Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 4.6e-214 747.7 388 100.0
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 5.0e-168 594.7 341 90.3
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 2.7e-137 492.7 337 78.0
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 7.5e-116 421.4 242 89.3
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 1.3e-112 410.6 342 60.8
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 1.4e-109 400.6 342 59.9
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 4.0e-109 399.1 328 62.5
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 1.2e-108 397.5 341 61.6
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 7.6e-108 394.8 342 59.1
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 2.9e-107 392.9 342 61.7
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 1.0e-104 384.4 331 60.4
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 3.9e-104 382.5 342 60.5
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 5.1e-104 382.1 351 57.8
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 1.5e-103 380.6 343 59.5
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 4.3e-103 379.0 342 57.0
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 6.2e-102 375.2 336 59.2
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 1.1e-101 374.4 342 56.7
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.0e-100 370.2 341 58.1
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 2.0e-100 370.2 341 58.1
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 2.6e-100 369.8 336 59.2
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 2.2e-99 366.7 335 59.1
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 8.4e-99 364.8 314 58.6
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 1.1e-98 364.4 342 58.5
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 1.9e-98 363.6 341 57.2
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 3.2e-98 362.8 326 56.1
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 4.2e-98 362.5 326 55.8
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 6.0e-97 358.6 309 57.9
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 1.7e-96 357.1 332 57.5
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 3.0e-96 356.3 342 54.7
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 8.7e-96 354.8 337 54.9
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 5.6e-95 352.1 336 54.8
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 5.6e-95 352.1 337 53.4
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 1.6e-94 350.5 315 57.5
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 1.4e-93 347.4 317 54.3
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.4e-93 347.4 315 55.2
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 1.8e-93 347.1 336 56.5
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 3.1e-93 346.3 327 54.7
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 9.0e-93 344.7 315 54.9
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.5e-92 344.0 342 55.3
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.5e-92 344.0 342 56.7
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 2.6e-92 343.2 342 55.3
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 5.8e-92 342.0 342 55.3
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 5.8e-92 342.0 315 54.3
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 7.6e-92 341.7 342 55.3
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 2.9e-91 339.7 324 57.1
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 4.9e-91 339.0 337 53.7
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 6.4e-91 338.6 325 52.6
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.4e-90 337.4 331 53.8
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 2.4e-90 336.7 331 56.5
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 1.2e-89 334.3 320 53.1
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 4.6e-89 332.4 337 53.7
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 6.0e-89 332.0 331 50.2
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 7.9e-89 331.6 332 53.0
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 1.3e-88 330.9 348 53.2
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 1.8e-88 330.5 305 56.7
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 1.8e-88 330.5 329 52.9
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 6.7e-88 328.6 344 53.8
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 1.5e-87 327.4 337 53.4
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 3.3e-87 326.2 317 52.7
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 1.3e-86 324.3 315 53.7
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 3.1e-85 319.7 317 51.7
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 2.6e-84 316.6 330 52.4
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 1.1e-82 311.2 341 50.7
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.5e-82 310.1 333 50.8
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 4.2e-82 309.3 334 50.9
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 4.2e-82 309.3 338 52.1
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 1.6e-81 307.4 342 48.8
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 3.9e-80 302.8 318 50.9
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 5.7e-79 298.9 329 50.5
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 3.1e-77 293.1 316 50.9
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 6.9e-77 292.0 326 49.1
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 6.9e-77 292.0 316 50.6
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 9.0e-77 291.6 316 50.6
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 1.5e-76 290.8 316 50.6
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 1.3e-75 287.7 316 50.3
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 1.3e-75 287.7 315 49.8
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 1.3e-75 287.7 296 50.0
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 3.8e-75 286.2 314 49.0
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 3.8e-75 286.2 321 48.0
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 4.9e-75 285.8 308 49.7
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 4.9e-75 285.8 327 49.2
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 1.1e-74 284.6 315 49.2
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 2.5e-74 283.5 310 50.3
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.2e-74 283.1 333 49.2
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 6.1e-73 278.9 326 48.5
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 6.1e-73 278.9 330 48.2
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 6.1e-73 278.9 326 48.5
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 3.0e-72 276.6 326 48.5
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 6.7e-72 275.4 326 48.2
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 4.8e-70 269.2 343 45.8
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 6.7e-64 248.8 325 45.5
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 1.3e-59 234.6 230 53.5
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 3.6e-57 226.5 227 52.9
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 4.1e-53 213.0 159 66.0
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 2.1e-49 200.7 155 64.5
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 2.8e-46 190.3 186 63.4
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.4e-45 187.2 185 53.5
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 2.3e-32 144.1 171 49.7
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 3.5e-28 130.2 111 57.7
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 5.9e-28 129.4 134 50.0
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 2.3e-24 117.5 185 38.9
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 2.6e-23 114.0 181 39.8
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 9.8e-23 112.1 96 59.4
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 2.0e-15 87.8 139 40.3
MELO3C027487.2 Cucumis melo HOM05D007320 ORTHO05D009290 1.3e-11 75.1 49 81.6
Migut.O00943 Erythranthe guttata HOM05D006895 ORTHO05D008605 1.1e-08 65.5 170 32.4
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 3.4e-07 60.5 69 46.4
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 2.2e-06 57.8 201 27.9
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 2.9e-06 57.4 192 24.5
Aa31LG9G6870 Aethionema arabicum HOM05D002986 ORTHO05D007611 6.4e-06 56.2 108 34.3


User provided reference genes

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