Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G001830 Citrullus lanatus HOM05D002846 ORTHO05D002692 2.8e-89 332.0 181 100.0
MELO3C018808.2 Cucumis melo HOM05D002846 ORTHO05D002692 1.5e-58 229.9 162 77.2
CsaV3_7G003710 Cucumis sativus L. HOM05D002846 ORTHO05D002692 1.7e-57 226.5 162 75.9
Sed0021551 Sechium edule HOM05D002846 ORTHO05D002692 1.9e-24 116.7 155 52.9
Ciclev10018295m.g Citrus clementina HOM05D002846 ORTHO05D002692 1.4e-16 90.5 164 38.4
TAR624G1330 Trochodendron aralioides HOM05D002846 ORTHO05D002692 2.7e-15 86.3 166 36.7
Glyma.12G194600 Glycine max HOM05D002846 ORTHO05D002692 6.0e-15 85.1 173 39.3
FvH4_6g43420 Fragaria vesca HOM05D002846 ORTHO05D002692 1.0e-14 84.3 158 39.9
FAN05G4571 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.3e-14 83.2 163 39.9
VMungo1080G0378 Vigna mungo HOM05D002846 ORTHO05D002692 3.9e-14 82.4 174 36.2
Lalb_Chr01g0005591 Lupinus albus HOM05D002846 ORTHO05D002692 1.1e-13 80.9 153 35.9
Phvul.005G114400 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 1.1e-13 80.9 169 33.7
TAR627G0783 Trochodendron aralioides HOM05D002846 ORTHO05D002692 1.1e-13 80.9 163 34.4
Psat5g264560 Pisum sativum HOM05D002846 ORTHO05D002692 1.5e-13 80.5 168 36.3
Medtr2g088590 Medicago truncatula HOM05D002846 ORTHO05D002692 1.9e-13 80.1 169 34.9
FAN14G0905 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.5e-13 79.7 158 38.6
TAR626G0168 Trochodendron aralioides HOM05D002846 ORTHO05D002692 2.5e-13 79.7 165 33.3
Gohir.A12G156600 Gossypium hirsutum HOM05D002846 ORTHO05D002692 5.6e-13 78.6 163 39.3
Cfa014424 Carpinus fangiana HOM05D002846 ORTHO05D002692 7.3e-13 78.2 156 40.4
Hma1.2p1_0948F.1_g240490 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 9.6e-13 77.8 163 35.0
Lalb_Chr19g0135751 Lupinus albus HOM05D002846 ORTHO05D002692 1.2e-12 77.4 153 34.6
Potri.014G151900 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.2e-12 77.4 168 33.3
Haze_12882 Corylus avellana HOM05D002846 ORTHO05D002692 1.6e-12 77.0 156 38.5
Duzib251G0618 Durio zibethinus HOM05D002846 ORTHO05D002692 1.6e-12 77.0 166 34.3
FAN02G4078 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.6e-12 77.0 162 38.9
TPR.G4201 Trifolium pratense HOM05D002846 ORTHO05D002692 1.6e-12 77.0 169 33.1
FAN09G0250 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.1e-12 76.6 159 38.4
PGSC0003DMG400025494 Solanum tuberosum HOM05D002846 ORTHO05D002692 2.8e-12 76.3 168 36.3
Aqoxy4G01970 Aquilegia oxysepala HOM05D002846 ORTHO05D002692 3.6e-12 75.9 169 36.7
Sabra14G0115500 Salix brachista HOM05D002846 ORTHO05D002692 3.6e-12 75.9 166 32.5
Atru.chr6.3164 Acer truncatum HOM05D002846 ORTHO05D002692 8.1e-12 74.7 182 32.4
Sopen12g001770 Solanum pennellii HOM05D002846 ORTHO05D002692 8.1e-12 74.7 170 33.5
MD09G1107000 Malus domestica HOM05D002846 ORTHO05D002692 1.4e-11 73.9 174 34.5
Peaxi162Scf00007g01016 Petunia axillaris HOM05D002846 ORTHO05D002692 1.8e-11 73.6 170 31.8
Manes.13G071601 Manihot esculenta HOM05D002846 ORTHO05D002692 2.4e-11 73.2 172 35.5
RcHm_v2.0_Chr2g0159761 Rosa chinensis HOM05D002846 ORTHO05D002692 2.4e-11 73.2 157 34.4
