Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G007100 Citrullus lanatus HOM05D007571 ORTHO05D009439 1.1e-50 203.4 137 100.0
CsaV3_7G007730 Cucumis sativus L. HOM05D007571 ORTHO05D009439 1.8e-40 169.5 137 74.5
MELO3C018528.2 Cucumis melo HOM05D007571 ORTHO05D009439 2.4e-40 169.1 138 76.1
Sed0007395 Sechium edule HOM05D007571 ORTHO05D009439 1.1e-37 160.2 142 70.4
CANSAT25G0272 Cannabis sativa HOM05D007571 ORTHO05D009439 1.6e-28 129.8 138 69.6
CANSAT25G2750 Cannabis sativa HOM05D007571 ORTHO05D009439 1.6e-28 129.8 138 69.6
QL11p029955 Quercus lobata HOM05D007571 ORTHO05D009439 1.6e-28 129.8 138 57.2
Atru.chr5.2324 Acer truncatum HOM05D007571 ORTHO05D009439 2.1e-28 129.4 139 59.7
Haze_10272 Corylus avellana HOM05D007571 ORTHO05D009439 2.7e-28 129.0 138 60.9
Eucgr.G01203 Eucalyptus grandis HOM05D007571 ORTHO05D009439 2.3e-27 125.9 138 55.8
Glyma.10G256000 Glycine max HOM05D007571 ORTHO05D009439 3.0e-27 125.6 138 57.2
Ciclev10029547m.g Citrus clementina HOM05D007571 ORTHO05D009439 5.2e-27 124.8 140 55.7
Duzib052G0547 Durio zibethinus HOM05D007571 ORTHO05D009439 3.3e-26 122.1 148 62.2
MD10G1108300 Malus domestica HOM05D007571 ORTHO05D009439 3.3e-26 122.1 138 58.7
Potri.001G292000 Populus trichocarpa HOM05D007571 ORTHO05D009439 3.3e-26 122.1 141 54.6
THA.LOC104825387 Tarenaya hassleriana HOM05D007571 ORTHO05D009439 3.3e-26 122.1 139 55.4
Gohir.A12G018900 Gossypium hirsutum HOM05D007571 ORTHO05D009439 5.7e-26 121.3 149 63.8
Medtr1g106075 Medicago truncatula HOM05D007571 ORTHO05D009439 5.7e-26 121.3 140 57.1
TWI59G0511 Tripterygium wilfordii HOM05D007571 ORTHO05D009439 7.4e-26 120.9 139 53.2
Carub.0001s3916 Capsella rubella HOM05D007571 ORTHO05D009439 9.7e-26 120.6 139 56.1
Prupe.8G147200 Prunus persica HOM05D007571 ORTHO05D009439 9.7e-26 120.6 138 55.1
Gohir.D12G019350 Gossypium hirsutum HOM05D007571 ORTHO05D009439 1.3e-25 120.2 149 56.4
RcHm_v2.0_Chr6g0252541 Rosa chinensis HOM05D007571 ORTHO05D009439 1.3e-25 120.2 138 55.1
TPR.G21146 Trifolium pratense HOM05D007571 ORTHO05D009439 1.3e-25 120.2 140 56.4
Thecc.02G118900 Theobroma cacao HOM05D007571 ORTHO05D009439 1.7e-25 119.8 150 52.7
AT1G49975 Arabidopsis thaliana HOM05D007571 ORTHO05D009439 2.2e-25 119.4 139 56.1
Thhalv10011862m.g Eutrema salsugineum HOM05D007571 ORTHO05D009439 2.8e-25 119.0 139 55.4
FvH4_2g03581 Fragaria vesca HOM05D007571 ORTHO05D009439 3.7e-25 118.6 138 53.6
Sp1g36830 Schrenkiella parvula HOM05D007571 ORTHO05D009439 3.7e-25 118.6 139 55.4
FAN20G2923 Fragaria x ananassa HOM05D007571 ORTHO05D009439 4.8e-25 118.2 138 52.9
AL1G57530 Arabidopsis lyrata HOM05D007571 ORTHO05D009439 6.3e-25 117.9 139 55.4
Lalb_Chr21g0308001 Lupinus albus HOM05D007571 ORTHO05D009439 3.1e-24 115.5 138 55.8
arahy.Tifrunner.gnm1.ann1.A1M8SQ Arachis hypogaea HOM05D007571 ORTHO05D009439 4.1e-24 115.2 132 51.5
