Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 4.0e-157 558.1 301 100.0
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 7.6e-140 500.7 301 92.0
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 4.8e-134 481.5 307 87.3
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 4.2e-130 468.4 301 86.0
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 1.7e-123 446.4 302 84.4
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 1.5e-100 370.2 302 72.2
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 2.0e-100 369.8 302 72.2
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.6e-97 360.1 303 70.3
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.8e-96 356.7 310 71.0
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 3.0e-96 355.9 302 71.5
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 3.9e-96 355.5 308 68.2
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 6.7e-96 354.8 302 70.5
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 9.7e-95 350.9 245 78.0
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.7e-94 350.1 309 69.6
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 2.8e-94 349.4 306 69.9
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 3.7e-94 349.0 301 67.8
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 6.3e-94 348.2 307 67.4
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 8.2e-94 347.8 302 67.5
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 8.2e-94 347.8 303 68.0
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.1e-93 347.4 305 66.9
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.8e-93 346.7 304 68.8
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.1e-93 345.9 307 68.1
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.1e-93 345.9 305 66.9
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.1e-93 345.9 304 68.1
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.1e-93 345.9 306 69.0
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 4.1e-93 345.5 304 68.1
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 4.1e-93 345.5 308 67.9
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 5.3e-93 345.1 302 67.2
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 9.1e-93 344.4 308 66.2
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 1.6e-92 343.6 302 68.2
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.0e-92 343.2 307 68.7
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 2.6e-92 342.8 308 67.9
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 2.6e-92 342.8 304 67.4
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.5e-92 342.4 216 84.3
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.5e-92 342.0 307 68.7
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 4.5e-92 342.0 298 68.1
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 5.9e-92 341.7 308 67.5
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 7.7e-92 341.3 307 66.4
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.0e-91 340.9 307 69.1
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.0e-91 340.9 302 67.2
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-91 340.9 301 67.1
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 1.3e-91 340.5 302 67.2
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.7e-91 340.1 301 66.8
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 2.2e-91 339.7 302 66.2
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.9e-91 339.3 304 66.1
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.9e-91 339.3 301 66.8
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.9e-91 339.3 304 66.8
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.9e-91 339.3 305 65.9
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 2.9e-91 339.3 301 66.1
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 3.8e-91 339.0 303 67.7
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.0e-91 338.6 305 66.2
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 5.0e-91 338.6 304 67.4
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 5.0e-91 338.6 304 66.1
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 6.5e-91 338.2 207 86.0
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.1e-90 337.4 299 65.6
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.1e-90 337.4 307 67.4
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.9e-90 336.7 304 65.8
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 1.9e-90 336.7 303 66.0
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 2.5e-90 336.3 205 87.3
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.5e-90 336.3 306 66.3
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 3.2e-90 335.9 303 66.3
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 4.2e-90 335.5 271 70.5
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.2e-89 334.0 304 67.1
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 3.6e-89 332.4 301 66.4
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 4.7e-89 332.0 309 65.4
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 8.0e-89 331.3 302 65.9
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.0e-88 330.9 319 64.9
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.0e-88 329.3 302 64.9
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 4.0e-88 328.9 302 65.6
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 4.0e-88 328.9 302 64.6
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 4.0e-88 328.9 301 65.1
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 4.0e-88 328.9 310 63.9
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 6.7e-88 328.2 301 63.5
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 8.8e-88 327.8 306 65.4
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.2e-87 327.4 301 65.8
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.2e-87 327.4 308 66.6
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 2.6e-87 326.2 256 73.8
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.6e-87 326.2 297 64.3
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 5.7e-87 325.1 303 66.0
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.7e-86 323.6 301 65.1
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.8e-86 322.8 301 63.5
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 3.7e-86 322.4 301 64.1
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.1e-85 320.9 310 64.5
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 1.4e-85 320.5 304 63.8
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.4e-85 320.5 205 83.4
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.4e-85 320.5 301 65.1
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 1.8e-85 320.1 302 64.9
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 2.4e-85 319.7 299 64.5
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 4.1e-85 318.9 301 63.1
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 5.3e-85 318.5 295 65.1
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 2.0e-84 316.6 303 62.7
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 2.7e-84 316.2 289 65.4
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 7.7e-84 314.7 302 62.9
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 7.7e-84 314.7 304 63.2
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.0e-83 314.3 205 82.0
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 1.3e-83 313.9 302 63.2
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 2.2e-83 313.2 302 63.2
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 8.5e-83 311.2 252 70.6
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.1e-82 310.8 302 63.2
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 1.1e-82 310.8 305 63.6
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.9e-82 310.1 306 63.4
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 1.9e-82 310.1 302 62.9
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 2.5e-82 309.7 298 63.1
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 2.5e-82 309.7 298 63.1
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 3.2e-82 309.3 303 62.7
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 3.2e-82 309.3 305 61.6
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 5.5e-82 308.5 311 61.4
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 5.5e-82 308.5 252 69.4
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 7.2e-82 308.1 293 64.5
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 7.2e-82 308.1 195 82.6
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 9.4e-82 307.8 310 60.3
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.2e-81 307.4 307 61.6
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 1.6e-81 307.0 208 78.8
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.1e-81 306.6 195 82.1
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 2.1e-81 306.6 358 55.9
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.1e-81 306.6 302 61.9
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 3.6e-81 305.8 311 61.4
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.4e-80 303.9 371 53.4
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 6.8e-80 301.6 244 72.1
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 3.4e-79 299.3 192 82.8
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 5.7e-79 298.5 291 64.9
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 8.3e-78 294.7 294 62.6
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 1.2e-76 290.8 283 62.9
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 2.3e-75 286.6 193 79.8
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.8e-75 285.8 199 76.9
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 5.0e-75 285.4 213 68.5
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 8.6e-75 284.6 204 73.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 8.6e-75 284.6 287 62.7
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.2e-74 282.3 349 55.0
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.2e-74 281.6 215 71.2
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 9.5e-74 281.2 182 79.1
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 2.8e-73 279.6 303 56.8
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.2e-71 274.2 355 52.4
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 5.7e-71 271.9 212 68.9
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.8e-71 271.2 196 73.0
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.2e-68 264.2 199 68.3
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 4.5e-68 262.3 182 74.2
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.0e-67 261.2 266 59.0
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.3e-67 260.8 185 77.3
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 1.7e-67 260.4 272 59.2
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.3e-67 260.0 276 56.2
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 5.0e-67 258.8 267 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 9.5e-66 254.6 205 65.9
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 1.0e-59 234.6 328 50.6
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 1.3e-54 217.6 181 61.3
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 1.7e-54 217.2 204 60.8
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 8.1e-49 198.4 194 61.3
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 1.8e-48 197.2 196 61.2
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 2.0e-47 193.7 182 60.4
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 5.8e-39 165.6 107 86.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.2e-36 157.9 212 45.8
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 8.1e-33 145.2 89 78.7
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 4.0e-32 142.9 120 65.0
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 2.0e-31 140.6 270 37.4
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 1.1e-29 134.8 223 39.9
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.3e-26 122.9 206 40.8
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.3e-22 111.3 78 79.5
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 2.9e-22 110.2 161 48.4
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 3.8e-22 109.8 77 75.3
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.1e-21 108.2 77 74.0
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 2.1e-20 104.0 87 59.8
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 4.9e-14 82.8 173 37.0
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.3e-11 74.7 59 69.5
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 7.6e-07 58.9 89 46.1


User provided reference genes

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