005756 ORTHO05D007991 2.5e-102 376.7 444 48.0
Ca_06445_v3 Cicer arietinum L. HOM05D005756 ORTHO05D007991 1.4e-100 370.9 392 50.5
Oeu032118.1 Olea europaea HOM05D005756 ORTHO05D007991 1.1e-99 367.9 443 46.7
EL10Ac9g22689 Beta vulgaris HOM05D005756 ORTHO05D007991 7.4e-99 365.2 403 48.6
HPP92_014030 Vanilla planifolia HOM05D005756 ORTHO05D007991 1.7e-95 354.0 438 47.0
SGA_v2.0_scaffold265G46105 Striga asiatica HOM05D005756 ORTHO05D007991 6.5e-95 352.1 434 48.2
HPP92_028362 Vanilla planifolia HOM05D005756 ORTHO05D007991 6.5e-95 352.1 438 47.0
ATR0624G001 Amborella trichopoda HOM05D005756 ORTHO05D007991 4.7e-93 345.9 414 45.7
SEGI_14875 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 2.0e-91 340.5 454 41.9
TWI18G0016 Tripterygium wilfordii HOM05D005756 ORTHO05D007991 5.7e-91 339.0 418 42.3
SGA_v2.0_scaffold12G05997 Striga asiatica HOM05D005756 ORTHO05D007991 1.7e-90 337.4 388 48.5
Gohir.D11G156320 Gossypium hirsutum HOM05D005756 ORTHO05D007991 3.7e-90 336.3 448 44.9
SEGI_35519 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-89 334.0 434 42.4
SEGI_03134 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 4.1e-89 332.8 430 40.2
unitig_748.g7200 Utricularia gibba HOM05D005756 ORTHO05D007991 1.2e-88 331.3 421 47.0
Glyma.14G009200 Glycine max HOM05D005756 ORTHO05D007991 1.6e-85 320.9 348 51.1
CDE04G3001 Ceratophyllum demersum HOM05D005756 ORTHO05D007991 1.0e-79 301.6 427 39.6
SEGI_34368 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 5.0e-71 272.7 387 39.8
AUR62029095 Chenopodium quinoa HOM05D005756 ORTHO05D007991 3.3e-70 270.0 271 53.1
SMO364G0494 Selaginella moellendorffii HOM05D005756 ORTHO05D007991 4.5e-64 249.6 431 35.7
Dinv21286 Davidia involucrata HOM05D005756 ORTHO05D007991 1.6e-48 198.0 280 42.5
MBI19_g37437_MAGBIO Magnolia biondii HOM05D005756 ORTHO05D007991 4.4e-27 126.7 130 51.5
SGA_v2.0_scaffold12G05995 Striga asiatica HOM05D002374 ORTHO05D406151 1.1e-22 112.1 146 43.2
Cpa.g.sc211.21 Carica papaya HOM05D005756 ORTHO05D018916 1.8e-15 88.2 55 80.0
SEGI_18115 Sequoiadendron giganteum HOM05D005756 ORTHO05D007991 1.8e-15 88.2 86 50.0
Hma1.2p1_0545F.1_g176010 Hydrangea macrophylla HOM05D005756 ORTHO05D018916 9.6e-14 82.4 51 78.4
Lj1C795T1 Lonicera japonica HOM05D005756 ORTHO05D018916 3.7e-13 80.5 52 76.9
Dinv21288 Davidia involucrata HOM05D005756 ORTHO05D018916 2.2e-10 71.2 67 55.2
DCAR_019685 Daucus carota HOM05D005756 ORTHO05D018916 1.1e-09 68.9 53 67.9
Oeu027645.1 Olea europaea HOM05D005756 ORTHO05D018916 1.1e-09 68.9 52 71.2
Sc21g0000680 Simmondsia chinensis HOM05D005756 ORTHO05D018916 4.3e-06 57.0 39 71.8
Solyc07g045560.1 Solanum lycopersicum HOM05D005756 ORTHO05D018916 9.6e-06 55.8 39 66.7


User provided reference genes

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