Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G003780 Citrullus lanatus HOM05D006668 ORTHO05D008252 5.3e-221 770.8 402 100.0
ClCG02G002300 Citrullus lanatus HOM05D006668 ORTHO05D008252 5.3e-221 770.8 402 100.0
ClCG03G006150 Citrullus lanatus HOM05D006668 ORTHO05D008252 8.8e-160 567.4 416 78.4
MELO3C018863.2 Cucumis melo HOM05D006668 ORTHO05D008252 1.2e-145 520.4 418 72.2
CsaV3_7G003140 Cucumis sativus L. HOM05D006668 ORTHO05D008252 1.5e-138 496.9 418 70.3
Sed0009608 Sechium edule HOM05D006668 ORTHO05D008252 1.7e-131 473.4 425 67.1
Sed0015399 Sechium edule HOM05D006668 ORTHO05D008252 1.5e-106 390.6 400 59.8
QL08p040692 Quercus lobata HOM05D006668 ORTHO05D008252 1.7e-62 244.2 439 41.9
Cfa014669 Carpinus fangiana HOM05D006668 ORTHO05D008252 6.5e-62 242.3 457 40.5
Manes.12G086300 Manihot esculenta HOM05D006668 ORTHO05D008252 1.1e-61 241.5 439 41.2
CiPaw.03G182600 Carya illinoinensis HOM05D006668 ORTHO05D008252 4.8e-57 226.1 442 40.7
Lalb_Chr03g0029681 Lupinus albus HOM05D006668 ORTHO05D008252 1.6e-55 221.1 437 40.0
Glyma.06G287100 Glycine max HOM05D006668 ORTHO05D008252 1.7e-54 217.6 442 38.7
Prupe.2G094200 Prunus persica HOM05D006668 ORTHO05D008252 5.0e-54 216.1 438 38.6
COL.COLO4_07343 Corchorus olitorius HOM05D006668 ORTHO05D008252 8.5e-54 215.3 479 38.4
Ciclev10015198m.g Citrus clementina HOM05D006668 ORTHO05D008252 5.5e-53 212.6 463 38.0
Thecc.02G187500 Theobroma cacao HOM05D006668 ORTHO05D008252 8.0e-52 208.8 470 37.2
Cpa.g.sc165.1 Carica papaya HOM05D006668 ORTHO05D008252 1.4e-51 208.0 432 37.7
Gohir.A08G243900 Gossypium hirsutum HOM05D006668 ORTHO05D008252 1.4e-51 208.0 436 38.3
Duzib132G0616 Durio zibethinus HOM05D006668 ORTHO05D008252 5.2e-51 206.1 476 36.6
GSVIVG01020613001 Vitis vinifera HOM05D006668 ORTHO05D008252 5.2e-51 206.1 441 40.6
Glyma.12G119000 Glycine max HOM05D006668 ORTHO05D008252 2.0e-50 204.1 445 37.3
FvH4_5g30510 Fragaria vesca HOM05D006668 ORTHO05D008252 2.6e-50 203.8 419 39.9
FAN13G2061 Fragaria x ananassa HOM05D006668 ORTHO05D008252 3.3e-50 203.4 423 39.5
Gorai.004G282700 Gossypium raimondii HOM05D006668 ORTHO05D008252 4.4e-50 203.0 436 38.5
RcHm_v2.0_Chr7g0225261 Rosa chinensis HOM05D006668 ORTHO05D008252 5.7e-50 202.6 426 38.3
FAN08G3049 Fragaria x ananassa HOM05D006668 ORTHO05D008252 2.2e-49 200.7 424 38.7
FAN18G2410 Fragaria x ananassa HOM05D006668 ORTHO05D008252 2.2e-49 200.7 423 39.7
VMungo0037G0001 Vigna mungo HOM05D006668 ORTHO05D008252 2.2e-49 200.7 432 38.9
Gohir.D08G264800 Gossypium hirsutum HOM05D006668 ORTHO05D008252 4.8e-49 199.5 434 38.9
arahy.Tifrunner.gnm1.ann1.Y4MWM5 Arachis hypogaea HOM05D006668 ORTHO05D008252 3.1e-48 196.8 446 36.1
CANSAT54G0862 Cannabis sativa HOM05D006668 ORTHO05D008252 4.1e-48 196.4 429 36.6
Ca_18916_v3 Cicer arietinum L. HOM05D006668 ORTHO05D008252 4.1e-48 196.4 439 36.9
Atru.chr6.2861 Acer truncatum HOM05D006668 ORTHO05D008252 3.5e-47 193.4 447 35.8
MD15G1126800 Malus domestica HOM05D006668 ORTHO05D008252 8.5e-46 188.7 439 37.1
Phvul.010G089800 Phaseolus vulgaris HOM05D006668 ORTHO05D008252 8.5e-46 188.7 433 37.2
PGR142G0029 Punica granatum HOM05D006668 ORTHO05D008252 2.5e-45 187.2 436 38.1
