Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 4.0e-69 264.6 133 100.0
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.3e-30 136.7 70 100.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.3e-30 136.7 70 100.0
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 3.7e-30 135.2 70 97.1
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 8.3e-30 134.0 69 98.6
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 8.5e-27 124.0 70 87.1
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 3.4e-23 112.1 93 66.7
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 5.7e-23 111.3 64 84.4
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 7.5e-23 110.9 64 87.5
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 9.8e-23 110.5 64 87.5
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 9.8e-23 110.5 64 87.5
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 9.8e-23 110.5 64 87.5
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 1.7e-22 109.8 64 85.9
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 2.2e-22 109.4 64 85.9
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 2.2e-22 109.4 76 75.0
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 2.8e-22 109.0 64 85.9
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 2.8e-22 109.0 64 85.9
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 2.8e-22 109.0 64 85.9
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 2.8e-22 109.0 63 88.9
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 2.8e-22 109.0 64 84.4
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 2.8e-22 109.0 85 70.6
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 4.8e-22 108.2 64 82.8
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.8e-22 108.2 64 85.9
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 4.8e-22 108.2 63 85.7
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 4.8e-22 108.2 64 85.9
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 6.3e-22 107.8 63 85.7
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 6.3e-22 107.8 63 87.3
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 8.3e-22 107.5 64 84.4
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 8.3e-22 107.5 63 87.3
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 1.4e-21 106.7 63 85.7
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.4e-21 106.7 64 81.2
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 1.4e-21 106.7 63 87.3
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 1.8e-21 106.3 78 71.8
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 1.8e-21 106.3 64 84.4
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 2.4e-21 105.9 63 84.1
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 2.4e-21 105.9 63 85.7
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 2.4e-21 105.9 63 87.3
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.4e-21 105.9 63 85.7
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 2.4e-21 105.9 63 84.1
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.1e-21 105.5 64 85.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 3.1e-21 105.5 64 81.2
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 3.1e-21 105.5 64 79.7
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 4.1e-21 105.1 64 81.2
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.1e-21 105.1 62 83.9
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 5.4e-21 104.8 63 85.7
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 5.4e-21 104.8 63 82.5
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 7.0e-21 104.4 63 84.1
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 7.0e-21 104.4 64 82.8
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 7.0e-21 104.4 64 82.8
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 7.0e-21 104.4 64 81.2
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 7.0e-21 104.4 63 84.1
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 7.0e-21 104.4 63 81.0
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 9.1e-21 104.0 64 82.8
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 9.1e-21 104.0 64 82.8
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 9.1e-21 104.0 64 81.2
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 1.2e-20 103.6 63 84.1
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-20 103.6 63 84.1
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-20 103.6 63 84.1
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-20 103.6 63 84.1
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 1.2e-20 103.6 63 84.1
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.2e-20 103.6 64 84.4
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.2e-20 103.6 64 84.4
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 1.6e-20 103.2 67 77.6
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 1.6e-20 103.2 64 82.8
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.0e-20 102.8 64 82.8
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 2.7e-20 102.4 64 81.2
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 3.5e-20 102.1 63 82.5
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 3.5e-20 102.1 66 77.3
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 4.5e-20 101.7 63 81.0
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 4.5e-20 101.7 68 79.4
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 4.5e-20 101.7 68 79.4
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 4.5e-20 101.7 64 79.7
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 4.5e-20 101.7 64 81.2
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 4.5e-20 101.7 64 81.2
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 5.9e-20 101.3 61 83.6
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 5.9e-20 101.3 63 81.0
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 7.7e-20 100.9 63 81.0
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 7.7e-20 100.9 66 78.8
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 7.7e-20 100.9 66 78.8
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 7.7e-20 100.9 66 78.8
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 7.7e-20 100.9 63 81.0
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 7.7e-20 100.9 64 78.1
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 1.0e-19 100.5 67 79.1
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 1.0e-19 100.5 63 82.5
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 1.0e-19 100.5 70 72.9
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 1.3e-19 100.1 63 81.0
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 1.3e-19 100.1 63 81.0
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 1.3e-19 100.1 61 80.3
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.7e-19 99.8 63 79.4
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.3e-19 99.4 63 79.4
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 2.3e-19 99.4 64 82.8
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.3e-19 99.4 63 77.8
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 2.3e-19 99.4 63 77.8
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 2.9e-19 99.0 64 78.1
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 2.9e-19 99.0 63 81.0
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 2.9e-19 99.0 63 81.0
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.9e-19 99.0 63 77.8
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 2.9e-19 99.0 63 79.4
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 2.9e-19 99.0 63 79.4
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 3.8e-19 98.6 64 76.6
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 3.8e-19 98.6 62 80.6
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 5.0e-19 98.2 63 77.8
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 5.0e-19 98.2 64 78.1
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 6.6e-19 97.8 59 84.7
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 1.1e-18 97.1 59 83.1
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 1.5e-18 96.7 63 81.0
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 1.5e-18 96.7 63 76.2
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 1.9e-18 96.3 63 77.8
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.9e-18 96.3 59 84.7
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 3.3e-18 95.5 63 74.6
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 3.3e-18 95.5 59 81.4
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 3.3e-18 95.5 63 79.4
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 4.2e-18 95.1 68 75.0
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 5.5e-18 94.7 63 77.8
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 7.2e-18 94.4 64 79.7
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 9.5e-18 94.0 65 76.9
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 9.5e-18 94.0 59 79.7
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 9.5e-18 94.0 61 82.0
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 9.5e-18 94.0 59 79.7
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-17 93.6 59 81.4
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-17 93.6 59 81.4
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.2e-17 93.6 59 79.7
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 1.2e-17 93.6 61 80.3
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.6e-17 93.2 59 79.7
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 1.6e-17 93.2 59 79.7
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 1.0e-16 90.5 61 77.0
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 1.4e-16 90.1 63 76.2
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 2.0e-15 86.3 58 77.6
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 3.4e-15 85.5 57 77.2
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-13 80.5 48 85.4
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.1e-13 80.5 48 85.4
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 2.7e-12 75.9 111 44.1
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.0e-11 73.9 65 60.0
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 2.9e-11 72.4 39 89.7
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 3.9e-11 72.0 95 45.3
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 6.6e-11 71.2 60 65.0
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 6.6e-11 71.2 39 89.7
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 4.3e-10 68.6 50 68.0
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 5.6e-10 68.2 59 57.6
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 1.2e-09 67.0 44 72.7
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.6e-09 66.6 39 82.1
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.6e-09 66.6 60 61.7


User provided reference genes

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