BcaB07g33447 Brassica carinata HOM05D007571 ORTHO05D009439 1.2e-23 113.6 139 57.6
PGR042G0328 Punica granatum HOM05D007571 ORTHO05D009439 1.2e-23 113.6 149 56.4
arahy.Tifrunner.gnm1.ann1.I40GDJ Arachis hypogaea HOM05D007571 ORTHO05D009439 1.6e-23 113.2 132 50.8
Lj5g0013426 Lotus japonicus HOM05D007571 ORTHO05D009439 1.6e-23 113.2 129 55.0
A06p03470 Brassica napus HOM05D007571 ORTHO05D009439 2.6e-23 112.5 139 57.6
C06p04720 Brassica napus HOM05D007571 ORTHO05D009439 2.6e-23 112.5 139 57.6
BraA06t23555Z Brassica rapa HOM05D007571 ORTHO05D009439 2.6e-23 112.5 139 57.6
BcaC08g43171 Brassica carinata HOM05D007571 ORTHO05D009439 4.5e-23 111.7 139 53.2
Phvul.007G046800 Phaseolus vulgaris HOM05D007571 ORTHO05D009439 4.5e-23 111.7 129 51.9
Medtr3g008630 Medicago truncatula HOM05D007571 ORTHO05D009439 5.9e-23 111.3 140 53.6
VMungo0720G0585 Vigna mungo HOM05D007571 ORTHO05D009439 1.3e-22 110.2 132 52.3
COL.COLO4_32496 Corchorus olitorius HOM05D007571 ORTHO05D009439 2.9e-22 109.0 141 51.1
GSVIVG01037807001 Vitis vinifera HOM05D007571 ORTHO05D009439 2.9e-22 109.0 129 54.3
CSS0048413 Camellia sinensis var. sinensis HOM05D007571 ORTHO05D009439 5.5e-21 104.8 132 56.8
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.6e-20 102.1 138 63.0
Actinidia04391 Actinidia chinensis HOM05D007571 ORTHO05D009439 8.0e-20 100.9 85 65.9
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-19 100.1 140 62.1
TAR628G1270 Trochodendron aralioides HOM05D007571 ORTHO05D009439 3.0e-19 99.0 130 50.0
Actinidia27996 Actinidia chinensis HOM05D007571 ORTHO05D009439 4.0e-19 98.6 128 50.0
vmacro19538 Vaccinium macrocarpon HOM05D007571 ORTHO05D009439 5.2e-19 98.2 86 65.1
Cc02_g09420 Coffea canephora HOM05D007571 ORTHO05D009439 6.8e-19 97.8 86 67.4
BolC6t35600H Brassica oleracea HOM05D007571 ORTHO05D009439 8.8e-19 97.4 168 43.5
ECA238G3778 Erigeron canadensis HOM05D007571 ORTHO05D009439 2.0e-18 96.3 85 62.4
Sabra16G0182000 Salix brachista HOM05D007571 ORTHO05D009439 2.0e-18 96.3 181 39.8
Nn6g34507 Nelumbo nucifera HOM05D007571 ORTHO05D009439 2.6e-18 95.9 85 63.5
HanXRQChr02g0053531 Helianthus annuus HOM05D007571 ORTHO05D009439 4.4e-18 95.1 85 61.2
Dinv15820 Davidia involucrata HOM05D007571 ORTHO05D009439 7.5e-18 94.4 68 75.0
MBI16_g39621_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 7.5e-18 94.4 85 63.5
MBI16_g43666_MAGBIO Magnolia biondii HOM05D007571 ORTHO05D009439 7.5e-18 94.4 85 63.5
PSO675G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 7.5e-18 94.4 85 58.8
Rhsim05G0092500 Rhododendron simsii HOM05D007571 ORTHO05D009439 1.3e-17 93.6 87 62.1
EL10Ac9g22184 Beta vulgaris HOM05D007571 ORTHO05D009439 1.7e-17 93.2 89 62.9
Lsat_1_v5_gn_2_105800 Lactuca sativa HOM05D007571 ORTHO05D009439 1.7e-17 93.2 85 62.4
