Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 1.5e-46 189.1 93 100.0
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 5.4e-44 180.6 93 95.7
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 7.0e-44 180.3 92 95.7
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 3.5e-43 177.9 93 93.5
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 1.2e-40 169.5 93 90.3
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 8.6e-26 120.2 93 64.5
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 4.3e-25 117.9 93 63.4
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 6.2e-24 114.0 94 62.8
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.3e-23 112.1 93 61.3
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 6.8e-23 110.5 94 61.7
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 8.9e-23 110.2 94 59.6
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 2.6e-22 108.6 97 57.7
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 5.8e-22 107.5 93 59.1
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 4.9e-21 104.4 91 59.3
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 6.4e-21 104.0 94 57.4
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 6.4e-21 104.0 104 53.8
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 6.4e-21 104.0 93 57.0
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 8.4e-21 103.6 94 55.3
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 1.4e-20 102.8 85 61.2
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 1.9e-20 102.4 93 54.8
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 3.2e-20 101.7 93 57.0
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 7.1e-20 100.5 93 53.8
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 9.2e-20 100.1 95 55.8
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 9.2e-20 100.1 93 54.8
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.6e-19 99.4 90 54.4
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 1.6e-19 99.4 94 57.4
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 2.1e-19 99.0 93 57.0
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 2.1e-19 99.0 93 54.8
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.5e-19 98.2 97 54.6
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 4.6e-19 97.8 93 54.8
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 6.0e-19 97.4 95 53.7
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.0e-18 96.7 96 52.1
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.0e-18 96.7 96 53.1
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 1.3e-18 96.3 93 53.8
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.3e-18 96.3 95 54.7
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 3.0e-18 95.1 93 54.8
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 3.0e-18 95.1 87 59.8
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 5.1e-18 94.4 93 51.6
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 1.1e-17 93.2 94 55.3
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 1.9e-17 92.4 86 54.7
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 4.3e-17 91.3 93 51.6
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 5.6e-17 90.9 91 56.0
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 5.6e-17 90.9 95 49.5
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 5.6e-17 90.9 94 54.3
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 5.6e-17 90.9 94 51.1
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 7.3e-17 90.5 94 56.4
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 9.6e-17 90.1 93 51.6
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 9.6e-17 90.1 93 51.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 1.2e-16 89.7 92 52.2
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 2.1e-16 89.0 94 52.1
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 2.1e-16 89.0 94 56.4
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.8e-16 88.6 93 52.7
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.8e-16 88.6 94 53.2
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 3.6e-16 88.2 93 51.6
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.2e-16 87.4 93 51.6
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.1e-15 86.7 94 46.8
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.4e-15 85.5 90 52.2
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.1e-15 85.1 94 54.3
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 3.1e-15 85.1 94 45.7
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 3.1e-15 85.1 94 45.7
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 5.2e-15 84.3 93 49.5
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 5.2e-15 84.3 93 49.5
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 6.8e-15 84.0 94 48.9
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.2e-14 83.2 89 51.7
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 1.2e-14 83.2 93 49.5
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.2e-14 83.2 92 53.3
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.4e-14 81.6 93 49.5
Sabra13G0119300 Salix brachista HOM05D004838 ORTHO05D005373 3.4e-14 81.6 90 54.4
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 7.6e-14 80.5 96 52.1
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.9e-13 77.8 98 50.0
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.4e-13 77.4 97 48.5
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 1.1e-12 76.6 93 48.4
