Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003320 Citrullus lanatus HOM05D005114 ORTHO05D006301 1.5e-83 312.8 154 100.0
Sed0004058 Sechium edule HOM05D005114 ORTHO05D006301 1.7e-74 282.7 155 89.7
MELO3C015705.2 Cucumis melo HOM05D005114 ORTHO05D006301 2.3e-68 262.3 163 85.9
CiPaw.05G093800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.9e-55 218.4 146 69.2
TAR628G1615 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.7e-53 211.5 152 63.8
CsaV3_7G002020 Cucumis sativus L. HOM05D005114 ORTHO05D006301 6.1e-53 211.1 148 77.7
Haze_01976 Corylus avellana HOM05D005114 ORTHO05D006301 8.0e-53 210.7 154 65.6
Cfa005386 Carpinus fangiana HOM05D005114 ORTHO05D006301 1.8e-52 209.5 154 66.2
Duzib248G1587 Durio zibethinus HOM05D005114 ORTHO05D006301 2.6e-51 205.7 140 67.9
QL11p056532 Quercus lobata HOM05D005114 ORTHO05D006301 2.6e-51 205.7 156 64.7
TAR376G1108 Trochodendron aralioides HOM05D005114 ORTHO05D006301 7.5e-51 204.1 152 63.8
COL.COLO4_34318 Corchorus olitorius HOM05D005114 ORTHO05D006301 9.8e-51 203.8 139 67.6
Thecc.02G147000 Theobroma cacao HOM05D005114 ORTHO05D006301 1.4e-49 199.9 140 65.7
Gohir.A03G170500 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.5e-48 195.3 144 61.8
Gorai.005G216400 Gossypium raimondii HOM05D005114 ORTHO05D006301 3.5e-48 195.3 144 61.8
Manes.15G113200 Manihot esculenta HOM05D005114 ORTHO05D006301 3.5e-48 195.3 158 62.7
TAR381G0701 Trochodendron aralioides HOM05D005114 ORTHO05D006301 4.6e-48 194.9 152 62.5
Duzib052G0751 Durio zibethinus HOM05D005114 ORTHO05D006301 1.0e-47 193.7 140 64.3
ClCG02G010460 Citrullus lanatus HOM05D005114 ORTHO05D006301 3.0e-47 192.2 143 67.8
Gohir.D02G193600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 6.6e-47 191.0 144 61.1
Sabra04G0139700 Salix brachista HOM05D005114 ORTHO05D006301 8.6e-47 190.7 147 60.5
CsaV3_6G010060 Cucumis sativus L. HOM05D005114 ORTHO05D006301 2.5e-46 189.1 151 64.9
Cpa.g.sc232.10 Carica papaya HOM05D005114 ORTHO05D006301 3.3e-46 188.7 149 63.8
Oeu061898.1 Olea europaea HOM05D005114 ORTHO05D006301 3.3e-46 188.7 137 65.7
MELO3C013487.2 Cucumis melo HOM05D005114 ORTHO05D006301 7.3e-46 187.6 151 64.2
Sed0025941 Sechium edule HOM05D005114 ORTHO05D006301 2.1e-45 186.0 148 62.8
Oeu025012.1 Olea europaea HOM05D005114 ORTHO05D006301 2.8e-45 185.7 137 67.9
Aqoxy6G01552 Aquilegia oxysepala HOM05D005114 ORTHO05D006301 1.8e-44 183.0 151 57.0
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 3.1e-44 182.2 136 65.4
Gohir.D12G013600 Gossypium hirsutum HOM05D005114 ORTHO05D006301 9.8e-43 177.2 144 61.1
RcHm_v2.0_Chr6g0281051 Rosa chinensis HOM05D005114 ORTHO05D006301 8.3e-42 174.1 134 62.7
Sabra09G0131100 Salix brachista HOM05D005114 ORTHO05D006301 8.3e-42 174.1 144 61.8
Gorai.008G013600 Gossypium raimondii HOM05D005114 ORTHO05D006301 1.1e-41 173.7 144 60.4
Potri.004G207500 Populus trichocarpa HOM05D005114 ORTHO05D006301 1.1e-41 173.7 139 62.6
SalBow5G2991 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.2e-41 172.2 140 60.0
