Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G007790 Citrullus lanatus HOM05D004851 ORTHO05D006091 3.2e-204 714.9 378 100.0
MELO3C024747.2 Cucumis melo HOM05D004851 ORTHO05D006091 1.5e-172 609.8 395 82.8
CsaV3_2G035950 Cucumis sativus L. HOM05D004851 ORTHO05D006091 8.0e-171 604.0 395 80.8
Sed0012488 Sechium edule HOM05D004851 ORTHO05D006091 3.0e-162 575.5 398 80.4
CiPaw.06G036900 Carya illinoinensis HOM05D004851 ORTHO05D006091 1.1e-156 557.0 397 74.6
Prupe.2G329900 Prunus persica HOM05D004851 ORTHO05D006091 7.3e-156 554.3 398 73.6
MD06G1015700 Malus domestica HOM05D004851 ORTHO05D006091 1.8e-154 549.7 397 73.3
MD14G1141700 Malus domestica HOM05D004851 ORTHO05D006091 5.2e-154 548.1 396 72.5
Cfa016106 Carpinus fangiana HOM05D004851 ORTHO05D006091 5.8e-153 544.7 397 75.6
Haze_00351 Corylus avellana HOM05D004851 ORTHO05D006091 1.1e-151 540.4 396 75.3
RcHm_v2.0_Chr1g0384661 Rosa chinensis HOM05D004851 ORTHO05D006091 3.1e-146 522.3 394 71.1
TWI60G1536 Tripterygium wilfordii HOM05D004851 ORTHO05D006091 3.6e-139 498.8 402 67.7
Dinv29371 Davidia involucrata HOM05D004851 ORTHO05D006091 1.8e-138 496.5 432 64.6
Ciclev10031158m.g Citrus clementina HOM05D004851 ORTHO05D006091 7.6e-137 491.1 441 63.0
Manes.08G159500 Manihot esculenta HOM05D004851 ORTHO05D006091 1.1e-135 487.3 394 67.0
CSS0035891 Camellia sinensis var. sinensis HOM05D004851 ORTHO05D006091 1.9e-135 486.5 410 65.6
Duzib128G1329 Durio zibethinus HOM05D004851 ORTHO05D006091 2.4e-135 486.1 446 62.6
Duzib106G1281 Durio zibethinus HOM05D004851 ORTHO05D006091 2.7e-134 482.6 443 62.1
Lj3A883T54 Lonicera japonica HOM05D004851 ORTHO05D006091 7.8e-134 481.1 403 66.3
Actinidia08788 Actinidia chinensis HOM05D004851 ORTHO05D006091 3.0e-133 479.2 415 65.1
TAR628G1149 Trochodendron aralioides HOM05D004851 ORTHO05D006091 1.1e-132 477.2 399 66.4
CANSAT01G3202 Cannabis sativa HOM05D004851 ORTHO05D006091 1.9e-132 476.5 398 66.8
Eucgr.A00913 Eucalyptus grandis HOM05D004851 ORTHO05D006091 1.6e-131 473.4 402 65.4
Nitab4.5_0005243g0030 Nicotiana tabacum HOM05D004851 ORTHO05D006091 2.1e-131 473.0 386 63.7
FAN10G2942 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.5e-129 466.8 390 65.6
Sopen11g004490 Solanum pennellii HOM05D004851 ORTHO05D006091 3.4e-129 465.7 392 63.3
PGSC0003DMG402016246 Solanum tuberosum HOM05D004851 ORTHO05D006091 4.4e-129 465.3 392 63.5
Solyc11g008710.2 Solanum lycopersicum HOM05D004851 ORTHO05D006091 2.2e-128 463.0 392 63.0
Hma1.2p1_2196F.1_g316860 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 8.4e-128 461.1 335 72.2
FAN01G0391 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.9e-127 459.9 391 66.0
FvH4_7g34290 Fragaria vesca HOM05D004851 ORTHO05D006091 4.2e-127 458.8 391 65.7
PGR031G1011 Punica granatum HOM05D004851 ORTHO05D006091 5.4e-127 458.4 404 63.9
