Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G007800 Citrullus lanatus HOM05D004851 ORTHO05D006091 2.3e-54 215.3 107 100.0
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 9.5e-53 209.9 107 97.2
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 1.6e-52 209.1 107 95.3
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 8.1e-52 206.8 107 96.3
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 6.8e-51 203.8 107 89.7
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 6.8e-51 203.8 106 89.6
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 1.2e-50 203.0 107 90.7
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 1.2e-50 203.0 106 91.5
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 2.6e-50 201.8 107 89.7
Haze_00352 Corylus avellana HOM05D004851 ORTHO05D006091 2.6e-50 201.8 107 89.7
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 3.4e-50 201.4 107 89.7
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 4.4e-50 201.1 107 87.9
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 4.4e-50 201.1 106 89.6
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 5.8e-50 200.7 107 89.7
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 7.5e-50 200.3 107 88.8
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 7.5e-50 200.3 106 88.7
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 1.3e-49 199.5 107 88.8
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 1.3e-49 199.5 107 89.7
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 1.7e-49 199.1 107 88.8
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 2.2e-49 198.7 107 89.7
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 2.9e-49 198.4 107 88.8
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 2.9e-49 198.4 107 89.7
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 3.7e-49 198.0 107 88.8
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 4.9e-49 197.6 107 86.9
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 6.4e-49 197.2 107 88.8
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 6.4e-49 197.2 107 88.8
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 8.3e-49 196.8 107 88.8
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 8.3e-49 196.8 107 88.8
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 1.1e-48 196.4 107 86.0
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 1.9e-48 195.7 107 84.1
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 2.4e-48 195.3 107 86.0
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 3.2e-48 194.9 107 86.9
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 3.2e-48 194.9 105 86.7
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 3.2e-48 194.9 105 86.7
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 3.2e-48 194.9 105 86.7
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 3.2e-48 194.9 107 86.9
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 3.2e-48 194.9 107 86.9
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 3.2e-48 194.9 107 86.9
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 4.1e-48 194.5 107 86.0
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 4.1e-48 194.5 107 87.9
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 4.1e-48 194.5 106 86.8
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 4.1e-48 194.5 107 87.9
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 4.1e-48 194.5 107 85.0
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 5.4e-48 194.1 107 85.0
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 5.4e-48 194.1 107 85.0
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 5.4e-48 194.1 105 86.7
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 5.4e-48 194.1 107 84.1
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 7.1e-48 193.7 107 86.9
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 7.1e-48 193.7 107 85.0
SalBow1G3109 Salvia bowleyana HOM05D004851 ORTHO05D006091 7.1e-48 193.7 107 85.0
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 7.1e-48 193.7 107 85.0
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 9.2e-48 193.4 105 85.7
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 9.2e-48 193.4 106 85.8
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 1.2e-47 193.0 107 86.0
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 1.2e-47 193.0 107 85.0
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 1.2e-47 193.0 107 86.0
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 1.6e-47 192.6 107 85.0
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 1.6e-47 192.6 107 86.0
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 2.1e-47 192.2 104 85.6
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 2.1e-47 192.2 107 85.0
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 2.1e-47 192.2 107 86.0
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 2.1e-47 192.2 107 86.9
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 2.1e-47 192.2 107 86.0
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 2.1e-47 192.2 107 84.1
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 2.7e-47 191.8 106 85.8
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 2.7e-47 191.8 106 85.8
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 3.5e-47 191.4 107 83.2
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 3.5e-47 191.4 107 85.0