Lalb_Chr14g0367581 Lupinus albus HOM05D002846 ORTHO05D002692 3.1e-11 72.8 161 34.8
Gohir.D12G159433 Gossypium hirsutum HOM05D002846 ORTHO05D002692 4.0e-11 72.4 166 38.0
Gorai.008G172600 Gossypium raimondii HOM05D002846 ORTHO05D002692 6.8e-11 71.6 166 38.0
CANSAT64G1541 Cannabis sativa HOM05D002846 ORTHO05D002692 8.9e-11 71.2 190 32.1
Solyc12g005820.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 8.9e-11 71.2 166 33.7
Prupe.3G218700 Prunus persica HOM05D002846 ORTHO05D002692 1.2e-10 70.9 184 34.2
Eucgr.A01716 Eucalyptus grandis HOM05D002846 ORTHO05D002692 1.5e-10 70.5 168 35.1
Lalb_Chr24g0393141 Lupinus albus HOM05D002846 ORTHO05D002692 2.0e-10 70.1 93 44.1
Phvul.011G105200 Phaseolus vulgaris HOM05D002846 ORTHO05D002692 2.0e-10 70.1 173 32.9
Nitab4.5_0001884g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 2.6e-10 69.7 160 34.4
Glyma.06G303502 Glycine max HOM05D002846 ORTHO05D002692 3.4e-10 69.3 166 34.3
Glyma.12G100400 Glycine max HOM05D002846 ORTHO05D002692 3.4e-10 69.3 166 34.3
Lj3g0014799 Lotus japonicus HOM05D002846 ORTHO05D002692 3.4e-10 69.3 163 30.1
Thecc.02G312900 Theobroma cacao HOM05D002846 ORTHO05D002692 3.4e-10 69.3 170 30.6
CAN.G1151.1 Capsicum annuum HOM05D002846 ORTHO05D002692 4.4e-10 68.9 189 32.3
Nitab4.5_0000006g0090 Nicotiana tabacum HOM05D002846 ORTHO05D002692 4.4e-10 68.9 165 33.9
PGSC0003DMG400008737 Solanum tuberosum HOM05D002846 ORTHO05D002692 4.4e-10 68.9 169 32.5
Hma1.2p1_0249F.1_g102340 Hydrangea macrophylla HOM05D002846 ORTHO05D002692 5.8e-10 68.6 174 31.6
Lalb_Chr03g0028801 Lupinus albus HOM05D002846 ORTHO05D002692 5.8e-10 68.6 162 32.7
VMungo0971G0001 Vigna mungo HOM05D002846 ORTHO05D002692 5.8e-10 68.6 163 31.9
CARHR097660 Cardamine hirsuta HOM05D002846 ORTHO05D002692 7.6e-10 68.2 173 31.2
CSS0004659 Camellia sinensis var. sinensis HOM05D002846 ORTHO05D002692 9.9e-10 67.8 178 32.6
Ca_26241_v3 Cicer arietinum L. HOM05D002846 ORTHO05D002692 9.9e-10 67.8 168 33.3
Sp3g19720 Schrenkiella parvula HOM05D002846 ORTHO05D002692 9.9e-10 67.8 154 34.4
Nn1g07065 Nelumbo nucifera HOM05D002846 ORTHO05D002692 1.3e-09 67.4 160 36.9
PSO210G5289 Papaver somniferum HOM05D002846 ORTHO05D002692 1.3e-09 67.4 179 31.3
GSVIVG01030606001 Vitis vinifera HOM05D002846 ORTHO05D002692 1.3e-09 67.4 174 32.8
Peaxi162Scf00462g00005 Petunia axillaris HOM05D002846 ORTHO05D002692 1.7e-09 67.0 168 32.1
Duzib268G1153 Durio zibethinus HOM05D002846 ORTHO05D002692 2.2e-09 66.6 150 32.0
Sabra02G0175700 Salix brachista HOM05D002846 ORTHO05D002692 2.2e-09 66.6 177 32.8
C05p41700 Brassica napus HOM05D002846 ORTHO05D002692 2.9e-09 66.2 172 32.0
BolC5t32905H Brassica oleracea HOM05D002846 ORTHO05D002692 2.9e-09 66.2 172 32.0
BolC1t04204H Brassica oleracea HOM05D002846 ORTHO05D002692 3.8e-09 65.9 176 31.8
Glyma.13G308000 Glycine max HOM05D002846 ORTHO05D002692 4.9e-09 65.5 105 41.0
BcaC09g49107 Brassica carinata HOM05D002846 ORTHO05D002692 6.4e-09 65.1 176 31.8
Peaxi162Scf00932g00218 Petunia axillaris HOM05D002846 ORTHO05D002692 6.4e-09 65.1 180 33.9
QL08p033485 Quercus lobata HOM05D002846 ORTHO05D002692 6.4e-09 65.1 156 35.3
