Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 0.0e+00 1193.3 597 100.0
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 2.1e-303 1045.0 561 93.8
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 3.2e-299 1031.2 561 93.2
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 4.5e-269 931.0 559 84.8
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 6.1e-242 840.9 555 76.2
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 5.9e-237 824.3 553 75.2
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 9.5e-235 817.0 536 75.7
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 2.1e-234 815.8 566 73.1
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 8.0e-234 813.9 556 74.3
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 8.0e-234 813.9 548 74.3
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 1.4e-233 813.1 545 74.9
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 3.7e-231 805.1 545 73.8
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 1.1e-230 803.5 540 74.6
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 1.4e-230 803.1 538 73.4
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 1.4e-230 803.1 549 74.0
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 1.9e-230 802.7 546 74.7
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 4.1e-230 801.6 545 73.6
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 4.1e-230 801.6 545 73.8
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 1.6e-229 799.7 552 72.6
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.6e-229 799.7 560 73.0
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.7e-229 798.9 550 74.5
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 2.3e-228 795.8 546 73.1
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 8.6e-228 793.9 538 74.2
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 1.6e-226 789.6 542 72.0
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 3.6e-226 788.5 553 73.6
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.6e-226 788.5 552 71.9
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 8.1e-226 787.3 556 70.5
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 1.1e-225 786.9 552 70.8
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 1.4e-225 786.6 553 72.0
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 6.8e-225 784.3 551 71.7
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 8.9e-225 783.9 533 72.6
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 2.6e-224 782.3 535 73.1
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 3.4e-224 781.9 549 70.5
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 9.8e-224 780.4 552 70.3
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 2.4e-222 775.8 531 73.6
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 9.2e-222 773.9 517 73.9
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 1.2e-221 773.5 533 73.5
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 4.6e-221 771.5 555 69.2
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 1.0e-220 770.4 543 71.6
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.3e-220 769.2 541 71.5
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 3.9e-220 768.5 513 74.1
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 3.9e-220 768.5 549 71.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 8.6e-220 767.3 544 73.5
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 2.5e-219 765.8 527 72.7
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 2.5e-219 765.8 559 70.1
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 3.3e-219 765.4 533 71.3
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 9.5e-219 763.8 548 68.6
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 1.6e-218 763.1 544 69.3
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 8.9e-217 757.3 544 70.0
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 8.9e-217 757.3 508 73.4
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 1.5e-216 756.5 525 69.9
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 2.6e-216 755.7 518 72.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 7.6e-216 754.2 545 70.6
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 1.3e-215 753.4 509 73.5
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.8e-215 751.9 502 74.9
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 3.8e-215 751.9 512 71.3
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 6.4e-215 751.1 483 76.8
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 5.4e-214 748.0 541 68.2
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 5.4e-214 748.0 514 72.8
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 5.4e-214 748.0 548 69.0
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 1.2e-213 746.9 533 70.4
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 1.2e-213 746.9 479 76.2
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.6e-213 746.5 536 70.1
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 2.7e-213 745.7 543 68.7
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 6.0e-213 744.6 443 79.9
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 6.0e-213 744.6 513 74.5
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 6.0e-213 744.6 543 68.9
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.7e-212 743.0 542 68.6
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 2.3e-212 742.7 506 73.5
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 3.0e-212 742.3 535 70.3
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 3.0e-212 742.3 543 68.7
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 8.6e-212 740.7 517 72.3
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 1.9e-211 739.6 555 68.1
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 4.3e-211 738.4 537 69.1
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 4.3e-211 738.4 530 69.2
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 5.6e-211 738.0 512 72.5
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 7.3e-211 737.6 526 70.0
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 9.6e-211 737.3 525 70.1
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 1.2e-210 736.9 537 68.9
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 2.8e-210 735.7 505 73.5
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 6.2e-210 734.6 559 68.2
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 1.1e-209 733.8 505 72.5
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.8e-209 733.0 512 70.9
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 2.4e-209 732.6 496 73.6
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 4.9e-207 724.9 602 62.3
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 4.9e-207 724.9 463 76.5
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 8.4e-207 724.2 443 77.9
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.4e-206 723.4 563 65.0
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.7e-205 719.2 571 66.7
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 7.8e-205 717.6 489 72.2
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 1.7e-204 716.5 543 67.4
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 5.6e-203 711.4 419 81.1
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.3e-202 710.3 488 70.7
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 3.6e-202 708.8 504 70.2
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 9.9e-200 700.7 498 70.1
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 1.3e-199 700.3 525 67.2
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 3.1e-193 679.1 545 67.0
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 6.7e-180 634.8 371 81.7
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 8.7e-180 634.4 528 60.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.3e-175 620.5 415 73.7
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.4e-164 583.9 414 73.2
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 4.7e-157 558.9 384 72.1
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 8.8e-156 554.7 384 71.6
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.2e-154 550.1 488 56.4
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 4.5e-152 542.3 440 59.3
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 1.1e-145 521.2 435 57.9
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 1.5e-134 484.2 439 54.7
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 8.6e-119 431.8 505 47.1
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 1.0e-111 408.3 508 48.4
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 1.8e-108 397.5 553 43.2
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 7.5e-107 392.1 539 45.8
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 1.1e-105 388.3 503 47.1
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 5.4e-105 386.0 440 50.5
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.2e-104 384.8 483 44.7
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.2e-104 384.8 525 46.7
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.8e-99 365.9 248 73.8
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 6.0e-96 355.9 515 43.9
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 7.8e-96 355.5 548 42.7
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 1.9e-81 307.8 176 83.0
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 1.2e-80 305.1 481 37.8
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 1.8e-71 274.6 169 76.9
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 1.6e-56 224.9 204 61.8
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 4.1e-44 183.7 151 61.6
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 2.3e-39 167.9 138 61.6
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.2e-32 145.6 129 58.1
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 2.2e-29 134.8 86 70.9
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 1.5e-25 122.1 105 60.0
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.8e-23 115.2 125 46.4
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 3.5e-19 100.9 134 50.0
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 1.0e-18 99.4 104 56.7
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 2.8e-16 91.3 58 75.9
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 8.0e-16 89.7 128 43.0
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.5e-14 85.5 138 39.9
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 1.1e-12 79.3 134 43.3
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 3.5e-11 74.3 143 42.7
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 1.5e-06 58.9 37 73.0
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 9.8e-06 56.2 67 49.3


User provided reference genes

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