Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003480 Citrullus lanatus HOM05D007101 ORTHO05D008632 3.0e-229 799.3 875 100.0
MELO3C013256.2 Cucumis melo HOM05D007101 ORTHO05D008632 2.2e-200 703.4 875 90.2
CsaV3_7G001820 Cucumis sativus L. HOM05D007101 ORTHO05D008632 1.2e-196 691.0 875 89.7
Sed0027220 Sechium edule HOM05D007101 ORTHO05D008632 1.8e-181 640.6 876 84.4
COL.COLO4_17930 Corchorus olitorius HOM05D007101 ORTHO05D008632 3.5e-113 413.7 871 75.7
CiPaw.06G116300 Carya illinoinensis HOM05D007101 ORTHO05D008632 1.8e-112 411.4 869 78.9
Duzib132G1059 Durio zibethinus HOM05D007101 ORTHO05D008632 2.4e-109 401.0 871 76.6
GSVIVG01023885001 Vitis vinifera HOM05D007101 ORTHO05D008632 3.6e-105 387.1 876 76.3
RcHm_v2.0_Chr6g0280761 Rosa chinensis HOM05D007101 ORTHO05D008632 5.3e-101 373.2 873 71.7
CSS0049741 Camellia sinensis var. sinensis HOM05D007101 ORTHO05D008632 1.2e-100 372.1 877 74.7
QL11p055950 Quercus lobata HOM05D007101 ORTHO05D008632 7.9e-97 359.4 871 76.6
Cpa.g.sc20.207 Carica papaya HOM05D007101 ORTHO05D008632 1.0e-96 359.0 877 72.9
Potri.004G205600 Populus trichocarpa HOM05D007101 ORTHO05D008632 3.9e-96 357.1 875 76.1
Prupe.8G178500 Prunus persica HOM05D007101 ORTHO05D008632 5.1e-96 356.7 874 76.2
FAN15G1235 Fragaria x ananassa HOM05D007101 ORTHO05D008632 3.3e-95 354.0 869 76.2
Sabra04G0138800 Salix brachista HOM05D007101 ORTHO05D008632 5.7e-95 353.2 879 75.7
FvH4_2g16640 Fragaria vesca HOM05D007101 ORTHO05D008632 2.2e-94 351.3 869 76.2
THA.LOC104819686 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 4.8e-94 350.1 880 74.7
TWI15G0633 Tripterygium wilfordii HOM05D007101 ORTHO05D008632 7.7e-92 342.8 873 71.9
Cfa005353 Carpinus fangiana HOM05D007101 ORTHO05D008632 1.1e-90 339.0 874 69.0
Dinv41876 Davidia involucrata HOM05D007101 ORTHO05D008632 1.5e-90 338.6 880 64.1
Haze_02013 Corylus avellana HOM05D007101 ORTHO05D008632 7.2e-90 336.3 874 75.2
Manes.11G110800 Manihot esculenta HOM05D007101 ORTHO05D008632 9.4e-90 335.9 877 75.0
TAR376G1071 Trochodendron aralioides HOM05D007101 ORTHO05D008632 4.7e-89 333.6 875 71.5
Sc14g0002450 Simmondsia chinensis HOM05D007101 ORTHO05D008632 1.0e-88 332.4 874 71.7
MD10G1139700 Malus domestica HOM05D007101 ORTHO05D008632 1.4e-88 332.0 875 74.6
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 2.3e-88 331.3 885 62.6
Lalb_Chr05g0218081 Lupinus albus HOM05D007101 ORTHO05D008632 1.1e-87 328.9 872 66.5
Actinidia17999 Actinidia chinensis HOM05D007101 ORTHO05D008632 2.8e-86 324.3 878 71.8
Gohir.D04G170700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 2.0e-84 318.2 870 74.0
Gorai.012G159300 Gossypium raimondii HOM05D007101 ORTHO05D008632 2.0e-84 318.2 870 74.0
Lj4g0005302 Lotus japonicus HOM05D007101 ORTHO05D008632 2.0e-84 318.2 881 67.5
Thecc.02G044400 Theobroma cacao HOM05D007101 ORTHO05D008632 5.9e-84 316.6 875 73.8
Rhsim01G0003500 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.0e-83 313.5 879 72.7
Gohir.A04G125700 Gossypium hirsutum HOM05D007101 ORTHO05D008632 3.2e-82 310.8 870 73.7
Glyma.08G060600 Glycine max HOM05D007101 ORTHO05D008632 1.6e-81 308.5 881 65.3
Phvul.002G220400 Phaseolus vulgaris HOM05D007101 ORTHO05D008632 1.0e-80 305.8 889 62.9
Aqoxy6G01656 Aquilegia oxysepala HOM05D007101 ORTHO05D008632 1.8e-80 305.1 877 68.2
PGR142G0716 Punica granatum HOM05D007101 ORTHO05D008632 6.8e-80 303.1 877 69.2