PGSC0003DMG400005270 Solanum tuberosum HOM05D002846 ORTHO05D002692 6.4e-09 65.1 164 33.5
A03p42420 Brassica napus HOM05D002846 ORTHO05D002692 8.4e-09 64.7 173 32.4
BraA03t13394Z Brassica rapa HOM05D002846 ORTHO05D002692 8.4e-09 64.7 173 32.4
AUR62008775 Chenopodium quinoa HOM05D002846 ORTHO05D002692 8.4e-09 64.7 145 36.6
Sabra11G0121900 Salix brachista HOM05D002846 ORTHO05D002692 8.4e-09 64.7 179 29.6
BcaC01g03489 Brassica carinata HOM05D002846 ORTHO05D002692 1.1e-08 64.3 173 32.4
BcaC05g28139 Brassica carinata HOM05D002846 ORTHO05D002692 1.1e-08 64.3 159 32.1
BolC3t17475H Brassica oleracea HOM05D002846 ORTHO05D002692 1.1e-08 64.3 173 32.4
TWI36G0639 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 1.1e-08 64.3 166 34.3
C03p51900 Brassica napus HOM05D002846 ORTHO05D002692 1.4e-08 63.9 173 32.4
Nitab4.5_0001176g0060 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.4e-08 63.9 166 33.7
Nitab4.5_0003509g0040 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.4e-08 63.9 155 32.3
Potri.002G230300 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.4e-08 63.9 107 42.1
A01p33250 Brassica napus HOM05D002846 ORTHO05D002692 1.9e-08 63.5 176 31.2
BraA01t03443Z Brassica rapa HOM05D002846 ORTHO05D002692 1.9e-08 63.5 176 31.2
Potri.001G419400 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.9e-08 63.5 174 29.9
AUR62037135 Chenopodium quinoa HOM05D002846 ORTHO05D002692 2.4e-08 63.2 159 29.6
TWI38G2122 Tripterygium wilfordii HOM05D002846 ORTHO05D002692 2.4e-08 63.2 164 32.3
A05p27020 Brassica napus HOM05D002846 ORTHO05D002692 3.2e-08 62.8 173 29.5
BraA05t21588Z Brassica rapa HOM05D002846 ORTHO05D002692 3.2e-08 62.8 173 29.5
BcaB04g19182 Brassica carinata HOM05D002846 ORTHO05D002692 4.2e-08 62.4 173 30.1
BcaB04g20571 Brassica carinata HOM05D002846 ORTHO05D002692 4.2e-08 62.4 171 30.4
RhsimUnG0010900 Rhododendron simsii HOM05D002846 ORTHO05D002692 5.4e-08 62.0 177 30.5
Sopen07g026090 Solanum pennellii HOM05D002846 ORTHO05D002692 5.4e-08 62.0 146 35.6
GSVIVG01001985001 Vitis vinifera HOM05D002846 ORTHO05D002692 5.4e-08 62.0 166 31.3
CiPaw.04G116900 Carya illinoinensis HOM05D002846 ORTHO05D002692 7.1e-08 61.6 150 34.7
AUR62025464 Chenopodium quinoa HOM05D002846 ORTHO05D002692 7.1e-08 61.6 146 33.6
FvH4_3g22010 Fragaria vesca HOM05D002846 ORTHO05D002692 7.1e-08 61.6 168 29.2
Solyc07g052460.3 Solanum lycopersicum HOM05D002846 ORTHO05D002692 7.1e-08 61.6 149 34.9
Sed0016321 Sechium edule HOM05D002846 ORTHO05D002692 9.3e-08 61.2 163 30.1
COL.COLO4_27687 Corchorus olitorius HOM05D002846 ORTHO05D002692 1.2e-07 60.8 108 38.9
Dinv39698 Davidia involucrata HOM05D002846 ORTHO05D002692 1.2e-07 60.8 171 34.5
Potri.011G135700 Populus trichocarpa HOM05D002846 ORTHO05D002692 1.2e-07 60.8 173 28.3
vmacro12218 Vaccinium macrocarpon HOM05D002846 ORTHO05D002692 1.2e-07 60.8 182 31.3
Aa31LG8G8340 Aethionema arabicum HOM05D002846 ORTHO05D002692 1.6e-07 60.5 161 31.7
BcaB06g26277 Brassica carinata HOM05D002846 ORTHO05D002692 1.6e-07 60.5 173 28.9
MELO3C019247.2 Cucumis melo HOM05D002846 ORTHO05D002692 1.6e-07 60.5 157 35.7
FAN25G2313 Fragaria x ananassa HOM05D002846 ORTHO05D002692 1.6e-07 60.5 166 30.1