Oeu024805.1 Olea europaea HOM05D007571 ORTHO05D009439 2.2e-17 92.8 85 61.2
MSTRG.417 Avicennia marina HOM05D007571 ORTHO05D009439 3.7e-17 92.0 85 62.4
Sc05g0005590 Simmondsia chinensis HOM05D007571 ORTHO05D009439 3.7e-17 92.0 87 60.9
Ah.01g007010 Amaranthus hybridus HOM05D007571 ORTHO05D009439 4.8e-17 91.7 89 59.6
Migut.F01585 Erythranthe guttata HOM05D007571 ORTHO05D009439 6.3e-17 91.3 69 65.2
Aqoxy6G02559 Aquilegia oxysepala HOM05D007571 ORTHO05D009439 8.3e-17 90.9 78 65.4
CiPaw.05G019300 Carya illinoinensis HOM05D000470 ORTHO05D000348 8.3e-17 90.9 59 79.7
DCAR_028375 Daucus carota HOM05D007571 ORTHO05D009439 1.1e-16 90.5 128 46.9
PSO541G4064 Papaver somniferum HOM05D007571 ORTHO05D009439 1.8e-16 89.7 84 59.5
SalBow6G2573 Salvia bowleyana HOM05D007571 ORTHO05D009439 2.4e-16 89.4 70 70.0
Sopen05g033610 Solanum pennellii HOM05D007571 ORTHO05D009439 2.4e-16 89.4 69 68.1
Os03g0731100 Oryza sativa ssp. japonica HOM05D007571 ORTHO05D009439 3.1e-16 89.0 86 60.5
Hund06510 Selenicereus undatus HOM05D007571 ORTHO05D009439 3.1e-16 89.0 137 43.8
Solyc05g150152.1 Solanum lycopersicum HOM05D007571 ORTHO05D009439 3.1e-16 89.0 85 60.0
AUR62030860 Chenopodium quinoa HOM05D007571 ORTHO05D009439 4.1e-16 88.6 74 64.9
CARHR040010 Cardamine hirsuta HOM05D007571 ORTHO05D009439 5.3e-16 88.2 66 72.7
Peaxi162Scf00519g00423 Petunia axillaris HOM05D007571 ORTHO05D009439 5.3e-16 88.2 85 58.8
CAN.G1433.5 Capsicum annuum HOM05D007571 ORTHO05D009439 7.0e-16 87.8 87 58.6
SEGI_38446 Sequoiadendron giganteum HOM05D007571 ORTHO05D009439 1.2e-15 87.0 85 56.5
SGA_v2.0_scaffold62G21311 Striga asiatica HOM05D007002 ORTHO05D008602 1.2e-15 87.0 59 71.2
Nitab4.5_0017347g0020 Nicotiana tabacum HOM05D007571 ORTHO05D009439 2.7e-15 85.9 81 61.7
Nitab4.5_0000687g0180 Nicotiana tabacum HOM05D007571 ORTHO05D009439 3.5e-15 85.5 86 59.3
AagrBONN_evm.TU.Sc2ySwM_228.3762 Anthoceros agrestis HOM05D007571 ORTHO05D009439 5.9e-15 84.7 92 56.5
ATR0739G046 Amborella trichopoda HOM05D007571 ORTHO05D009439 7.7e-15 84.3 59 76.3
PGSC0003DMG400023397 Solanum tuberosum HOM05D007571 ORTHO05D009439 1.0e-14 84.0 67 62.7
CDE04G1832 Ceratophyllum demersum HOM05D007571 ORTHO05D009439 3.8e-14 82.0 83 54.2
Zm00001eb056210 Zea mays HOM05D007571 ORTHO05D009439 4.7e-12 75.1 86 53.5
Pp3c17_8360 Physcomitrium patens HOM05D007571 ORTHO05D009439 6.8e-11 71.2 90 48.9
CBR_g6736 Chara braunii HOM05D007571 ORTHO05D009439 9.8e-10 67.4 57 54.4
SalBow6G2452 Salvia bowleyana HOM05D007571 ORTHO05D009439 2.4e-08 62.8 68 55.9
Manes.07G054000 Manihot esculenta HOM05D007571 ORTHO05D009439 3.1e-08 62.4 94 52.1
Cre02.g086100 Chlamydomonas reinhardtii HOM05D007571 ORTHO05D009439 1.0e-06 57.4 87 42.5


User provided reference genes

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