Rhsim03G0240200 Rhododendron simsii HOM05D004851 ORTHO05D006091 9.3e-127 457.6 412 62.9
FAN03G1643 Fragaria x ananassa HOM05D004851 ORTHO05D006091 1.2e-126 457.2 390 65.4
CAN.G691.8 Capsicum annuum HOM05D004851 ORTHO05D006091 7.8e-126 454.5 408 62.5
Nn4g24557 Nelumbo nucifera HOM05D004851 ORTHO05D006091 1.0e-125 454.1 405 64.9
Lj3g0009966 Lotus japonicus HOM05D004851 ORTHO05D006091 2.3e-125 453.0 353 69.1
Peaxi162Scf00254g00512 Petunia axillaris HOM05D004851 ORTHO05D006091 6.6e-125 451.4 419 59.9
Thecc.05G226800 Theobroma cacao HOM05D004851 ORTHO05D006091 8.7e-125 451.1 402 64.4
GSVIVG01020716001 Vitis vinifera HOM05D004851 ORTHO05D006091 8.7e-125 451.1 299 78.6
LjContig00389g0015553 Lotus japonicus HOM05D004851 ORTHO05D006091 1.1e-124 450.7 348 69.5
Sc17g0001530 Simmondsia chinensis HOM05D004851 ORTHO05D006091 1.1e-124 450.7 385 68.6
Atru.chr11.646 Acer truncatum HOM05D004851 ORTHO05D006091 6.9e-122 441.4 389 65.0
Ca_17637_v3 Cicer arietinum L. HOM05D004851 ORTHO05D006091 2.6e-121 439.5 351 67.5
Lalb_Chr01g0022101 Lupinus albus HOM05D004851 ORTHO05D006091 5.8e-121 438.3 350 67.4
MD07G1311200 Malus domestica HOM05D004851 ORTHO05D006091 2.5e-116 422.9 287 77.0
MBI07_g19429_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 1.3e-115 420.6 404 58.9
Nitab4.5_0001003g0170 Nicotiana tabacum HOM05D004851 ORTHO05D006091 2.8e-115 419.5 386 58.8
MBI10_g03402_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 3.6e-115 419.1 403 59.3
Psat7g046360 Pisum sativum HOM05D004851 ORTHO05D006091 3.6e-115 419.1 357 62.7
arahy.Tifrunner.gnm1.ann1.NF9HU2 Arachis hypogaea HOM05D004851 ORTHO05D006091 6.2e-115 418.3 371 60.6
arahy.Tifrunner.gnm1.ann1.VYGS4N Arachis hypogaea HOM05D004851 ORTHO05D006091 6.2e-115 418.3 371 60.6
Cpa.g.sc34.168 Carica papaya HOM05D004851 ORTHO05D006091 8.1e-115 417.9 303 72.9
Hma1.2p1_3283F.1_g334850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 2.6e-113 412.9 303 71.6
TPR.G37402 Trifolium pratense HOM05D004851 ORTHO05D006091 9.9e-113 411.0 349 63.9
Medtr8g093680 Medicago truncatula HOM05D004851 ORTHO05D006091 4.2e-111 405.6 350 63.7
Potri.013G076200 Populus trichocarpa HOM05D004851 ORTHO05D006091 7.1e-111 404.8 411 57.7
COL.COLO4_12970 Corchorus olitorius HOM05D004851 ORTHO05D006091 1.8e-109 400.2 461 54.0
arahy.Tifrunner.gnm1.ann1.UCI1EL Arachis hypogaea HOM05D004851 ORTHO05D006091 3.9e-109 399.1 393 57.3
Cc09_g04170 Coffea canephora HOM05D004851 ORTHO05D006091 6.7e-109 398.3 297 69.7
Sabra13G0065400 Salix brachista HOM05D004851 ORTHO05D006091 8.7e-109 397.9 408 55.6
Oeu010173.1 Olea europaea HOM05D004851 ORTHO05D006091 9.6e-108 394.4 340 64.7
vmacro07474 Vaccinium macrocarpon HOM05D004851 ORTHO05D006091 9.6e-108 394.4 572 44.6
MSTRG.27417 Avicennia marina HOM05D004851 ORTHO05D006091 3.7e-107 392.5 340 62.6