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 4.6e-47 191.0 107 85.0
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 6.0e-47 190.7 107 86.0
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 7.8e-47 190.3 107 82.2
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 7.8e-47 190.3 107 82.2
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 7.8e-47 190.3 107 82.2
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 7.8e-47 190.3 107 82.2
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 7.8e-47 190.3 107 84.1
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 1.3e-46 189.5 107 82.2
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 1.3e-46 189.5 107 81.3
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 1.7e-46 189.1 107 81.3
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 1.7e-46 189.1 107 81.3
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 1.7e-46 189.1 107 81.3
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 1.7e-46 189.1 107 81.3
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 1.7e-46 189.1 107 81.3
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 1.7e-46 189.1 107 81.3
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 2.3e-46 188.7 107 85.0
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 3.0e-46 188.3 107 83.2
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 3.9e-46 188.0 107 80.4
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 5.1e-46 187.6 105 81.9
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 5.1e-46 187.6 107 83.2
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 6.6e-46 187.2 106 83.0
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 1.5e-45 186.0 106 81.1
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 1.5e-45 186.0 107 83.2
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 1.9e-45 185.7 133 72.2
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 4.3e-45 184.5 107 82.2
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 5.6e-45 184.1 107 81.3
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 9.5e-45 183.3 107 80.4
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 1.2e-44 183.0 107 80.4
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 1.1e-43 179.9 107 80.4
Oeu036566.1 Olea europaea HOM05D004851 ORTHO05D006091 1.1e-43 179.9 101 84.2
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 2.4e-43 178.7 96 86.5
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 3.1e-43 178.3 107 80.4
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 3.1e-43 178.3 107 80.4
EL10Ac5g10580 Beta vulgaris HOM05D004851 ORTHO05D006091 6.8e-43 177.2 107 80.4
SalBow1G4067 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.0e-42 175.6 107 78.5
MD14G1141700 Malus domestica HOM05D004851 ORTHO05D006091 3.4e-42 174.9 102 81.4
Os02g0102400 Oryza sativa ssp. japonica HOM05D004851 ORTHO05D006091 2.4e-40 168.7 108 73.1
HPP92_005346 Vanilla planifolia HOM05D004851 ORTHO05D006091 2.4e-40 168.7 108 74.1
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 7.1e-40 167.2 106 72.6
SEGI_25717 Sequoiadendron giganteum HOM05D004851 ORTHO05D006091 1.9e-37 159.1 106 70.8
SalBow1G6742 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.3e-37 157.9 107 72.9
SalBow1G7753 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.3e-37 157.9 107 72.9
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 9.0e-35 150.2 86 79.1
MD07G1311200 Malus domestica HOM05D004851 ORTHO05D006091 2.3e-30 135.6 115 60.0
Hund19699 Selenicereus undatus HOM05D004851 ORTHO05D006091 5.1e-30 134.4 76 84.2
Mapoly0098s0036 Marchantia polymorpha HOM05D004851 ORTHO05D006091 2.8e-28 128.6 106 56.6
Pp3c8_16260 Physcomitrium patens HOM05D004851 ORTHO05D006091 6.4e-25 117.5 98 59.2
CBR_g50476 Chara braunii HOM05D004851 ORTHO05D006091 1.2e-23 113.2 103 52.4
HanXRQChr17g0540681 Helianthus annuus HOM05D004851 ORTHO05D006091 1.0e-22 110.2 64 82.8
AagrBONN_evm.TU.Sc2ySwM_228.993 Anthoceros agrestis HOM05D004851 ORTHO05D006091 1.8e-22 109.4 103 54.4
Zm00001eb229290 Zea mays HOM05D004851 ORTHO05D006091 1.3e-20 103.2 67 71.6
Ah.02g111010 Amaranthus hybridus HOM05D004851 ORTHO05D006091 3.7e-20 101.7 107 53.3
MCO11G545 Micromonas commoda HOM05D004851 ORTHO05D006091 1.0e-14 83.6 100 40.0
RcHm_v2.0_Chr3g0482791 Rosa chinensis HOM05D004851 ORTHO05D006091 1.3e-14 83.2 39 92.3
SMO361G0506 Selaginella moellendorffii HOM05D004851 ORTHO05D006091 6.7e-14 80.9 90 44.4
SalBow1G4565 Salvia bowleyana HOM05D004851 ORTHO05D006091 2.0e-10 69.3 33 90.9
RcHm_v2.0_Chr3g0482781 Rosa chinensis HOM05D004851 ORTHO05D006091 1.7e-09 66.2 41 73.2
PRCOL_00000384 Prasinoderma coloniale HOM05D005621 ORTHO05D007248 2.9e-09 65.5 90 36.7
PRCOL_00002029 Prasinoderma coloniale HOM05D004851 ORTHO05D006091 7.1e-08 60.8 91 29.7
Pp3c11_10680 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.1e-07 59.3 79 40.5
Pp3c1_5050 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.1e-07 59.3 79 40.5
Pp3c7_18380 Physcomitrium patens HOM05D005621 ORTHO05D007248 2.7e-07 58.9 79 40.5
AagrBONN_evm.TU.Sc2ySwM_344.1949 Anthoceros agrestis HOM05D005621 ORTHO05D007248 6.0e-07 57.8 79 38.0
MCO06G207 Micromonas commoda HOM05D005621 ORTHO05D007248 5.1e-06 54.7 72 43.1


User provided reference genes

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