Eucgr.I01520 Eucalyptus grandis HOM05D007101 ORTHO05D008632 3.7e-78 297.4 870 69.7
arahy.Tifrunner.gnm1.ann1.RR3D2P Arachis hypogaea HOM05D007101 ORTHO05D008632 7.0e-77 293.1 875 68.9
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 1.2e-76 292.4 875 65.3
SGA_v2.0_scaffold32G13346 Striga asiatica HOM05D007101 ORTHO05D008632 1.2e-76 292.4 876 71.9
C07p06350 Brassica napus HOM05D007101 ORTHO05D008632 3.5e-76 290.8 878 71.5
Ca_18469_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 8.5e-75 286.2 876 65.0
Ca_30070_v3 Cicer arietinum L. HOM05D007101 ORTHO05D008632 8.5e-75 286.2 876 65.0
Aa31LG8G14540 Aethionema arabicum HOM05D007101 ORTHO05D008632 3.2e-74 284.3 880 71.4
Ah.01g023750 Amaranthus hybridus HOM05D000564 ORTHO05D002780 9.4e-74 282.7 856 68.5
BcaB03g16462 Brassica carinata HOM05D007101 ORTHO05D008632 1.0e-72 279.3 875 71.4
AL3G49990 Arabidopsis lyrata HOM05D007101 ORTHO05D008632 1.8e-72 278.5 874 71.4
Peaxi162Scf00818g00019 Petunia axillaris HOM05D007101 ORTHO05D008632 1.2e-71 275.8 867 72.7
SalBow1G7566 Salvia bowleyana HOM05D007101 ORTHO05D008632 4.4e-71 273.9 864 68.8
EL10Ac9g21242 Beta vulgaris HOM05D007101 ORTHO05D008632 1.3e-70 272.3 865 71.3
BcaC06g36224 Brassica carinata HOM05D007101 ORTHO05D008632 1.7e-70 271.9 878 71.0
Thhalv10022542m.g Eutrema salsugineum HOM05D007101 ORTHO05D008632 1.7e-70 271.9 872 71.2
Ciclev10027787m.g Citrus clementina HOM05D007101 ORTHO05D008632 4.9e-70 270.4 874 70.1
A07p03990 Brassica napus HOM05D007101 ORTHO05D008632 2.4e-69 268.1 878 70.5
BraA07t28190Z Brassica rapa HOM05D007101 ORTHO05D008632 2.4e-69 268.1 878 70.4
AUR62027126 Chenopodium quinoa HOM05D007101 ORTHO05D008632 3.5e-68 264.2 798 75.2
CARHR293460 Cardamine hirsuta HOM05D007101 ORTHO05D008632 2.9e-67 261.2 874 70.6
TPR.G15380 Trifolium pratense HOM05D007101 ORTHO05D008632 2.5e-66 258.1 870 63.6
BolC7t41051H Brassica oleracea HOM05D007101 ORTHO05D008632 7.3e-66 256.5 875 70.7
Migut.B00010 Erythranthe guttata HOM05D007101 ORTHO05D008632 7.3e-66 256.5 877 70.7
AUR62012916 Chenopodium quinoa HOM05D007101 ORTHO05D008632 1.2e-65 255.8 813 72.1
vmacro02332 Vaccinium macrocarpon HOM05D007101 ORTHO05D008632 2.8e-65 254.6 899 67.0
DCAR_015659 Daucus carota HOM05D000046 ORTHO05D008632 1.0e-64 252.7 874 70.4
Nitab4.5_0000526g0060 Nicotiana tabacum HOM05D007101 ORTHO05D008632 2.2e-62 245.0 833 73.6
Nitab4.5_0006710g0010 Nicotiana tabacum HOM05D007101 ORTHO05D008632 1.1e-61 242.7 833 73.5
Hund06163 Selenicereus undatus HOM05D007101 ORTHO05D008632 5.4e-61 240.4 876 68.4
AT2G17140 Arabidopsis thaliana HOM05D007101 ORTHO05D008632 1.6e-60 238.8 874 69.5
Cc03_g11620 Coffea canephora HOM05D007101 ORTHO05D008632 1.6e-60 238.8 441 58.0
Atru.chr5.3546 Acer truncatum HOM05D007101 ORTHO05D008632 1.7e-59 235.3 785 74.5
Oeu059796.1 Olea europaea HOM05D007101 ORTHO05D008632 1.7e-59 235.3 882 70.7
CAN.G157.9 Capsicum annuum HOM05D007101 ORTHO05D008632 1.1e-58 232.6 870 70.7
TAR629G2938 Trochodendron aralioides HOM05D007101 ORTHO05D008632 1.6e-57 228.8 202 59.4
Lj9A406T59 Lonicera japonica HOM05D007101 ORTHO05D008632 4.0e-56 224.2 876 69.9
arahy.Tifrunner.gnm1.ann1.X169V3 Arachis hypogaea HOM05D007101 ORTHO05D008632 3.7e-54 217.6 361 69.3
MSTRG.17820 Avicennia marina HOM05D007101 ORTHO05D008632 8.3e-54 216.5 369 67.2
HanXRQChr12g0374451 Helianthus annuus HOM05D007101 ORTHO05D008632 1.9e-53 215.3 855 66.9
