Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.2e-111 406.8 250 100.0
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 2.1e-90 336.3 226 92.0
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 2.5e-88 329.3 226 78.3
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 5.6e-88 328.2 226 88.5
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 6.9e-86 321.2 226 90.3
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 1.1e-80 303.9 229 82.1
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 6.2e-79 298.1 229 81.7
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 1.1e-78 297.4 226 80.1
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 1.5e-77 293.5 230 79.1
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 2.6e-77 292.7 226 80.1
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 3.4e-77 292.4 229 74.2
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 4.5e-77 292.0 230 78.7
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 5.8e-77 291.6 229 73.4
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 7.6e-77 291.2 229 75.1
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 1.9e-75 286.6 229 78.2
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 3.2e-75 285.8 226 73.9
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.6e-74 283.5 228 83.3
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 2.1e-74 283.1 229 75.5
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 2.7e-74 282.7 226 82.7
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 3.5e-74 282.3 229 79.9
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 7.9e-74 281.2 229 77.7
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 1.0e-73 280.8 226 72.1
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.3e-73 280.4 226 71.7
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 2.3e-73 279.6 225 79.6
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 5.1e-73 278.5 226 81.0
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 8.7e-73 277.7 229 76.0
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 8.7e-73 277.7 229 76.0
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 1.9e-72 276.6 229 69.9
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.9e-72 276.6 229 71.6
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 7.4e-72 274.6 229 76.9
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 7.4e-72 274.6 226 80.5
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-70 270.0 229 77.7
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.1e-70 269.2 229 69.4
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 9.0e-70 267.7 229 79.5
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 9.0e-70 267.7 229 78.2
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 3.4e-69 265.8 228 67.5
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 3.4e-69 265.8 229 72.1
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.5e-69 265.4 225 76.9
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 7.6e-69 264.6 229 71.6
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 9.9e-69 264.2 229 73.4
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 2.2e-68 263.1 230 72.6
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 4.9e-68 261.9 229 78.6
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 1.4e-67 260.4 245 71.4
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 2.4e-67 259.6 225 71.1
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.1e-66 256.5 248 70.2
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 6.0e-66 255.0 229 67.7
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 1.0e-65 254.2 226 68.6
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 1.8e-65 253.4 222 77.0
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.8e-65 253.4 222 74.8
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 3.0e-65 252.7 230 67.8
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 3.9e-65 252.3 229 75.1
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.9e-65 252.3 225 74.2
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 1.1e-64 250.8 229 76.0
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 1.5e-64 250.4 228 70.6
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 3.3e-64 249.2 229 72.1
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 4.3e-64 248.8 226 69.5
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.6e-64 248.4 226 75.2
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 5.6e-64 248.4 226 73.9
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 7.4e-64 248.1 229 76.0
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 9.6e-64 247.7 229 72.5
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 1.6e-63 246.9 225 72.9
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.1e-63 246.5 226 74.8
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 1.4e-62 243.8 230 74.3
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 1.4e-62 243.8 226 65.9
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 3.1e-62 242.7 259 68.3
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 5.3e-62 241.9 226 71.7
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 1.2e-61 240.7 229 64.6
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 2.0e-61 240.0 229 71.6
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.6e-61 239.6 227 76.2
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 3.4e-61 239.2 230 72.2
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 3.4e-61 239.2 226 68.1
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 1.3e-60 237.3 229 71.6
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 2.2e-60 236.5 229 73.4
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 3.8e-60 235.7 227 67.4
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.1e-59 234.2 229 63.8
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 2.1e-58 229.9 229 72.5
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 2.7e-58 229.6 234 59.8
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 6.0e-58 228.4 225 72.4
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 2.3e-57 226.5 230 71.7
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 3.9e-57 225.7 226 71.7
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 3.9e-57 225.7 226 68.1
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 8.7e-57 224.6 226 67.3
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 1.5e-56 223.8 226 69.0
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.5e-56 223.8 229 63.3
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 2.5e-56 223.0 229 69.0
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.5e-56 223.0 223 56.5
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 2.1e-55 219.9 226 57.5
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 8.2e-55 218.0 225 71.6
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 1.8e-54 216.9 225 71.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.8e-54 216.9 225 71.6
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 2.4e-54 216.5 225 72.0
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 6.9e-54 214.9 229 52.0
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 1.2e-53 214.2 338 51.8
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 2.0e-53 213.4 226 61.9
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.7e-52 210.3 226 58.0
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 1.7e-52 210.3 236 62.3
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.9e-52 209.5 154 72.1
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.8e-52 209.1 227 56.4
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.9e-51 206.8 228 62.3
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 2.5e-51 206.5 229 69.4
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.2e-51 206.1 228 62.3
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.6e-50 202.6 228 56.6
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.8e-49 200.3 228 54.4
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 3.0e-49 199.5 226 64.6
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 3.0e-49 199.5 226 64.6
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 3.3e-48 196.1 230 53.9
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 5.7e-48 195.3 226 63.7
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 5.7e-48 195.3 226 64.6
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 1.3e-47 194.1 226 64.2
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 8.2e-47 191.4 229 61.1
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.4e-46 190.7 229 56.3
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 9.1e-46 188.0 238 63.4
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 2.2e-44 183.3 211 65.9
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 5.0e-44 182.2 226 53.5
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 8.5e-44 181.4 226 54.9
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.0e-41 174.5 188 64.4
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.6e-37 159.8 95 78.9
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.8e-30 137.1 226 46.5
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 4.5e-29 132.5 228 42.5
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 1.9e-27 127.1 76 80.3
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 2.5e-27 126.7 65 89.2
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.2e-27 125.9 228 40.8
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 4.0e-25 119.4 95 63.2
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 3.3e-24 116.3 68 80.9
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 2.0e-21 107.1 229 34.9
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 1.7e-20 104.0 222 32.4
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 2.9e-20 103.2 231 42.0
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 6.5e-12 75.5 159 37.1
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 2.8e-10 70.1 40 80.0
PSO541G1702 Papaver somniferum HOM05D006255 ORTHO05D008014 7.5e-08 62.0 169 37.3
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 2.2e-07 60.5 78 43.6
CDE09G1089 Ceratophyllum demersum HOM05D003023 ORTHO05D003412 7.0e-06 55.5 77 59.7


User provided reference genes

Program Settings