Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 9.8e-141 503.4 253 100.0
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 3.7e-140 501.5 253 98.8
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 1.4e-139 499.6 253 98.4
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 1.0e-137 493.4 253 96.0
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 1.5e-136 489.6 254 96.9
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 8.9e-126 453.8 254 87.4
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 8.9e-126 453.8 254 87.4
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.2e-125 453.4 253 87.0
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.5e-125 453.0 254 86.6
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 5.8e-125 451.1 253 86.2
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 5.8e-125 451.1 253 87.7
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 7.6e-125 450.7 253 86.2
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 7.6e-125 450.7 253 85.8
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 1.3e-124 449.9 253 86.6
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 1.7e-124 449.5 252 86.5
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.9e-124 448.7 253 86.2
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 2.9e-124 448.7 253 87.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 8.4e-124 447.2 253 87.0
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 8.4e-124 447.2 253 86.2
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 8.4e-124 447.2 253 87.0
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.9e-123 446.0 253 85.8
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 3.2e-123 445.3 255 84.3
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 3.2e-123 445.3 255 84.3
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 3.2e-123 445.3 254 85.8
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 3.2e-123 445.3 253 85.0
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 4.2e-123 444.9 253 84.6
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 4.2e-123 444.9 252 85.3
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 7.1e-123 444.1 253 85.0
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 2.7e-122 442.2 252 84.9
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.7e-122 442.2 253 85.8
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 2.7e-122 442.2 253 85.4
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 2.7e-122 442.2 253 85.0
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 4.6e-122 441.4 252 84.9
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 6.0e-122 441.0 253 85.0
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 7.8e-122 440.7 254 85.0
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 1.0e-121 440.3 254 84.6
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 1.3e-121 439.9 253 85.0
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.7e-121 439.5 253 85.4
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 3.0e-121 438.7 256 84.0
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.0e-121 438.7 255 85.9
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 3.0e-121 438.7 257 84.8
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 8.7e-121 437.2 253 83.8
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.1e-120 436.8 250 84.4
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.1e-120 436.8 250 84.4
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 7.3e-120 434.1 256 83.2
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 3.6e-119 431.8 253 83.4
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 6.2e-119 431.0 253 80.6
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 6.2e-119 431.0 254 82.7
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 6.2e-119 431.0 254 82.7
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.4e-118 429.9 275 78.9
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 1.8e-118 429.5 254 82.3
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 2.4e-118 429.1 258 82.6
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 6.9e-118 427.6 250 83.2
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 6.9e-118 427.6 253 80.6
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 9.0e-118 427.2 253 82.2
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 1.2e-117 426.8 254 82.3
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 2.0e-117 426.0 255 81.2
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 2.0e-117 426.0 256 80.9
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 2.0e-117 426.0 262 81.7
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 2.0e-117 426.0 259 81.5
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 2.6e-117 425.6 258 82.2
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 2.6e-117 425.6 255 83.9
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 3.4e-117 425.2 239 84.5
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 3.4e-117 425.2 257 82.5
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 4.5e-117 424.9 249 82.3
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 9.9e-117 423.7 257 81.7
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 1.3e-116 423.3 249 82.7
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 2.2e-116 422.5 249 81.5
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 4.9e-116 421.4 281 75.8
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 1.1e-115 420.2 256 82.8
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 3.2e-115 418.7 256 82.4
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 3.2e-115 418.7 254 81.5
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 4.2e-115 418.3 254 80.3
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 7.1e-115 417.5 253 80.2
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 9.3e-115 417.2 249 80.3
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.2e-114 416.8 280 74.6
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 4.6e-114 414.8 249 80.3
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 4.3e-112 408.3 231 84.8
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 4.3e-112 408.3 231 84.8
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 2.1e-111 406.0 225 85.3
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 2.8e-111 405.6 250 78.4
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 1.4e-110 403.3 248 79.0
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.4e-110 403.3 250 78.0
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.4e-110 403.3 294 69.7
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 4.0e-110 401.7 226 84.5
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.9e-108 395.6 250 76.4
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 3.8e-108 395.2 254 77.2
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.7e-106 389.0 252 77.8
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 1.9e-104 382.9 253 77.9
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 4.0e-102 375.2 253 75.1
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.0e-101 372.9 254 75.2
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 2.6e-101 372.5 222 81.5
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 2.6e-101 372.5 249 73.9
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.6e-101 372.5 452 48.5
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 1.0e-100 370.5 208 86.1
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 2.2e-100 369.4 249 73.1
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 5.5e-99 364.8 219 82.2
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 1.3e-97 360.1 211 84.4
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 5.1e-97 358.2 249 69.5
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 1.1e-96 357.1 283 68.9
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 5.7e-96 354.8 249 69.5
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 3.7e-95 352.1 257 72.4
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 3.1e-94 349.0 249 68.7
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 4.6e-90 335.1 250 69.6
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.5e-88 330.1 208 76.9
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 5.7e-88 328.2 199 78.4
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 7.4e-88 327.8 249 68.3
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 1.3e-87 327.0 250 65.6
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 4.8e-87 325.1 236 67.4
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 4.8e-87 325.1 194 80.4
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 3.4e-85 318.9 253 66.0
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.0e-84 315.1 241 66.4
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 8.8e-81 304.3 267 61.8
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 7.4e-80 301.2 206 74.3
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 3.4e-77 292.4 249 59.0
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 1.9e-75 286.6 339 52.5
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.6e-74 283.5 253 62.5
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.7e-74 282.7 270 57.0
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 2.0e-72 276.6 210 68.1
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 9.7e-72 274.2 161 82.0
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 3.1e-70 269.2 161 82.0
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 5.9e-69 265.0 207 64.7
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.7e-68 263.5 249 52.2
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 8.0e-66 254.6 286 51.7
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 9.7e-64 247.7 225 52.4
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 1.1e-62 244.2 171 73.7
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 1.6e-61 240.4 228 53.5
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 9.4e-59 231.1 206 59.7
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.0e-57 227.6 145 77.9
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 4.8e-55 218.8 180 63.3
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 2.0e-53 213.4 146 69.9
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 8.0e-50 201.4 115 85.2
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 2.1e-42 176.8 111 73.0
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 5.8e-40 168.7 133 67.7
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 4.1e-38 162.5 91 83.5
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 2.8e-34 149.8 174 50.0
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 4.0e-33 146.0 94 76.6
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 1.1e-30 137.9 253 41.1
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 5.4e-30 135.6 94 71.3
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 7.8e-13 78.6 52 69.2


User provided reference genes

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