SHI10554 Sapria himalayana HOM05D007101 ORTHO05D008632 3.2e-53 214.5 827 66.9
PGSC0003DMG400019836 Solanum tuberosum HOM05D007101 ORTHO05D008632 1.0e-51 209.5 366 67.8
FAN24G2347 Fragaria x ananassa HOM05D007101 ORTHO05D008632 1.9e-50 205.3 869 69.7
Nn1g05331 Nelumbo nucifera HOM05D007101 ORTHO05D008632 1.2e-49 202.6 882 61.9
Solyc02g021020.4 Solanum lycopersicum HOM05D007101 ORTHO05D008632 5.2e-48 197.2 368 66.6
Carub.0003s3107 Capsella rubella HOM05D007101 ORTHO05D008632 8.9e-48 196.4 880 66.6
Sopen02g005320 Solanum pennellii HOM05D007101 ORTHO05D008632 2.6e-47 194.9 366 66.7
ECA233G4336 Erigeron canadensis HOM05D000046 ORTHO05D014757 9.2e-45 186.4 377 62.3
Medtr4g091600 Medicago truncatula HOM05D007101 ORTHO05D008632 2.0e-39 168.7 874 58.4
Rhsim11G0197400 Rhododendron simsii HOM05D007101 ORTHO05D008632 5.8e-39 167.2 846 55.2
MBI06_g35039_MAGBIO Magnolia biondii HOM05D007101 ORTHO05D008632 1.3e-38 166.0 888 50.3
Lsat_1_v5_gn_8_121281 Lactuca sativa HOM05D007101 ORTHO05D008632 2.9e-38 164.9 860 63.8
Os02g0132100 Oryza sativa ssp. japonica HOM05D007101 ORTHO05D008632 4.1e-37 161.0 366 60.7
PSO675G0367 Papaver somniferum HOM05D007101 ORTHO05D008632 5.4e-37 160.6 883 63.4
Sp3g30480 Schrenkiella parvula HOM05D007101 ORTHO05D008632 3.0e-35 154.8 745 74.9
Zm00001eb209030 Zea mays HOM05D007101 ORTHO05D008632 3.0e-35 154.8 362 61.3
CDE04G2490 Ceratophyllum demersum HOM05D007101 ORTHO05D008632 1.9e-34 152.1 175 45.1
HPP92_025842 Vanilla planifolia HOM05D007101 ORTHO05D008632 4.3e-34 151.0 390 56.4
TAR629G1847 Trochodendron aralioides HOM05D007101 ORTHO05D008632 5.2e-32 144.1 181 45.3
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 4.2e-29 134.4 193 42.5
unitig_32.g11014 Utricularia gibba HOM05D007101 ORTHO05D008632 6.0e-28 130.6 187 41.7
MD05G1134600 Malus domestica HOM05D007101 ORTHO05D008632 6.6e-27 127.1 312 66.3
ATR0618G240 Amborella trichopoda HOM05D007101 ORTHO05D008632 2.8e-25 121.7 396 53.0
MD05G1134700 Malus domestica HOM05D007101 ORTHO05D008632 3.8e-22 111.3 106 53.8
Gorai.008G096400 Gossypium raimondii HOM05D007101 ORTHO05D008632 1.0e-19 103.2 155 39.4
VMungo0251G1721 Vigna mungo HOM05D007101 ORTHO05D008632 1.4e-16 92.8 101 52.5
THA.LOC104807397 Tarenaya hassleriana HOM05D007101 ORTHO05D008632 1.6e-12 79.3 112 44.6
Gohir.D06G112750 Gossypium hirsutum HOM05D007101 ORTHO05D019476 3.4e-07 61.6 62 50.0
ATR0794G139 Amborella trichopoda HOM05D007155 ORTHO05D003034 1.3e-06 59.7 98 30.6
SGA_v2.0_scaffold60G20860 Striga asiatica HOM05D000104 ORTHO05D009920 2.2e-06 58.9 95 36.8
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 4.9e-06 57.8 97 33.0
Medtr3g094280 Medicago truncatula HOM05D006503 ORTHO05D008116 4.9e-06 57.8 90 33.3
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 4.9e-06 57.8 98 31.6
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 6.5e-06 57.4 100 34.0
HPP92_028305 Vanilla planifolia HOM05D004783 ORTHO05D005581 6.5e-06 57.4 97 30.9
FvH4_6g07430 Fragaria vesca HOM05D006888 ORTHO05D008371 8.4e-06 57.0 54 44.4
FAN02G2736 Fragaria x ananassa HOM05D006888 ORTHO05D008371 8.4e-06 57.0 54 44.4
FAN09G2872 Fragaria x ananassa HOM05D006888 ORTHO05D008371 8.4e-06 57.0 54 44.4
FAN14G0975 Fragaria x ananassa HOM05D006888 ORTHO05D008371 8.4e-06 57.0 54 44.4


User provided reference genes

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