SalBow5G4655 Salvia bowleyana HOM05D005114 ORTHO05D006301 3.2e-41 172.2 140 60.0
Potri.009G168800 Populus trichocarpa HOM05D005114 ORTHO05D006301 7.1e-41 171.0 143 61.5
Ciclev10029408m.g Citrus clementina HOM05D005114 ORTHO05D006301 1.2e-40 170.2 153 56.9
Eucgr.I01537 Eucalyptus grandis HOM05D005114 ORTHO05D006301 3.5e-40 168.7 161 57.1
MSTRG.27609 Avicennia marina HOM05D005114 ORTHO05D006301 1.7e-39 166.4 139 61.2
Migut.N01364 Erythranthe guttata HOM05D005114 ORTHO05D006301 3.0e-39 165.6 143 59.4
Atru.chr5.3568 Acer truncatum HOM05D005114 ORTHO05D006301 3.9e-39 165.2 144 55.6
CANSAT25G0809 Cannabis sativa HOM05D005114 ORTHO05D006301 5.1e-39 164.9 140 61.4
MD11G1242200 Malus domestica HOM05D005114 ORTHO05D006301 5.1e-39 164.9 139 59.0
PGR142G2291 Punica granatum HOM05D005114 ORTHO05D006301 8.6e-39 164.1 152 55.9
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 1.5e-38 163.3 128 63.3
CDE06G2378 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 2.5e-38 162.5 150 53.3
FvH4_2g16910 Fragaria vesca HOM05D005114 ORTHO05D006301 2.5e-38 162.5 145 57.2
MD05G1140900 Malus domestica HOM05D005114 ORTHO05D006301 4.3e-38 161.8 138 58.7
FAN24G2001 Fragaria x ananassa HOM05D008916 ORTHO05D029537 5.6e-38 161.4 140 58.6
FAN27G0013 Fragaria x ananassa HOM05D005114 ORTHO05D006301 5.6e-38 161.4 145 57.2
Nitab4.5_0000783g0020 Nicotiana tabacum HOM05D005114 ORTHO05D006301 9.5e-38 160.6 169 51.5
PSO210G3276 Papaver somniferum HOM05D005114 ORTHO05D006301 4.7e-37 158.3 148 56.1
FAN15G0896 Fragaria x ananassa HOM05D005114 ORTHO05D006301 8.1e-37 157.5 145 55.9
Lsat_1_v5_gn_4_127800 Lactuca sativa HOM05D005114 ORTHO05D006301 8.1e-37 157.5 158 52.5
Rhsim05G0044800 Rhododendron simsii HOM05D005114 ORTHO05D006301 8.1e-37 157.5 165 52.7
PSO761G0527 Papaver somniferum HOM05D005114 ORTHO05D006301 2.3e-36 156.0 148 55.4
Duzib132G0223 Durio zibethinus HOM05D005114 ORTHO05D006301 3.4e-35 152.1 110 64.5
Ah.01g009940 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.7e-34 149.8 131 55.0
Eucgr.H04995 Eucalyptus grandis HOM05D005114 ORTHO05D006301 2.2e-34 149.4 151 55.6
EL10Ac9g21545 Beta vulgaris HOM05D005114 ORTHO05D006301 6.4e-34 147.9 141 53.2
CDE07G1352 Ceratophyllum demersum HOM05D005114 ORTHO05D006301 6.4e-34 147.9 151 51.0
Ah.01g017650 Amaranthus hybridus HOM05D005114 ORTHO05D006301 1.1e-33 147.1 129 56.6
Lsat_1_v5_gn_8_120760 Lactuca sativa HOM05D005114 ORTHO05D006301 3.2e-33 145.6 156 50.6
Solyc01g112260.4 Solanum lycopersicum HOM05D005114 ORTHO05D006301 2.1e-32 142.9 166 47.0
Sopen01g054350 Solanum pennellii HOM05D005114 ORTHO05D006301 3.5e-32 142.1 166 47.0
MBI04_g33967_MAGBIO Magnolia biondii HOM05D005114 ORTHO05D006301 7.8e-32 141.0 136 52.9
Nn6g31654 Nelumbo nucifera HOM05D005114 ORTHO05D006301 5.1e-31 138.3 140 54.3
Phvul.008G292700 Phaseolus vulgaris HOM05D005114 ORTHO05D006301 6.6e-31 137.9 145 51.7
Lj5P171T50 Lonicera japonica HOM05D005114 ORTHO05D006301 1.1e-30 137.1 91 62.6
CSS0034975 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 1.9e-30 136.3 151 51.0
Glyma.02G311900 Glycine max HOM05D005114 ORTHO05D006301 2.5e-30 136.0 136 53.7