HanXRQChr15g0496381 Helianthus annuus HOM05D002846 ORTHO05D002692 1.6e-07 60.5 176 30.1
SalBow1G8286 Salvia bowleyana HOM05D002846 ORTHO05D002692 1.6e-07 60.5 160 33.1
MSTRG.12286 Avicennia marina HOM05D002846 ORTHO05D002692 2.1e-07 60.1 159 34.6
FAN21G2316 Fragaria x ananassa HOM05D002846 ORTHO05D002692 2.1e-07 60.1 167 29.9
Lj3g0002811 Lotus japonicus HOM05D002846 ORTHO05D002692 2.1e-07 60.1 171 32.2
Medtr2g083300 Medicago truncatula HOM05D002846 ORTHO05D002692 2.1e-07 60.1 161 31.7
Sabra16G0285000 Salix brachista HOM05D002846 ORTHO05D002692 2.1e-07 60.1 173 31.8
Carub.0003s2176 Capsella rubella HOM05D002846 ORTHO05D002692 2.7e-07 59.7 177 31.6
CiPaw.03G161600 Carya illinoinensis HOM05D002846 ORTHO05D002692 2.7e-07 59.7 139 33.1
Haze_09635 Corylus avellana HOM05D002846 ORTHO05D002692 2.7e-07 59.7 155 32.3
Oeu027251.1 Olea europaea HOM05D002846 ORTHO05D002692 2.7e-07 59.7 154 31.8
TPR.G4595 Trifolium pratense HOM05D002846 ORTHO05D002692 4.6e-07 58.9 166 32.5
arahy.Tifrunner.gnm1.ann1.EJQ6C2 Arachis hypogaea HOM05D002846 ORTHO05D002692 6.0e-07 58.5 183 29.0
Cc05_g04910 Coffea canephora HOM05D002846 ORTHO05D002692 6.0e-07 58.5 160 31.9
Gorai.005G150200 Gossypium raimondii HOM05D002846 ORTHO05D002692 6.0e-07 58.5 154 33.1
arahy.Tifrunner.gnm1.ann1.M85TWM Arachis hypogaea HOM05D002846 ORTHO05D002692 7.8e-07 58.2 183 27.9
Cfa020399 Carpinus fangiana HOM05D002846 ORTHO05D002692 7.8e-07 58.2 156 34.0
Dinv02736 Davidia involucrata HOM05D002846 ORTHO05D002692 7.8e-07 58.2 102 37.3
THA.LOC104808493 Tarenaya hassleriana HOM05D002846 ORTHO05D002692 7.8e-07 58.2 168 31.5
Atru.chr2.3239 Acer truncatum HOM05D002846 ORTHO05D002692 1.0e-06 57.8 100 33.0
Lsat_1_v5_gn_8_128540 Lactuca sativa HOM05D002846 ORTHO05D002692 1.0e-06 57.8 97 38.1
Manes.03G127850 Manihot esculenta HOM05D002846 ORTHO05D002692 1.0e-06 57.8 185 27.0
Nitab4.5_0002083g0020 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.0e-06 57.8 160 30.6
MD03G1209200 Malus domestica HOM05D002846 ORTHO05D002692 1.3e-06 57.4 164 29.9
Nitab4.5_0015723g0010 Nicotiana tabacum HOM05D002846 ORTHO05D002692 1.3e-06 57.4 149 32.9
Sed0000680 Sechium edule HOM05D002846 ORTHO05D002692 2.3e-06 56.6 154 29.9
TPR.G19979 Trifolium pratense HOM05D002846 ORTHO05D002692 2.3e-06 56.6 167 31.1
AL3G35830 Arabidopsis lyrata HOM05D002846 ORTHO05D002692 3.0e-06 56.2 104 35.6
Sopen05g027000 Solanum pennellii HOM05D002846 ORTHO05D002692 3.0e-06 56.2 97 36.1
Thhalv10021505m.g Eutrema salsugineum HOM05D002846 ORTHO05D002692 3.9e-06 55.8 93 41.9
ECA233G0087 Erigeron canadensis HOM05D002846 ORTHO05D002692 5.1e-06 55.5 86 36.0
QL08p012603 Quercus lobata HOM05D002846 ORTHO05D002692 5.1e-06 55.5 156 31.4
Oeu036754.1 Olea europaea HOM05D002846 ORTHO05D002692 6.6e-06 55.1 151 28.5
ClCG05G014610 Citrullus lanatus HOM05D002846 ORTHO05D002692 8.7e-06 54.7 165 28.5
MELO3C018090.2 Cucumis melo HOM05D002846 ORTHO05D002692 8.7e-06 54.7 171 28.7
CsaV3_3G023230 Cucumis sativus L. HOM05D002846 ORTHO05D002692 8.7e-06 54.7 165 25.5


User provided reference genes

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