Gohir.D13G162900 Gossypium hirsutum HOM05D004851 ORTHO05D006091 4.8e-107 392.1 437 55.4
Hma1.2p1_2196F.1_g316850 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 6.2e-107 391.7 275 73.8
Lsat_1_v5_gn_3_23200 Lactuca sativa HOM05D004851 ORTHO05D006091 4.0e-106 389.0 354 59.6
C02p37840 Brassica napus HOM05D004851 ORTHO05D006091 2.6e-105 386.3 408 57.4
BcaC03g16030 Brassica carinata HOM05D004851 ORTHO05D006091 2.2e-104 383.3 408 57.1
BolC2t09800H Brassica oleracea HOM05D004851 ORTHO05D006091 2.2e-104 383.3 408 57.1
Hund19699 Selenicereus undatus HOM05D004851 ORTHO05D006091 4.9e-104 382.1 386 57.0
Thhalv10002490m.g Eutrema salsugineum HOM05D004851 ORTHO05D006091 1.4e-103 380.6 414 55.3
Sp5g19120 Schrenkiella parvula HOM05D004851 ORTHO05D006091 1.4e-103 380.6 410 55.6
Gorai.013G185100 Gossypium raimondii HOM05D004851 ORTHO05D006091 4.2e-103 379.0 438 55.7
VMungo0540G0464 Vigna mungo HOM05D004851 ORTHO05D006091 4.2e-103 379.0 348 59.2
ECA246G2460 Erigeron canadensis HOM05D004851 ORTHO05D006091 5.5e-103 378.6 351 63.0
THA.LOC104823793 Tarenaya hassleriana HOM05D004851 ORTHO05D006091 7.1e-103 378.3 420 54.0
DCAR_008779 Daucus carota HOM05D004851 ORTHO05D006091 3.5e-102 375.9 315 63.5
Gohir.A13G158200 Gossypium hirsutum HOM05D004851 ORTHO05D006091 4.6e-102 375.6 439 53.3
Phvul.009G105500 Phaseolus vulgaris HOM05D004851 ORTHO05D006091 1.0e-101 374.4 346 60.1
CARHR056280 Cardamine hirsuta HOM05D004851 ORTHO05D006091 1.8e-101 373.6 405 54.8
HPP92_005346 Vanilla planifolia HOM05D004851 ORTHO05D006091 3.9e-101 372.5 374 54.8
SGA_v2.0_scaffold75G25015 Striga asiatica HOM05D004851 ORTHO05D006091 8.7e-101 371.3 416 51.2
A02p23990 Brassica napus HOM05D004851 ORTHO05D006091 2.5e-100 369.8 404 56.2
BraA02t07394Z Brassica rapa HOM05D004851 ORTHO05D006091 2.5e-100 369.8 401 56.4
HanXRQChr08g0228141 Helianthus annuus HOM05D004851 ORTHO05D006091 3.3e-100 369.4 345 62.3
ATR0787G085 Amborella trichopoda HOM05D004851 ORTHO05D006091 5.7e-100 368.6 341 62.8
Carub.0002s0996 Capsella rubella HOM05D004851 ORTHO05D006091 2.8e-99 366.3 414 54.3
PSO017G3120 Papaver somniferum HOM05D004851 ORTHO05D006091 2.8e-99 366.3 404 52.5
PSO170G2140 Papaver somniferum HOM05D004851 ORTHO05D006091 6.3e-99 365.2 404 52.5
BcaB05g23595 Brassica carinata HOM05D004851 ORTHO05D006091 1.5e-97 360.5 406 54.9
AT1G64880 Arabidopsis thaliana HOM05D004851 ORTHO05D006091 2.6e-97 359.8 417 54.0
AL2G19340 Arabidopsis lyrata HOM05D004851 ORTHO05D006091 5.9e-97 358.6 416 53.6
Glyma.04G079800 Glycine max HOM05D004851 ORTHO05D006091 3.8e-96 355.9 364 54.9
Os02g0102400 Oryza sativa ssp. japonica HOM05D004851 ORTHO05D006091 1.9e-95 353.6 390 50.8
EL10Ac5g10580 Beta vulgaris HOM05D004851 ORTHO05D006091 1.6e-94 350.5 412 52.9
Zm00001eb229290 Zea mays HOM05D004851 ORTHO05D006091 2.7e-94 349.7 337 56.1
