Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 0.0e+00 1648.3 877 100.0
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 0.0e+00 1101.7 812 77.0
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 0.0e+00 1097.4 812 76.6
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 1.6e-222 776.9 634 72.1
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 5.5e-106 389.8 822 38.6
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 5.9e-100 369.8 820 37.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 2.2e-99 367.9 820 38.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 2.5e-98 364.4 815 37.5
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 7.5e-95 352.8 822 36.1
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 9.7e-95 352.4 818 38.5
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.7e-95 352.4 818 38.5
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.7e-92 342.8 819 37.4
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-91 342.0 818 37.4
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 7.2e-90 336.3 854 36.5
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.3e-88 331.3 764 36.0
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 3.4e-87 327.4 611 40.1
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 2.3e-80 304.7 760 36.2
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 1.3e-78 298.9 804 34.6
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.2e-78 298.1 805 35.7
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 4.1e-77 293.9 813 34.8
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.7e-75 288.5 847 34.7
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 6.6e-75 286.6 827 34.2
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 3.3e-74 284.3 814 34.9
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 7.3e-74 283.1 807 35.3
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 7.3e-74 283.1 824 34.1
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 9.5e-74 282.7 809 34.2
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 8.0e-73 279.6 825 34.1
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 2.0e-71 275.0 818 32.0
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 1.7e-70 271.9 687 35.4
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 6.4e-70 270.0 750 35.9
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.4e-69 268.9 836 30.4
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.8e-68 263.1 801 33.3
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 7.8e-68 263.1 814 33.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 2.3e-67 261.5 808 33.2
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.5e-66 258.8 665 35.6
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 5.2e-64 250.4 615 35.8
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 5.8e-63 246.9 798 34.0
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 1.3e-62 245.7 811 31.4
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 2.9e-62 244.6 845 31.6
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 3.7e-62 244.2 801 31.3
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 9.2e-61 239.6 611 35.4
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 4.6e-60 237.3 796 33.0
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 6.0e-60 236.9 800 32.9
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.0e-59 236.1 843 30.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.7e-59 235.3 809 33.1
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.3e-59 235.0 687 31.9
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 8.6e-59 233.0 667 34.3
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.2e-57 229.2 798 32.2
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.6e-57 228.8 800 30.6
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.6e-57 227.6 834 33.8
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 6.2e-57 226.9 851 31.0
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.8e-56 225.3 809 30.0
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.0e-55 221.9 638 34.3
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 5.8e-55 220.3 786 30.4
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 9.8e-55 219.5 782 32.4
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 1.7e-54 218.8 812 28.8
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 2.9e-54 218.0 801 29.8
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 3.7e-54 217.6 621 32.5
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 4.9e-54 217.2 636 33.6
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 1.9e-53 215.3 670 33.6
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 9.2e-53 213.0 817 30.0
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.1e-52 211.8 790 31.5
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 2.7e-52 211.5 833 28.6
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 3.5e-52 211.1 596 32.2
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 6.0e-52 210.3 793 30.8
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.9e-51 207.6 643 33.0
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 1.5e-50 205.7 241 49.0
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 2.5e-50 204.9 763 31.1
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 4.3e-50 204.1 837 29.5
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 4.3e-50 204.1 658 31.2
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 7.3e-50 203.4 800 30.5
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 9.5e-50 203.0 819 30.3
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 2.8e-49 201.4 792 30.8
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 8.1e-49 199.9 829 29.8
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.3e-48 198.4 853 29.2
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 4.0e-48 197.6 825 29.2
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 6.8e-48 196.8 822 29.9
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 2.0e-47 195.3 632 33.4
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 7.6e-47 193.4 211 51.7
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 1.7e-46 192.2 717 29.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 3.8e-46 191.0 641 32.3
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 4.9e-46 190.7 642 32.2
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 8.4e-46 189.9 626 32.1
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.4e-45 189.1 820 28.0
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.4e-45 189.1 789 29.0
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 4.1e-45 187.6 605 32.7
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 9.2e-45 186.4 231 48.5
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.1e-44 185.3 817 30.0
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.7e-44 184.9 291 42.6
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 7.8e-44 183.3 592 32.9
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 1.7e-43 182.2 633 31.8
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 3.0e-43 181.4 522 33.5
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.5e-42 179.1 608 32.2
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 2.5e-42 178.3 319 39.8
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 5.6e-42 177.2 624 30.9
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 8.1e-41 173.3 723 30.4
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 7.6e-39 166.8 718 29.7
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.3e-38 166.0 722 31.2
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 1.7e-38 165.6 359 35.1
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 4.2e-37 161.0 720 29.2
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 4.2e-37 161.0 820 27.1
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 7.1e-37 160.2 720 29.2
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 8.7e-35 153.3 824 26.9
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 5.6e-34 150.6 804 28.0
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.1e-33 148.7 735 28.2
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 4.8e-33 147.5 723 28.9
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 5.3e-32 144.1 801 28.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.9e-29 135.6 490 32.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 7.9e-28 130.2 214 41.1
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 1.8e-27 129.0 823 26.4
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.1e-26 126.3 599 28.0
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 4.3e-26 124.4 702 28.5
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 1.6e-25 122.5 86 64.0
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 4.0e-24 117.9 601 29.0
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 4.5e-23 114.4 462 30.1
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-20 106.3 268 36.2
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 1.0e-19 103.2 153 43.8
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 6.2e-17 94.0 127 43.3
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 9.0e-16 90.1 105 47.6
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 1.2e-15 89.7 463 28.1
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.0e-15 89.0 115 55.7
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.1e-13 83.2 455 26.8
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 1.2e-12 79.7 56 62.5
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 1.4e-08 66.2 123 39.0
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 4.1e-08 64.7 71 47.9
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 7.6e-07 60.5 87 44.8
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.9e-06 58.5 154 34.4


User provided reference genes

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