Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 8.9e-56 219.9 104 100.0
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.5e-39 166.0 108 79.6
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 5.8e-39 164.1 106 79.2
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 9.9e-39 163.3 103 75.7
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.1e-21 106.7 97 55.7
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 2.5e-21 105.5 85 61.2
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 9.3e-21 103.6 104 53.8
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 1.2e-20 103.2 102 52.9
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 2.7e-20 102.1 102 49.0
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 3.5e-20 101.7 102 49.0
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 7.9e-20 100.5 105 49.5
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 1.3e-19 99.8 91 56.0
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 2.3e-19 99.0 103 52.4
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 3.0e-19 98.6 103 51.5
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 8.7e-19 97.1 102 49.0
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.1e-18 96.7 95 47.4
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.1e-18 96.7 102 50.0
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.5e-18 96.3 104 51.9
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.5e-18 96.3 84 54.8
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.9e-18 95.9 86 59.3
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 2.5e-18 95.5 82 58.5
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 2.5e-18 95.5 82 58.5
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 2.5e-18 95.5 88 55.7
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 4.3e-18 94.7 85 56.5
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 4.3e-18 94.7 93 52.7
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 9.7e-18 93.6 102 47.1
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 1.6e-17 92.8 107 48.6
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 8.2e-17 90.5 102 48.0
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 1.4e-16 89.7 82 52.4
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.4e-16 89.7 104 48.1
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 1.8e-16 89.4 101 47.5
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 2.4e-16 89.0 85 57.6
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 2.4e-16 89.0 83 51.8
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 3.1e-16 88.6 102 47.1
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 6.9e-16 87.4 107 47.7
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 9.0e-16 87.0 95 48.4
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.2e-15 86.7 88 51.1
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 1.2e-15 86.7 87 49.4
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 1.5e-15 86.3 101 43.6
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.5e-15 86.3 87 50.6
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 2.0e-15 85.9 87 48.3
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.0e-14 83.6 92 46.7
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.0e-14 83.6 83 49.4
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 1.3e-14 83.2 85 51.8
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 6.5e-14 80.9 87 46.0
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 6.5e-14 80.9 89 46.1
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 8.5e-14 80.5 86 50.0
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 8.5e-14 80.5 80 55.0
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 1.4e-13 79.7 79 49.4
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.5e-13 79.0 77 58.4
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 2.5e-13 79.0 77 58.4
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 4.2e-13 78.2 83 47.0
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 7.2e-13 77.4 84 48.8
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.2e-12 76.6 90 43.3
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 2.7e-12 75.5 87 44.8
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 3.6e-12 75.1 86 40.7
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 6.1e-12 74.3 79 46.8
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.4e-11 73.2 82 45.1
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 8.8e-11 70.5 81 44.4
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 8.8e-11 70.5 82 45.1
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 1.5e-10 69.7 77 46.8
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.5e-10 69.7 87 42.5
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.4e-10 67.4 88 39.8
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 7.4e-10 67.4 91 37.4
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 2.8e-09 65.5 90 36.7
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.7e-09 65.1 82 41.5
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 4.8e-09 64.7 77 44.2
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.8e-08 62.8 88 36.4
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 3.4e-07 58.5 78 39.7
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 3.4e-07 58.5 79 36.7
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 3.4e-07 58.5 79 36.7
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 4.5e-07 58.2 78 38.5
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.5e-07 58.2 64 46.9
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 5.9e-07 57.8 79 41.8
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 5.9e-07 57.8 78 37.2
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 5.9e-07 57.8 98 38.8
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 7.7e-07 57.4 79 35.4
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 7.7e-07 57.4 79 35.4
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 7.7e-07 57.4 79 35.4
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 1.3e-06 56.6 78 34.6
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 1.7e-06 56.2 78 38.5
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.2e-06 55.8 78 37.2
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 2.2e-06 55.8 78 34.6
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 2.9e-06 55.5 78 34.6
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 5.0e-06 54.7 78 34.6
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 5.0e-06 54.7 79 34.2
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 6.5e-06 54.3 79 35.4


User provided reference genes

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