arahy.Tifrunner.gnm1.ann1.BXG275 Arachis hypogaea HOM05D004851 ORTHO05D006091 6.7e-93 345.1 313 60.7
CDE06G0392 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 5.7e-92 342.0 328 59.8
Glyma.06G081400 Glycine max HOM05D004851 ORTHO05D006091 4.1e-90 335.9 355 54.1
AUR62008058 Chenopodium quinoa HOM05D004851 ORTHO05D006091 6.9e-90 335.1 408 50.7
CDE02G1790 Ceratophyllum demersum HOM05D004851 ORTHO05D006091 2.7e-86 323.2 304 57.9
PSO764G0174 Papaver somniferum HOM05D004851 ORTHO05D006091 4.6e-86 322.4 404 49.8
Aqoxy2G03682 Aquilegia oxysepala HOM05D004851 ORTHO05D006091 2.0e-84 317.0 417 49.9
Aa31LG2G2120 Aethionema arabicum HOM05D004851 ORTHO05D006091 9.1e-82 308.1 411 48.2
ECA246G3904 Erigeron canadensis HOM05D004851 ORTHO05D006091 7.2e-79 298.5 341 49.9
SalBow1G5096 Salvia bowleyana HOM05D004851 ORTHO05D006091 4.8e-75 285.8 358 47.8
Actinidia27036 Actinidia chinensis HOM05D004851 ORTHO05D006091 3.5e-73 279.6 337 49.9
AUR62028634 Chenopodium quinoa HOM05D004851 ORTHO05D006091 4.7e-70 269.2 409 44.7
unitig_736.g22500 Utricularia gibba HOM05D004851 ORTHO05D006091 4.0e-61 239.6 324 45.4
PSO339G3159 Papaver somniferum HOM05D004851 ORTHO05D006091 1.8e-58 230.7 291 48.5
SalBow1G4565 Salvia bowleyana HOM05D004851 ORTHO05D006091 3.5e-57 226.5 245 51.4
SEGI_25717 Sequoiadendron giganteum HOM05D004851 ORTHO05D006091 1.8e-45 187.6 239 42.7
Ah.02g111010 Amaranthus hybridus HOM05D004851 ORTHO05D006091 7.8e-41 172.2 396 33.1
Actinidia20814 Actinidia chinensis HOM05D004851 ORTHO05D006091 7.5e-36 155.6 204 51.0
RcHm_v2.0_Chr3g0482801 Rosa chinensis HOM05D004851 ORTHO05D006091 1.1e-34 151.8 175 52.0
SalBow1G8063 Salvia bowleyana HOM05D004851 ORTHO05D006091 1.5e-28 131.3 126 56.3
Hma1.2p1_2196F.1_g316870 Hydrangea macrophylla HOM05D004851 ORTHO05D006091 2.9e-11 73.9 38 86.8
RcHm_v2.0_Chr3g0482791 Rosa chinensis HOM05D004851 ORTHO05D006091 2.9e-11 73.9 38 86.8
SalBow1G8714 Salvia bowleyana HOM05D004851 ORTHO05D006091 3.8e-11 73.6 93 46.2
MBI14_g09475_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D004104 7.1e-10 69.3 37 81.1
MBI09_g39943_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.1e-09 67.8 37 75.7
MBI09_g43839_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.7e-09 67.4 36 77.8
MBI12_g19411_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D011619 1.3e-08 65.1 37 73.0
MBI11_g24763_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 2.3e-08 64.3 38 71.1
MBI10_g06902_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 3.9e-08 63.5 37 75.7
RcHm_v2.0_Chr4g0404671 Rosa chinensis HOM05D004851 ORTHO05D006091 6.6e-08 62.8 53 60.4
MBI12_g31452_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 5.6e-07 59.7 37 70.3
MBI12_g39868_MAGBIO Magnolia biondii HOM05D004851 ORTHO05D006091 1.6e-06 58.2 37 67.6


User provided reference genes

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