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 1.4e-12 76.3 94 47.9
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.4e-12 76.3 94 47.9
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 4.2e-12 74.7 92 43.5
Lalb_Chr22g0356341 Lupinus albus HOM05D004838 ORTHO05D005373 7.1e-12 73.9 93 43.0
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 1.2e-11 73.2 95 51.6
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 2.7e-11 72.0 94 47.9
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.5e-11 71.6 100 46.0
CARHR235950 Cardamine hirsuta HOM05D004838 ORTHO05D005373 4.6e-11 71.2 96 46.9
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.0e-11 70.9 98 45.9
BcaNung01586 Brassica carinata HOM05D004838 ORTHO05D005373 7.8e-11 70.5 97 47.4
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 1.3e-10 69.7 87 46.0
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.7e-10 69.3 85 44.7
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.7e-10 69.3 93 44.1
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 1.7e-10 69.3 93 43.0
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 2.3e-10 68.9 95 47.4
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 2.3e-10 68.9 95 47.4
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 2.3e-10 68.9 93 44.1
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 3.0e-10 68.6 95 47.4
MELO3C013538.2 Cucumis melo HOM05D031423 ORTHO05D034979 3.0e-10 68.6 98 48.0
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 3.0e-10 68.6 95 48.4
ClCG02G017310 Citrullus lanatus HOM05D031423 ORTHO05D005373 3.9e-10 68.2 87 48.3
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 5.1e-10 67.8 101 42.6
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 6.6e-10 67.4 75 48.0
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 1.1e-09 66.6 88 39.8
BcaC09g50503 Brassica carinata HOM05D004838 ORTHO05D005373 1.5e-09 66.2 98 43.9
A01p19650 Brassica napus HOM05D004838 ORTHO05D005373 1.5e-09 66.2 98 43.9
C01p24680 Brassica napus HOM05D004838 ORTHO05D005373 1.5e-09 66.2 98 43.9
BolC1t02417H Brassica oleracea HOM05D004838 ORTHO05D005373 1.5e-09 66.2 98 43.9
BraA01t01898Z Brassica rapa HOM05D004838 ORTHO05D005373 1.5e-09 66.2 98 43.9
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.5e-09 66.2 95 47.4
Thhalv10026689m.g Eutrema salsugineum HOM05D004838 ORTHO05D005373 1.9e-09 65.9 94 47.9
Sc21g0002530 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.9e-09 65.9 88 44.3
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 3.3e-09 65.1 96 43.8
BcaB03g12560 Brassica carinata HOM05D004838 ORTHO05D005373 4.3e-09 64.7 97 43.3
Sp7g26200 Schrenkiella parvula HOM05D004838 ORTHO05D005373 5.6e-09 64.3 94 46.8
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 7.3e-09 63.9 94 46.8
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 7.3e-09 63.9 93 43.0
Sc21g0002480 Simmondsia chinensis HOM05D004838 ORTHO05D005373 9.6e-09 63.5 89 41.6
Sed0022545 Sechium edule HOM05D004838 ORTHO05D005373 1.6e-08 62.8 96 44.8
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 2.1e-08 62.4 86 41.9
Sc21g0002490 Simmondsia chinensis HOM05D004838 ORTHO05D005373 2.1e-08 62.4 88 38.6
A08p20180 Brassica napus HOM05D004838 ORTHO05D005373 2.8e-08 62.0 94 44.7
BraA08t33978Z Brassica rapa HOM05D004838 ORTHO05D005373 2.8e-08 62.0 94 44.7
Gohir.D05G169000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 2.8e-08 62.0 93 36.6
BcaC07g38318 Brassica carinata HOM05D004838 ORTHO05D005373 3.6e-08 61.6 94 44.7
BolC8t48742H Brassica oleracea HOM05D004838 ORTHO05D005373 3.6e-08 61.6 94 44.7
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 3.6e-08 61.6 91 35.2
A03p57930 Brassica napus HOM05D004838 ORTHO05D005373 6.2e-08 60.8 95 41.1
C07p56050 Brassica napus HOM05D004838 ORTHO05D005373 6.2e-08 60.8 98 42.9
BolC7t46082H Brassica oleracea HOM05D004838 ORTHO05D005373 6.2e-08 60.8 98 42.9
Gorai.009G174200 Gossypium raimondii HOM05D004838 ORTHO05D005373 6.2e-08 60.8 102 39.2
Sc21g0002520 Simmondsia chinensis HOM05D004838 ORTHO05D005373 6.2e-08 60.8 88 40.9
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 1.1e-07 60.1 88 42.0
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 3.1e-07 58.5 83 43.4
Gohir.A05G166000 Gossypium hirsutum HOM05D004838 ORTHO05D005373 3.1e-07 58.5 93 35.5
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 5.3e-07 57.8 94 41.5
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 5.3e-07 57.8 93 38.7
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 5.3e-07 57.8 82 43.9
unitig_699.g19386 Utricularia gibba HOM05D004838 ORTHO05D005373 5.3e-07 57.8 99 43.4
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 6.9e-07 57.4 91 35.2
Sc21g0002510 Simmondsia chinensis HOM05D004838 ORTHO05D005373 6.9e-07 57.4 88 40.9
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.2e-06 56.6 90 38.9
HPP92_001805 Vanilla planifolia HOM05D004838 ORTHO05D005373 1.5e-06 56.2 92 39.1
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 2.0e-06 55.8 97 42.3
BraA03t14857Z Brassica rapa HOM05D004838 ORTHO05D005373 2.6e-06 55.5 97 40.2
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 4.4e-06 54.7 91 37.4
Lsat_1_v5_gn_3_40020 Lactuca sativa HOM05D004838 ORTHO05D005373 7.6e-06 53.9 76 42.1
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 9.9e-06 53.5 99 38.4


User provided reference genes

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