Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 0.0e+00 2611.6 1346 100.0
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 0.0e+00 1958.3 1329 80.5
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 0.0e+00 1801.6 1307 75.5
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 0.0e+00 1746.9 1338 73.6
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 0.0e+00 1729.5 1333 71.7
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 4.7e-197 693.0 1423 39.1
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 1.3e-194 684.9 1425 38.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.4e-185 654.8 1390 38.1
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 8.9e-172 609.0 1431 35.4
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 5.9e-168 596.3 1458 35.9
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 8.9e-164 582.4 1412 35.9
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 5.8e-163 579.7 1427 35.2
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 9.2e-161 572.4 1403 34.7
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 2.8e-157 560.8 1422 34.0
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 1.7e-154 551.6 1412 34.5
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 4.1e-153 547.0 1413 33.7
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.6e-152 545.0 1422 34.7
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 3.5e-152 543.9 1370 34.4
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 7.8e-152 542.7 1412 33.9
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.2e-147 528.9 1385 33.6
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 5.8e-147 526.6 1351 34.1
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.9e-146 524.2 1374 33.5
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 6.6e-143 513.1 1388 34.1
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.4e-140 504.6 1408 32.8
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 3.1e-140 504.2 1407 33.5
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.2e-138 498.0 1406 33.6
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 8.4e-138 496.1 1319 33.7
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.1e-137 495.7 1520 31.4
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.4e-137 494.6 1411 33.2
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 5.6e-134 483.4 1381 33.7
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.6e-133 481.9 1406 33.4
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 2.2e-130 471.5 1395 31.6
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 4.2e-129 467.2 1485 31.8
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 3.3e-126 457.6 1385 32.3
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 2.4e-124 451.4 1370 31.6
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 9.3e-121 439.5 1563 30.2
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 2.1e-120 438.3 1407 31.1
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 3.5e-120 437.6 1226 31.9
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.1e-118 432.6 1324 31.3
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.1e-118 432.6 1324 31.3
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 4.0e-116 424.1 1346 31.8
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 3.4e-115 421.0 1307 30.7
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 3.4e-115 421.0 1390 30.9
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 7.6e-115 419.9 1307 31.0
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 8.7e-111 406.4 1343 30.4
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 5.7e-110 403.7 1312 30.3
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.7e-109 401.0 1250 31.0
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.2e-107 396.0 1416 30.5
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 5.8e-107 393.7 1343 32.2
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 5.0e-106 390.6 1394 30.7
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.4e-105 389.0 981 32.6
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 4.2e-105 387.5 1397 31.4
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 6.1e-104 383.6 1327 29.2
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 5.1e-103 380.6 1329 29.5
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 5.7e-102 377.1 1316 29.3
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 2.2e-101 375.2 1331 30.1
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 8.2e-101 373.2 1371 30.4
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 1.1e-100 372.9 1326 29.5
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 1.1e-100 372.9 1326 29.5
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 6.9e-100 370.2 1327 29.5
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.0e-99 368.6 1332 30.1
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 2.6e-99 368.2 1359 29.6
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 5.9e-99 367.1 1325 29.4
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.7e-98 365.5 1325 29.8
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 3.8e-98 364.4 1371 30.1
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 8.5e-98 363.2 1347 29.5
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 7.2e-97 360.1 1371 29.1
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 6.1e-96 357.1 1388 28.2
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 2.3e-95 355.1 1332 29.4
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 6.7e-95 353.6 1377 29.0
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 1.3e-93 349.4 1360 30.4
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 8.2e-93 346.7 1410 28.7
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 1.8e-92 345.5 1319 29.0
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.6e-88 332.4 985 32.0
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 3.3e-86 324.7 1316 29.0
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 9.7e-86 323.2 1448 28.1
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.7e-85 322.4 745 34.5
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 8.2e-85 320.1 455 41.8
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.5e-83 315.8 1247 28.8
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.6e-80 305.8 1346 28.4
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.1e-80 305.4 1453 27.2
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.0e-79 303.1 1553 27.3
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.3e-79 302.0 1145 29.3
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 2.6e-78 298.5 1409 27.1
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 7.4e-78 297.0 1204 28.6
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 4.5e-75 287.7 472 39.2
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 2.2e-74 285.4 507 36.5
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 8.0e-72 276.9 1247 27.7
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.0e-71 276.6 615 34.1
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 2.3e-71 275.4 514 37.0
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 4.4e-70 271.2 642 31.5
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 1.3e-69 269.6 1312 26.0
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 8.3e-69 266.9 1328 28.1
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.4e-68 266.2 332 47.6
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 7.7e-67 260.4 472 36.9
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.7e-66 259.2 1347 25.5
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 2.2e-66 258.8 1362 26.2
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.8e-66 258.1 786 34.1
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 4.1e-60 238.0 1344 25.8
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 1.9e-57 229.2 1301 25.5
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.6e-54 218.8 398 37.4
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 4.4e-54 218.0 1302 25.6
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 5.9e-51 207.6 1345 25.5
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 1.3e-50 206.5 1582 23.8
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.3e-50 206.5 602 31.2
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 3.3e-49 201.8 276 40.9
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 5.6e-49 201.1 474 32.9
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 3.1e-47 195.3 306 36.3
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 7.5e-46 190.7 262 50.0
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 1.9e-41 176.0 263 37.3
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.6e-38 165.6 339 40.1
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 3.2e-36 158.7 1296 21.8
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 7.8e-35 154.1 296 39.5
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 3.9e-34 151.8 256 44.1
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 4.9e-29 134.8 166 47.0
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 7.3e-25 120.9 123 60.2
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 7.3e-25 120.9 123 60.2
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 1.6e-24 119.8 145 42.8
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 2.8e-24 119.0 153 38.6
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 2.6e-22 112.5 263 34.2
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.9e-20 106.3 129 51.9
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.9e-20 106.3 127 45.7
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 4.2e-20 105.1 350 30.6
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 3.0e-18 99.0 112 48.2
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.8e-16 91.7 116 50.0
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.2e-13 82.8 473 26.2
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 2.7e-11 75.9 120 43.3
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.1e-09 70.5 136 36.8
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.5e-09 70.1 266 31.6
Glyma.07G011650 Glycine max HOM05D005171 ORTHO05D006343 1.9e-09 69.7 75 44.0
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 3.3e-09 68.9 75 49.3
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 3.3e-09 68.9 214 33.2
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 7.3e-09 67.8 107 34.6
SEGI_34464 Sequoiadendron giganteum HOM05D005171 ORTHO05D030606 9.6e-09 67.4 188 26.1
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 3.1e-07 62.4 133 37.6
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 6.9e-07 61.2 53 60.4
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 6.9e-07 61.2 77 41.6
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 1.2e-06 60.5 88 46.6


User provided reference genes

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