CiPaw.06G114800 Carya illinoinensis HOM05D005114 ORTHO05D006301 3.3e-30 135.6 95 68.4
Dinv41866 Davidia involucrata HOM05D005114 ORTHO05D006301 3.3e-30 135.6 140 57.9
Os02g0715300 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 9.6e-30 134.0 149 47.7
VMungo0647G0598 Vigna mungo HOM05D005114 ORTHO05D006301 2.1e-29 132.9 138 54.3
TWI31G1388 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.8e-29 132.5 144 52.8
Lsat_1_v5_gn_3_48420 Lactuca sativa HOM05D005114 ORTHO05D006301 8.1e-29 131.0 132 50.8
PGR042G3856 Punica granatum HOM05D005114 ORTHO05D006301 1.1e-28 130.6 138 52.9
SGA_v2.0_scaffold98G29308 Striga asiatica HOM05D005114 ORTHO05D006301 3.1e-28 129.0 143 51.0
HanXRQChr15g0479801 Helianthus annuus HOM05D005114 ORTHO05D006301 8.9e-28 127.5 123 52.8
Os08g0511400 Oryza sativa ssp. japonica HOM05D005114 ORTHO05D006301 8.9e-28 127.5 127 48.8
DCAR_006992 Daucus carota HOM05D005114 ORTHO05D006301 7.6e-27 124.4 120 57.5
Sc08g0002110 Simmondsia chinensis HOM05D005114 ORTHO05D006301 7.6e-27 124.4 137 47.4
Zm00001eb252690 Zea mays HOM05D005114 ORTHO05D006301 9.9e-27 124.0 152 47.4
TWI75G1159 Tripterygium wilfordii HOM05D005114 ORTHO05D006301 2.2e-26 122.9 136 52.9
THA.LOC104819696 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 2.9e-26 122.5 127 53.5
HanXRQChr16g0528291 Helianthus annuus HOM05D005114 ORTHO05D006301 4.9e-26 121.7 123 51.2
unitig_0.g2368 Utricularia gibba HOM05D005114 ORTHO05D006301 1.1e-25 120.6 143 50.3
HPP92_018957 Vanilla planifolia HOM05D005114 ORTHO05D006301 1.1e-25 120.6 157 42.7
HanXRQChr14g0449881 Helianthus annuus HOM05D005114 ORTHO05D006301 2.4e-25 119.4 142 47.9
LjContig00081g0003123 Lotus japonicus HOM05D005114 ORTHO05D006301 1.2e-24 117.1 128 51.6
Sp7g33120 Schrenkiella parvula HOM05D005114 ORTHO05D006301 3.5e-24 115.5 127 48.8
Thhalv10026488m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 4.6e-24 115.2 110 51.8
HPP92_019672 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.6e-24 115.2 157 42.0
Carub.0007s0497 Capsella rubella HOM05D005114 ORTHO05D006301 6.0e-24 114.8 131 48.9
AL7G15830 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 2.3e-23 112.8 132 48.5
AT4G35320 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 2.3e-23 112.8 132 48.5
A01p03230 Brassica napus HOM05D005114 ORTHO05D006301 2.3e-23 112.8 122 49.2
BolC1t00348H Brassica oleracea HOM05D005114 ORTHO05D006301 2.3e-23 112.8 122 49.2
BraA01t00308Z Brassica rapa HOM05D005114 ORTHO05D006301 3.0e-23 112.5 122 48.4
CSS0049408 Camellia sinensis var. sinensis HOM05D005114 ORTHO05D006301 3.9e-23 112.1 143 48.3
ATR0605G119 Amborella trichopoda HOM05D005114 ORTHO05D006301 8.7e-23 110.9 148 43.2
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 1.1e-22 110.5 84 60.7
Glyma.14G000700 Glycine max HOM05D005114 ORTHO05D006301 1.1e-22 110.5 126 51.6
unitig_26.g9983 Utricularia gibba HOM05D005114 ORTHO05D006301 1.5e-22 110.2 135 45.9
BcaNung00605 Brassica carinata HOM05D005114 ORTHO05D006301 1.9e-22 109.8 126 48.4