Medtr4g079100 Medicago truncatula HOM05D006668 ORTHO05D008252 3.6e-44 183.3 436 35.8
TWI59G1373 Tripterygium wilfordii HOM05D006668 ORTHO05D008252 6.1e-44 182.6 425 36.2
vmacro12351 Vaccinium macrocarpon HOM05D006668 ORTHO05D008252 6.1e-44 182.6 425 36.5
TAR627G0647 Trochodendron aralioides HOM05D006668 ORTHO05D008252 8.0e-44 182.2 454 36.1
Actinidia10993 Actinidia chinensis HOM05D006668 ORTHO05D008252 1.0e-43 181.8 396 38.4
Cc05_g07800 Coffea canephora HOM05D006668 ORTHO05D008252 2.3e-43 180.6 433 37.6
Lj3g0004052 Lotus japonicus HOM05D006668 ORTHO05D008252 3.0e-43 180.3 433 35.1
Hma1.2p1_0002F.1_g002330 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 1.5e-42 177.9 400 36.2
Potri.017G017200 Populus trichocarpa HOM05D006668 ORTHO05D008252 2.6e-42 177.2 497 33.0
Nn1g06398 Nelumbo nucifera HOM05D006668 ORTHO05D008252 2.8e-41 173.7 397 36.5
Aa31LG5G3090 Aethionema arabicum HOM05D006668 ORTHO05D008252 3.7e-41 173.3 455 35.8
Rhsim06G0136200 Rhododendron simsii HOM05D006668 ORTHO05D008252 5.4e-40 169.5 424 34.4
THA.LOC104801157 Tarenaya hassleriana HOM05D006668 ORTHO05D008252 5.4e-40 169.5 454 35.7
Oeu036086.1 Olea europaea HOM05D006668 ORTHO05D008252 9.1e-40 168.7 442 35.1
TPR.G14253 Trifolium pratense HOM05D006668 ORTHO05D008252 7.7e-39 165.6 442 33.5
Hma1.2p1_0002F.1_g002320 Hydrangea macrophylla HOM05D006668 ORTHO05D008252 2.9e-38 163.7 201 48.8
DCAR_009761 Daucus carota HOM05D006668 ORTHO05D008252 6.5e-38 162.5 440 34.3
BcaC04g21861 Brassica carinata HOM05D006668 ORTHO05D008252 8.6e-38 162.2 420 35.7
Peaxi162Scf00189g00018 Petunia axillaris HOM05D006668 ORTHO05D008252 1.5e-37 161.4 442 33.7
Psat7g136840 Pisum sativum HOM05D006668 ORTHO05D008252 4.2e-37 159.8 437 33.4
Aqoxy1G02297 Aquilegia oxysepala HOM05D006668 ORTHO05D008252 5.5e-37 159.5 482 32.8
BolC9t55549H Brassica oleracea HOM05D006668 ORTHO05D008252 2.1e-36 157.5 420 35.5
Sp2g08980 Schrenkiella parvula HOM05D006668 ORTHO05D008252 2.1e-36 157.5 454 33.3
AL8G15870 Arabidopsis lyrata HOM05D006668 ORTHO05D008252 6.1e-36 156.0 441 33.6
SalBow7G4646 Salvia bowleyana HOM05D006668 ORTHO05D008252 6.1e-36 156.0 440 33.6
C09p26530 Brassica napus HOM05D006668 ORTHO05D008252 8.0e-36 155.6 420 35.2
A09p20930 Brassica napus HOM05D006668 ORTHO05D008252 2.3e-35 154.1 424 33.7
BraA09t37693Z Brassica rapa HOM05D006668 ORTHO05D008252 2.3e-35 154.1 424 33.7
MBI06_g42697_MAGBIO Magnolia biondii HOM05D006668 ORTHO05D008252 3.0e-35 153.7 460 31.5
Carub.0008s0437 Capsella rubella HOM05D006668 ORTHO05D008252 4.4e-34 149.8 439 32.1
Sopen07g027510 Solanum pennellii HOM05D006668 ORTHO05D008252 6.3e-33 146.0 439 32.3
Hund01006 Selenicereus undatus HOM05D006668 ORTHO05D008252 8.3e-33 145.6 449 31.8
CARHR179120 Cardamine hirsuta HOM05D006668 ORTHO05D008252 1.1e-32 145.2 201 46.8
Haze_13261 Corylus avellana HOM05D006668 ORTHO05D008252 1.1e-32 145.2 171 53.2
Thhalv10003234m.g Eutrema salsugineum HOM05D006668 ORTHO05D008252 1.1e-32 145.2 434 32.7
PGSC0003DMG400009383 Solanum tuberosum HOM05D006668 ORTHO05D008252 1.1e-32 145.2 447 32.0
ECA232G0319 Erigeron canadensis HOM05D006668 ORTHO05D008252 3.1e-32 143.7 424 33.5
