Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.5e-59 231.5 121 100.0
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 2.8e-32 142.1 108 75.0
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 4.9e-29 131.3 89 84.3
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 1.1e-28 130.2 89 83.1
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 1.8e-28 129.4 87 82.8
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 2.7e-19 99.0 113 54.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 3.5e-19 98.6 91 60.4
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 5.0e-18 94.7 91 59.3
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 6.6e-18 94.4 90 58.9
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 8.6e-18 94.0 94 57.4
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 1.9e-17 92.8 91 59.3
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 2.5e-17 92.4 91 58.2
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.6e-16 89.7 90 57.8
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 2.8e-16 89.0 90 58.9
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 2.8e-16 89.0 92 55.4
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 3.6e-16 88.6 90 61.1
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 8.1e-16 87.4 90 57.8
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 1.1e-15 87.0 89 55.1
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.1e-15 87.0 91 57.1
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 1.4e-15 86.7 93 54.8
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 1.4e-15 86.7 101 51.5
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 1.4e-15 86.7 90 54.4
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 1.4e-15 86.7 95 55.8
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 1.8e-15 86.3 94 53.2
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.8e-15 86.3 102 50.0
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 4.0e-15 85.1 92 55.4
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 6.8e-15 84.3 89 56.2
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 1.5e-14 83.2 92 54.3
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 1.5e-14 83.2 91 56.0
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 2.0e-14 82.8 91 51.6
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 2.0e-14 82.8 90 55.6
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 2.0e-14 82.8 90 54.4
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 2.0e-14 82.8 90 52.2
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 2.6e-14 82.4 102 48.0
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 2.6e-14 82.4 102 48.0
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-14 82.4 90 55.6
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-14 82.4 75 60.0
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-14 82.4 75 60.0
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 2.6e-14 82.4 75 60.0
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.4e-14 82.0 93 52.7
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 3.4e-14 82.0 93 55.9
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.4e-14 82.0 93 55.9
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 3.4e-14 82.0 93 55.9
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 3.4e-14 82.0 93 58.1
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 4.4e-14 81.6 92 55.4
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 5.8e-14 81.3 95 50.5
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 7.5e-14 80.9 93 59.1
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 9.8e-14 80.5 91 53.8
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 9.8e-14 80.5 93 55.9
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 1.7e-13 79.7 114 45.6
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 1.7e-13 79.7 91 56.0
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 1.7e-13 79.7 96 52.1
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 4.9e-13 78.2 90 51.1
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 4.9e-13 78.2 91 56.0
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 4.9e-13 78.2 95 52.6
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 6.4e-13 77.8 85 54.1
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 6.4e-13 77.8 84 56.0
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 8.3e-13 77.4 84 53.6
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 8.3e-13 77.4 89 58.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.1e-12 77.0 93 53.8
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 1.4e-12 76.6 79 57.0
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.4e-12 76.6 93 53.8
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 1.4e-12 76.6 90 52.2
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.4e-12 76.6 87 49.4
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.4e-12 76.6 87 49.4
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 1.9e-12 76.3 82 53.7
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 1.9e-12 76.3 82 53.7
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 1.9e-12 76.3 89 52.8
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.4e-12 75.9 92 50.0
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 3.2e-12 75.5 90 57.8
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 5.4e-12 74.7 87 49.4
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 5.4e-12 74.7 87 49.4
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 9.2e-12 73.9 92 51.1
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 9.2e-12 73.9 93 53.8
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.2e-11 73.6 93 53.8
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.6e-11 73.2 82 53.7
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 2.7e-11 72.4 98 48.0
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 3.5e-11 72.0 86 48.8
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 3.5e-11 72.0 93 48.4
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 6.0e-11 71.2 92 46.7
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 6.0e-11 71.2 93 46.2
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 6.0e-11 71.2 100 46.0
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 7.8e-11 70.9 93 50.5
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 7.8e-11 70.9 83 50.6
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 1.0e-10 70.5 84 51.2
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.0e-10 70.5 104 44.2
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 1.3e-10 70.1 83 54.2
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 1.3e-10 70.1 85 51.8
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 1.3e-10 70.1 74 54.1
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 3.0e-10 68.9 86 51.2
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 6.6e-10 67.8 53 66.0
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 6.6e-10 67.8 56 60.7
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 6.6e-10 67.8 92 48.9
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 1.5e-09 66.6 93 44.1
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 2.5e-09 65.9 101 42.6
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 5.6e-09 64.7 85 47.1
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 9.5e-09 63.9 81 48.1
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 1.2e-08 63.5 81 49.4
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 1.6e-08 63.2 78 50.0
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 2.8e-08 62.4 81 50.6
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 4.7e-08 61.6 71 50.7
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 4.7e-08 61.6 90 51.1
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 6.2e-08 61.2 81 48.1
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 8.1e-08 60.8 91 45.1
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 8.1e-08 60.8 76 51.3
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.4e-07 60.1 85 49.4
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 4.0e-07 58.5 45 66.7
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 6.8e-07 57.8 93 45.2
Ciclev10010763m.g Citrus clementina HOM05D007491 ORTHO05D009489 2.0e-06 56.2 55 45.5
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 4.4e-06 55.1 29 79.3
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 4.4e-06 55.1 58 44.8
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 5.8e-06 54.7 76 53.9
CARHR111160 Cardamine hirsuta HOM05D002091 ORTHO05D002140 9.9e-06 53.9 90 40.0
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 9.9e-06 53.9 37 64.9


User provided reference genes

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