C01p03580 Brassica napus HOM05D005114 ORTHO05D006301 1.9e-22 109.8 126 48.4
CARHR243650 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.9e-22 109.8 118 50.0
AUR62013183 Chenopodium quinoa HOM05D005114 ORTHO05D006301 3.3e-22 109.0 83 57.8
Aa31LG2G14950 Aethionema arabicum HOM05D005114 ORTHO05D006301 4.3e-22 108.6 125 44.8
THA.LOC104807409 Tarenaya hassleriana HOM05D005114 ORTHO05D006301 5.6e-22 108.2 130 50.0
unitig_749.g13979 Utricularia gibba HOM05D005114 ORTHO05D006301 7.3e-22 107.8 135 46.7
PSO541G2758 Papaver somniferum HOM05D005114 ORTHO05D006301 9.6e-22 107.5 152 40.1
PSO675G3082 Papaver somniferum HOM05D005114 ORTHO05D006301 9.6e-22 107.5 151 40.4
CAN.G1645.5 Capsicum annuum HOM05D005114 ORTHO05D006301 2.6e-19 99.4 103 49.5
Zm00001eb188970 Zea mays HOM05D005114 ORTHO05D006301 3.2e-17 92.4 141 43.3
SEGI_06952 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 4.2e-17 92.0 140 38.6
TPR.G18628 Trifolium pratense HOM05D005114 ORTHO05D006301 7.1e-17 91.3 91 52.7
Medtr5g099250 Medicago truncatula HOM05D005114 ORTHO05D006301 1.2e-16 90.5 148 41.9
Ca_06504_v3 Cicer arietinum L. HOM05D005114 ORTHO05D006301 3.5e-16 89.0 151 44.4
HPP92_017809 Vanilla planifolia HOM05D005114 ORTHO05D006301 4.6e-16 88.6 143 42.7
Carub.0003s3126 Capsella rubella HOM05D005114 ORTHO05D006301 7.9e-16 87.8 130 42.3
Thhalv10023149m.g Eutrema salsugineum HOM05D005114 ORTHO05D006301 1.0e-15 87.4 131 42.7
Zm00001eb035190 Zea mays HOM05D005114 ORTHO05D006301 1.0e-15 87.4 152 34.2
A07p03740 Brassica napus HOM05D005114 ORTHO05D006301 3.9e-15 85.5 118 44.9
AT2G17300 Arabidopsis thaliana HOM05D005114 ORTHO05D006301 8.7e-15 84.3 140 40.0
BcaC06g36254 Brassica carinata HOM05D005114 ORTHO05D006301 1.1e-14 84.0 118 44.1
C07p05980 Brassica napus HOM05D005114 ORTHO05D006301 1.1e-14 84.0 118 44.1
BolC7t41007H Brassica oleracea HOM05D005114 ORTHO05D006301 1.1e-14 84.0 118 44.1
BraA07t28162Z Brassica rapa HOM05D005114 ORTHO05D006301 4.3e-14 82.0 118 42.4
Lalb_Chr10g0107691 Lupinus albus HOM05D005114 ORTHO05D006301 4.3e-14 82.0 136 40.4
BcaB03g16485 Brassica carinata HOM05D005114 ORTHO05D006301 1.6e-13 80.1 116 41.4
AL3G50180 Arabidopsis lyrata HOM05D005114 ORTHO05D006301 1.4e-12 77.0 139 38.1
SEGI_30505 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 3.1e-12 75.9 80 45.0
Gohir.A12G012850 Gossypium hirsutum HOM05D005114 ORTHO05D006301 3.4e-11 72.4 64 51.6
CARHR107410 Cardamine hirsuta HOM05D005114 ORTHO05D006301 1.3e-10 70.5 140 38.6
RcHm_v2.0_Chr4g0418711 Rosa chinensis HOM05D005114 ORTHO05D006301 1.3e-10 70.5 63 57.1
Sp3g30650 Schrenkiella parvula HOM05D005114 ORTHO05D006301 1.3e-10 70.5 116 37.9
Zm00001eb199930 Zea mays HOM05D005114 ORTHO05D006301 8.4e-10 67.8 159 32.1
SEGI_39678 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 1.1e-09 67.4 80 41.2
Lju1609C0T0 Lonicera japonica HOM05D005114 ORTHO05D006301 3.2e-09 65.9 53 49.1
SEGI_36834 Sequoiadendron giganteum HOM05D005114 ORTHO05D006301 7.9e-08 61.2 95 38.9


User provided reference genes

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