Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 7.8e-111 404.1 210 100.0
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.1e-96 357.1 210 89.5
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 1.5e-93 346.7 207 88.9
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 1.2e-79 300.4 198 82.8
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.7e-60 236.9 224 61.2
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.7e-60 235.7 200 65.0
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 9.1e-59 231.1 215 59.5
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.6e-58 230.3 228 61.8
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 2.0e-58 229.9 213 63.4
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.6e-58 229.6 214 60.7
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 3.5e-58 229.2 214 63.6
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 4.5e-58 228.8 245 57.6
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 4.5e-58 228.8 213 61.0
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 5.9e-58 228.4 213 59.6
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 5.9e-58 228.4 216 62.5
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 1.7e-57 226.9 215 60.9
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 3.8e-57 225.7 216 63.0
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 6.5e-57 224.9 213 61.5
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.5e-56 223.8 217 59.4
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.5e-56 223.0 214 63.1
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.2e-56 222.6 215 61.4
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 5.5e-56 221.9 215 61.9
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 5.5e-56 221.9 216 61.6
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 7.2e-56 221.5 215 60.9
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 7.2e-56 221.5 215 61.9
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 7.2e-56 221.5 215 61.4
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.7e-55 219.5 224 61.2
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 3.6e-55 219.2 224 59.4
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 3.6e-55 219.2 217 59.0
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 1.0e-54 217.6 216 60.6
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 1.4e-54 217.2 213 59.6
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.8e-54 216.9 214 60.7
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.3e-54 216.5 200 61.5
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 3.0e-54 216.1 202 60.9
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 5.2e-54 215.3 202 63.4
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 5.2e-54 215.3 219 59.4
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 6.7e-54 214.9 216 60.2
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 6.7e-54 214.9 215 60.0
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 5.7e-53 211.8 219 57.5
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 9.7e-53 211.1 209 58.9
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 1.3e-52 210.7 228 54.4
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.3e-52 210.7 216 57.9
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 2.2e-52 209.9 221 57.5
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 2.2e-52 209.9 206 59.2
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 2.2e-52 209.9 224 56.7
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 8.2e-52 208.0 206 62.1
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 9.1e-51 204.5 208 60.1
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 9.1e-51 204.5 220 58.2
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.2e-50 204.1 221 56.1
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 1.2e-50 204.1 218 55.5
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 1.6e-50 203.8 218 56.0
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 3.5e-50 202.6 203 58.6
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 4.5e-50 202.2 217 55.3
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 5.9e-50 201.8 216 55.6
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 7.7e-50 201.4 218 55.5
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 2.2e-49 199.9 214 56.5
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 2.9e-49 199.5 218 56.4
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 8.5e-49 198.0 219 56.2
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 8.5e-49 198.0 261 48.3
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 1.1e-48 197.6 224 57.6
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 1.5e-48 197.2 204 59.8
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 1.5e-48 197.2 205 58.5
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 1.9e-48 196.8 215 54.4
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 1.9e-48 196.8 210 56.7
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 2.5e-48 196.4 217 55.8
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 7.2e-48 194.9 206 56.8
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 9.4e-48 194.5 202 56.9
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 9.4e-48 194.5 246 51.6
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 1.6e-47 193.7 204 55.9
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 2.1e-47 193.4 250 49.6
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 4.7e-47 192.2 209 56.5
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 6.1e-47 191.8 252 50.8
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 1.8e-46 190.3 249 48.6
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 2.3e-46 189.9 170 61.8
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.0e-46 189.5 255 49.8
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 5.2e-46 188.7 249 49.4
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 8.8e-46 188.0 249 49.4
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 1.5e-45 187.2 260 51.2
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.5e-45 187.2 207 56.5
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 1.3e-44 184.1 178 59.0
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.3e-44 184.1 197 54.8
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 1.1e-43 181.0 226 51.3
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 1.1e-43 181.0 277 45.8
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.1e-43 181.0 177 60.5
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 1.4e-43 180.6 209 54.1
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 9.1e-43 177.9 254 47.2