BcaC06g31649 Brassica carinata HOM05D006668 ORTHO05D008252 4.1e-32 143.3 199 47.7
PSO675G8266 Papaver somniferum HOM05D006668 ORTHO05D008252 7.0e-32 142.5 456 32.7
Lsat_1_v5_gn_8_69500 Lactuca sativa HOM05D006668 ORTHO05D008252 9.2e-32 142.1 428 32.5
AT5G44150 Arabidopsis thaliana HOM05D006668 ORTHO05D008252 1.2e-31 141.7 435 32.4
SGA_v2.0_scaffold58G20553 Striga asiatica HOM05D006668 ORTHO05D008252 2.0e-31 141.0 417 31.7
SGA_v2.0_scaffold70G23480 Striga asiatica HOM05D006668 ORTHO05D008252 7.8e-31 139.0 434 31.8
PSO541G3384 Papaver somniferum HOM05D006668 ORTHO05D008252 1.0e-30 138.7 461 32.8
Sc12g0003270 Simmondsia chinensis HOM05D006668 ORTHO05D008252 1.0e-30 138.7 452 30.5
MSTRG.5024 Avicennia marina HOM05D006668 ORTHO05D008252 3.8e-30 136.7 446 32.7
CDE10G0622 Ceratophyllum demersum HOM05D006668 ORTHO05D008252 5.0e-30 136.3 428 32.2
Solyc07g053560.3 Solanum lycopersicum HOM05D006668 ORTHO05D008252 1.9e-29 134.4 433 32.1
Sabra17G0013400 Salix brachista HOM05D006668 ORTHO05D008252 3.6e-28 130.2 469 31.6
CAN.G1808.7 Capsicum annuum HOM05D006668 ORTHO05D008252 5.2e-27 126.3 392 32.7
Migut.M00152 Erythranthe guttata HOM05D006668 ORTHO05D008252 1.5e-26 124.8 330 33.0
Nitab4.5_0000621g0040 Nicotiana tabacum HOM05D006668 ORTHO05D008252 2.6e-26 124.0 452 31.2
Eucgr.K01063 Eucalyptus grandis HOM05D006668 ORTHO05D008252 1.7e-25 121.3 444 29.5
EL10Ac9g20828 Beta vulgaris HOM05D006668 ORTHO05D008252 2.2e-25 120.9 479 27.8
HanXRQChr17g0555041 Helianthus annuus HOM05D006668 ORTHO05D008252 8.3e-25 119.0 419 30.5
AUR62036068 Chenopodium quinoa HOM05D006668 ORTHO05D008252 4.1e-24 116.7 467 29.1
Nitab4.5_0006091g0020 Nicotiana tabacum HOM05D006668 ORTHO05D008252 2.7e-23 114.0 444 29.1
BcaC04g21859 Brassica carinata HOM05D006668 ORTHO05D008252 3.5e-23 113.6 181 44.2
Duzib248G1400 Durio zibethinus HOM05D006668 ORTHO05D008252 3.9e-22 110.2 325 30.5
HPP92_023281 Vanilla planifolia HOM05D006668 ORTHO05D008252 6.2e-20 102.8 477 27.3
Zm00001eb295870 Zea mays HOM05D006668 ORTHO05D008252 6.2e-20 102.8 409 29.6
Oeu016899.1 Olea europaea HOM05D006668 ORTHO05D008252 1.2e-18 98.6 292 31.2
SEGI_30235 Sequoiadendron giganteum HOM05D006668 ORTHO05D008252 4.4e-18 96.7 419 27.0
Os05g0564000 Oryza sativa ssp. japonica HOM05D006668 ORTHO05D008252 5.8e-18 96.3 191 35.1
Dinv06849 Davidia involucrata HOM05D006668 ORTHO05D008252 2.4e-16 90.9 284 33.8
CSS0030364 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 9.5e-13 79.0 132 44.7
CSS0015867 Camellia sinensis var. sinensis HOM05D006668 ORTHO05D008252 2.3e-11 74.3 129 44.2
Haze_13262 Corylus avellana HOM05D006668 ORTHO05D008252 6.8e-11 72.8 233 33.0
ATR0602G055 Amborella trichopoda HOM05D006668 ORTHO05D008252 2.6e-10 70.9 314 30.3
BcaB07g30967 Brassica carinata HOM05D006668 ORTHO05D008252 9.9e-10 68.9 144 40.3
Mapoly0050s0110 Marchantia polymorpha HOM05D006668 ORTHO05D008252 6.4e-09 66.2 446 24.7
Ah.01g015540 Amaranthus hybridus HOM05D006668 ORTHO05D008252 1.1e-08 65.5 141 36.2
Sabra07G0109400 Salix brachista HOM05D006668 ORTHO05D008252 2.7e-07 60.8 71 40.8
AUR62043432 Chenopodium quinoa HOM05D006668 ORTHO05D008252 2.3e-06 57.8 134 37.3


User provided reference genes

Program Settings