Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 1.8e-212 742.3 360 100.0
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 9.9e-203 709.9 360 95.6
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 4.9e-202 707.6 360 94.4
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 9.6e-190 666.8 361 89.5
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 5.1e-159 564.7 356 77.0
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 5.7e-158 561.2 360 78.3
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 2.8e-157 558.9 356 76.4
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 1.3e-154 550.1 362 72.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-153 547.0 353 73.9
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.9e-153 546.2 353 74.2
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 4.2e-153 545.0 353 74.5
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 4.2e-153 545.0 364 73.6
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.2e-152 543.5 371 72.2
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.6e-152 543.1 357 74.5
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.0e-151 540.4 357 74.2
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 3.0e-151 538.9 354 74.9
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 3.9e-151 538.5 362 72.4
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 5.1e-151 538.1 353 74.2
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 6.7e-151 537.7 356 72.2
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.5e-150 535.8 357 73.7
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 9.7e-150 533.9 352 73.3
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.7e-149 533.1 363 71.3
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.7e-149 533.1 363 71.3
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 2.2e-149 532.7 353 72.8
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.8e-149 532.3 352 73.6
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.8e-149 531.6 372 71.2
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.4e-148 530.0 356 73.9
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.8e-148 529.6 374 70.6
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 3.1e-148 528.9 353 72.8
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.1e-148 528.9 352 73.3
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 2.0e-147 526.2 354 72.3
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 2.6e-147 525.8 354 72.3
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 4.5e-147 525.0 354 72.3
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 7.7e-147 524.2 356 71.6
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 3.8e-146 521.9 355 71.3
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 6.5e-146 521.2 366 73.0
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.9e-145 519.6 355 69.9
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.5e-145 519.2 354 70.9
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.2e-145 518.8 354 70.6
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 4.2e-145 518.5 354 70.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 7.2e-145 517.7 362 71.3
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 3.6e-144 515.4 357 71.7
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.6e-144 515.4 353 70.5
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.0e-143 513.8 352 70.7
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.4e-143 513.5 354 70.3
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 1.8e-143 513.1 354 69.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.3e-143 512.7 375 67.5
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 3.0e-143 512.3 363 69.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 5.1e-143 511.5 354 70.1
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 6.7e-143 511.1 355 70.7
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.0e-142 509.6 354 71.5
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 2.6e-142 509.2 362 68.2
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.6e-142 509.2 379 67.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.3e-142 508.8 354 70.9
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 7.4e-142 507.7 354 71.2
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.3e-141 506.9 363 68.9
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.3e-141 506.9 362 68.5
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.8e-141 505.8 364 67.6
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.8e-141 505.0 354 69.2
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 6.3e-141 504.6 341 71.6
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 8.2e-141 504.2 356 69.4
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 7.0e-140 501.1 354 68.4
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 1.2e-139 500.4 361 69.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.5e-139 500.0 354 70.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-139 499.2 352 68.5
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.6e-139 499.2 347 71.5
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 4.5e-139 498.4 362 68.8
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.0e-138 497.3 358 66.8
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 1.5e-137 493.4 363 67.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.5e-137 493.4 354 68.1
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.5e-137 492.7 354 70.6
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 4.2e-137 491.9 354 68.6
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 4.2e-137 491.9 369 69.4
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 9.4e-137 490.7 354 70.1
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.2e-136 490.3 364 66.5
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.6e-136 490.0 354 68.1
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-136 490.0 358 66.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 6.1e-136 488.0 354 68.4
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 8.0e-136 487.6 375 65.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.4e-135 486.9 362 66.0
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 6.7e-135 484.6 354 67.5
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.1e-134 483.8 354 68.9
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 1.5e-134 483.4 362 66.0
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 4.4e-134 481.9 354 66.9
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 4.4e-134 481.9 354 68.6
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 7.4e-134 481.1 358 65.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 7.4e-134 481.1 362 65.5
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 9.7e-134 480.7 331 70.7
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.8e-133 479.2 354 67.8
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.8e-133 478.4 357 69.5
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 6.3e-133 478.0 354 68.9
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.1e-132 477.2 354 68.9
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.1e-132 477.2 347 66.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.5e-131 472.2 346 68.8
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 7.7e-131 471.1 346 68.5
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 1.3e-130 470.3 354 67.8
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 1.3e-130 470.3 354 67.8
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.8e-130 468.8 358 66.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 6.5e-130 468.0 346 67.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 3.2e-129 465.7 376 62.0
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 7.2e-129 464.5 375 62.1
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 6.8e-127 458.0 367 63.8
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 8.8e-127 457.6 330 68.2
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.5e-126 456.8 354 66.1
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 1.5e-126 456.8 354 64.7
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 2.0e-126 456.4 361 64.8
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 3.4e-126 455.7 372 62.4
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 5.7e-126 454.9 354 63.8
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.3e-125 453.8 353 65.7
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 3.7e-125 452.2 354 65.8
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 3.1e-124 449.1 363 62.0
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 4.1e-124 448.7 347 66.9
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 4.1e-124 448.7 354 63.6
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 1.0e-122 444.1 365 62.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 3.2e-121 439.1 354 64.1
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 7.2e-121 438.0 318 68.9
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.6e-120 436.8 354 64.1
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.1e-120 434.9 381 60.9
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 6.1e-120 434.9 348 63.8
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.2e-118 430.6 345 64.1
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.0e-118 429.9 334 66.8
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 5.4e-116 421.8 428 52.6
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 7.0e-116 421.4 356 60.4
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.5e-115 419.1 367 60.8
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 7.7e-115 417.9 533 45.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.5e-113 413.7 439 51.7
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 2.1e-112 409.8 334 63.2
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.3e-109 400.6 421 51.5
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.4e-108 397.1 335 60.0
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.5e-105 386.3 380 55.8
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.9e-103 377.9 367 55.3
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.6e-102 376.3 327 60.6
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.4e-92 343.2 348 53.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.4e-92 343.2 351 52.7
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.8e-87 327.0 230 68.7
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 4.1e-84 315.8 391 47.1
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 2.5e-81 306.6 368 45.7
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 8.7e-74 281.6 310 51.3
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.4e-71 274.2 166 75.9
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 3.1e-71 273.1 247 57.5
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 3.1e-71 273.1 247 57.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 2.2e-69 266.9 228 66.7
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.9e-68 263.8 380 41.6
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.2e-67 261.2 238 54.2
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.6e-67 260.8 224 64.7
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.7e-67 260.0 365 44.1
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.0e-66 258.1 344 42.2
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 1.3e-64 251.1 389 40.4
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.3e-64 251.1 198 65.7
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.8e-62 242.3 228 60.1
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.7e-53 214.2 135 78.5
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 3.5e-51 206.5 168 62.5
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.3e-42 177.2 128 60.9
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.8e-40 169.5 376 33.8
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.2e-35 154.8 347 34.6
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.1e-35 154.1 100 69.0
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.5e-33 147.9 122 59.8
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-26 123.6 72 72.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 5.5e-20 102.8 78 67.9
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.8e-16 89.7 63 66.7
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.3e-08 65.1 33 78.8


User provided reference genes

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