Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 6.6e-279 963.4 477 100.0
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 1.8e-236 822.4 447 92.8
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 1.2e-235 819.7 447 92.6
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 1.5e-219 766.1 447 87.0
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.4e-204 715.7 447 79.2
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 4.1e-204 714.9 447 78.7
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 5.3e-204 714.5 448 79.0
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.7e-202 709.5 448 77.2
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 8.5e-202 707.2 444 78.2
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 1.1e-201 706.8 448 77.9
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 5.5e-201 704.5 447 77.6
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 2.1e-200 702.6 445 76.9
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 2.1e-200 702.6 447 78.1
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 2.1e-200 702.6 448 77.0
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 3.6e-200 701.8 443 76.7
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 7.9e-200 700.7 448 77.2
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.9e-199 698.4 442 77.6
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 5.1e-199 698.0 447 76.3
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 8.8e-199 697.2 448 76.1
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 9.7e-198 693.7 480 72.7
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 9.7e-198 693.7 446 76.9
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 8.2e-197 690.6 456 73.7
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 1.1e-196 690.3 442 77.1
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.8e-196 689.5 444 75.2
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 3.1e-196 688.7 447 75.8
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 5.3e-196 688.0 443 75.8
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 6.9e-196 687.6 447 76.3
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 1.2e-195 686.8 447 74.5
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 2.0e-195 686.0 448 75.9
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 5.9e-195 684.5 446 74.4
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 7.7e-195 684.1 448 75.9
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 1.3e-194 683.3 447 75.8
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 2.2e-194 682.6 450 74.2
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.9e-194 682.2 447 74.5
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 5.0e-194 681.4 447 75.6
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 6.5e-194 681.0 447 75.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.5e-194 681.0 448 74.8
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.4e-193 679.9 445 75.1
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 5.5e-193 677.9 447 74.0
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 1.2e-192 676.8 447 74.7
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.6e-192 676.4 453 73.7
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.6e-192 676.4 447 73.8
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 3.6e-192 675.2 448 73.2
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 3.9e-191 671.8 442 75.1
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.5e-190 669.8 449 72.2
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 2.6e-190 669.1 444 74.3
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 8.2e-189 664.1 444 74.3
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 1.4e-188 663.3 439 74.7
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 2.6e-187 659.1 470 69.4
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 4.5e-187 658.3 452 71.5
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 1.0e-186 657.1 447 72.5
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 1.3e-186 656.8 446 72.0
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 5.0e-186 654.8 442 72.2
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 6.5e-186 654.4 446 72.0
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.1e-185 653.7 444 71.4
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 5.5e-185 651.4 446 72.0
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 9.4e-185 650.6 442 71.5
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.2e-184 650.2 448 73.2
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.0e-183 647.1 450 70.4
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.4e-183 646.7 439 73.1
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 2.0e-182 642.9 446 71.3
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 2.6e-182 642.5 407 75.9
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.7e-181 639.8 420 75.0
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 2.8e-181 639.0 467 68.1
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 9.1e-180 634.0 442 69.9
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 8.5e-178 627.5 461 68.1
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 8.5e-178 627.5 447 69.6
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 1.6e-176 623.2 466 68.7
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 6.8e-175 617.8 451 68.5
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 7.7e-171 604.4 426 70.9
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 6.5e-170 601.3 422 70.1
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 5.5e-169 598.2 421 69.4
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 1.4e-167 593.6 448 68.1
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 5.4e-164 581.6 443 66.6
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 4.5e-163 578.6 367 76.6
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.1e-161 573.9 448 65.8
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 7.5e-158 561.2 441 64.4
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.7e-157 560.1 350 76.3
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.2e-155 553.9 393 68.4
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.0e-155 553.1 393 68.4
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 8.6e-154 547.7 659 47.5
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 1.1e-153 547.4 354 75.4
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 6.2e-152 541.6 438 65.1
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 6.2e-152 541.6 389 69.2
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 6.8e-151 538.1 352 73.3
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 1.4e-140 503.8 447 56.4
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 1.8e-135 486.9 399 62.2
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 3.1e-135 486.1 448 58.3
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 5.2e-135 485.3 501 54.5
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 7.6e-134 481.5 339 71.7
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 1.3e-133 480.7 448 57.4
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 4.1e-132 475.7 440 57.0
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 7.1e-132 474.9 297 80.1
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 7.1e-132 474.9 444 56.3
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 1.9e-129 466.8 299 76.9
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 3.6e-128 462.6 296 78.0
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 1.5e-126 457.2 442 55.0
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 6.4e-125 451.8 296 75.3
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 8.4e-125 451.4 468 53.4
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 1.7e-122 443.7 399 60.9
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 3.9e-122 442.6 448 53.8
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.5e-121 439.9 298 71.8
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.6e-120 437.2 443 54.2
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 6.4e-117 425.2 373 58.2
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 6.7e-114 415.2 302 69.2
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.3e-112 411.0 443 52.1
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 4.6e-107 392.5 437 51.7
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 2.8e-104 383.3 443 50.3
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 2.0e-102 377.1 298 62.8
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 1.7e-101 374.0 464 44.0
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.3e-98 364.4 443 46.7
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 3.4e-94 349.7 227 74.4
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.4e-94 349.7 420 47.6
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 5.0e-93 345.9 227 73.1
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 1.1e-76 291.6 358 45.5
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.6e-67 261.2 162 78.4
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-66 258.5 182 69.8
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.0e-66 258.5 182 69.8
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.6e-65 253.8 172 70.9
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 3.1e-63 246.9 179 67.0
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 2.9e-61 240.4 141 78.0
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 2.8e-51 207.2 123 75.6
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 3.6e-51 206.8 119 79.0
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 7.5e-49 199.1 123 74.0
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.9e-48 196.4 123 70.7
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 1.9e-44 184.5 120 69.2
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 2.5e-44 184.1 123 70.7
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 3.5e-38 163.7 169 51.5
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 5.9e-38 162.9 105 77.1
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 2.5e-36 157.5 290 34.1
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 3.1e-34 150.6 105 72.4
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 8.9e-34 149.1 104 74.0
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 1.7e-32 144.8 97 71.1
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.9e-29 133.7 102 65.7
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 2.5e-28 131.0 76 76.3
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 5.2e-18 96.7 69 72.5
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.2e-17 95.5 68 72.1
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 2.6e-17 94.4 63 74.6
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 2.4e-15 87.8 86 53.5
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 9.6e-12 75.9 55 69.1
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 8.1e-11 72.8 48 62.5


User provided reference genes

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