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 3.5e-42 176.0 150 65.3
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 4.5e-42 175.6 210 54.3
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 1.0e-41 174.5 199 54.8
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 3.8e-41 172.6 215 54.0
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-41 172.6 212 50.9
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 1.9e-40 170.2 152 66.4
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 1.9e-40 170.2 241 46.9
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 3.3e-40 169.5 218 50.0
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 9.5e-40 167.9 202 52.5
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.2e-39 167.5 208 50.0
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 2.8e-39 166.4 216 50.9
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 6.1e-39 165.2 216 49.1
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 8.0e-39 164.9 198 50.5
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.4e-38 164.1 220 50.9
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.4e-38 164.1 220 50.9
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.4e-38 164.1 217 48.8
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.3e-38 163.3 226 48.7
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 2.3e-38 163.3 149 61.1
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-37 161.0 212 50.9
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-37 159.8 221 50.7
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 4.4e-37 159.1 198 52.5
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 6.3e-36 155.2 202 50.5
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 6.3e-36 155.2 192 54.2
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.3e-36 155.2 202 49.0
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 1.1e-35 154.5 219 47.9
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 2.0e-34 150.2 258 43.0
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 2.3e-33 146.7 269 40.5
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 3.8e-33 146.0 222 46.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.5e-32 144.1 217 48.8
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 5.6e-32 142.1 244 41.4
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 1.2e-31 141.0 224 45.5
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.8e-31 139.8 154 55.2
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 3.6e-31 139.4 224 44.6
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.4e-30 137.5 151 57.0
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.8e-30 137.1 163 47.2
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.7e-28 130.6 190 46.8
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.7e-28 130.6 230 41.7
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 5.4e-27 125.6 196 47.4
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 5.4e-27 125.6 196 47.4
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 7.0e-27 125.2 206 41.3
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.7e-26 123.2 198 43.4
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 2.7e-26 123.2 198 43.4
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 2.3e-25 120.2 217 38.7
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 8.6e-25 118.2 153 49.0
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 8.6e-25 118.2 113 61.1
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 9.5e-24 114.8 208 43.3
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 9.5e-24 114.8 158 48.7
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 2.8e-23 113.2 180 46.1
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 6.2e-23 112.1 86 69.8
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-22 111.3 165 49.1
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 8.9e-22 108.2 152 44.1
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.5e-21 107.5 175 44.0
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-21 107.5 161 47.8
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 2.6e-21 106.7 73 74.0
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 5.8e-21 105.5 143 49.0
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 3.2e-19 99.8 162 45.1
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-18 97.1 63 77.8
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-18 97.1 63 77.8
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-18 97.1 63 77.8
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-18 97.1 63 77.8
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 2.1e-18 97.1 161 44.7
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-17 94.4 56 85.7
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 1.3e-17 94.4 58 81.0
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 3.9e-17 92.8 56 83.9
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 3.9e-17 92.8 56 83.9
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 8.6e-17 91.7 86 61.6
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 9.5e-16 88.2 139 47.5
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 9.5e-16 88.2 136 50.0
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 3.6e-15 86.3 178 41.6
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 4.7e-15 85.9 185 40.5
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.8e-14 84.0 51 78.4
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 4.0e-14 82.8 54 77.8
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 5.2e-14 82.4 185 40.0
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 8.9e-14 81.6 104 45.2
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 4.4e-13 79.3 51 76.5
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 5.8e-13 79.0 129 40.3
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 3.7e-12 76.3 46 82.6
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 3.7e-12 76.3 46 82.6
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 1.0e-09 68.2 88 48.9
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 1.9e-08 63.9 119 40.3
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 2.8e-07 60.1 38 76.3
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.4e-06 57.8 62 53.2
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 1.4e-06 57.8 50 62.0
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 3.1e-06 56.6 76 48.7
A09p57370 Brassica napus HOM05D003513 ORTHO05D004660 4.0e-06 56.2 35 80.0
CBR_g21766 Chara braunii HOM05D003513 ORTHO05D004660 4.0e-06 56.2 124 33.1
MCO09G316 Micromonas commoda HOM05D003513 ORTHO05D004660 8.9e-06 55.1 169 29.0


User provided reference genes

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