Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G000660 Citrullus lanatus HOM05D007422 ORTHO05D009333 2.0e-40 168.7 88 100.0
MELO3C023262.2 Cucumis melo HOM05D007422 ORTHO05D009333 6.0e-37 157.1 85 96.5
RcHm_v2.0_Chr2g0118261 Rosa chinensis HOM05D007422 ORTHO05D009333 5.6e-27 124.0 87 79.3
CiPaw.04G085200 Carya illinoinensis HOM05D007422 ORTHO05D009333 4.8e-26 120.9 88 75.0
Lsat_1_v5_gn_8_142161 Lactuca sativa HOM05D007422 ORTHO05D009333 1.1e-25 119.8 85 74.1
Dinv18494 Davidia involucrata HOM05D007422 ORTHO05D009333 4.0e-25 117.9 86 74.4
MD05G1015900 Malus domestica HOM05D007422 ORTHO05D009333 9.0e-25 116.7 85 70.6
Psat5g063240 Pisum sativum HOM05D007422 ORTHO05D009333 1.2e-24 116.3 85 71.8
vmacro18659 Vaccinium macrocarpon HOM05D007422 ORTHO05D009333 2.0e-24 115.5 87 71.3
Glyma.04G215300 Glycine max HOM05D007422 ORTHO05D009333 2.6e-24 115.2 86 73.3
Duzib264G1170 Durio zibethinus HOM05D007422 ORTHO05D009333 3.4e-24 114.8 85 74.1
HanXRQChr17g0559811 Helianthus annuus HOM05D007422 ORTHO05D009333 4.5e-24 114.4 85 71.8
Solyc03g078350.3 Solanum lycopersicum HOM05D007422 ORTHO05D009333 4.5e-24 114.4 85 70.6
TPR.G18719 Trifolium pratense HOM05D007422 ORTHO05D009333 4.5e-24 114.4 85 72.9
Prupe.6G165000 Prunus persica HOM05D007422 ORTHO05D009333 7.6e-24 113.6 86 73.3
Gohir.D04G029700 Gossypium hirsutum HOM05D007422 ORTHO05D009333 1.3e-23 112.8 85 72.9
Gorai.012G032800 Gossypium raimondii HOM05D007422 ORTHO05D009333 1.3e-23 112.8 85 72.9
Manes.12G151400 Manihot esculenta HOM05D007422 ORTHO05D009333 1.3e-23 112.8 89 70.8
Sopen03g021130 Solanum pennellii HOM05D007422 ORTHO05D009333 1.7e-23 112.5 85 69.4
CAN.G900.53 Capsicum annuum HOM05D007422 ORTHO05D009333 2.2e-23 112.1 85 69.4
COL.COLO4_21895 Corchorus olitorius HOM05D007422 ORTHO05D009333 2.2e-23 112.1 85 70.6
Manes.12G151600 Manihot esculenta HOM05D007422 ORTHO05D009333 2.2e-23 112.1 89 70.8
Thecc.01G123800 Theobroma cacao HOM05D007422 ORTHO05D009333 2.2e-23 112.1 85 74.1
Potri.005G056500 Populus trichocarpa HOM05D007422 ORTHO05D009333 2.9e-23 111.7 89 71.9
Ciclev10026766m.g Citrus clementina HOM05D007422 ORTHO05D009333 3.8e-23 111.3 87 71.3
Cc07_g17580 Coffea canephora HOM05D007422 ORTHO05D009333 4.9e-23 110.9 85 69.4
DCAR_031485 Daucus carota HOM05D007422 ORTHO05D009333 4.9e-23 110.9 82 75.6
Glyma.06G150900 Glycine max HOM05D007422 ORTHO05D009333 4.9e-23 110.9 85 69.4
Nitab4.5_0006443g0040 Nicotiana tabacum HOM05D007422 ORTHO05D009333 4.9e-23 110.9 85 69.4
CANSAT01G0526 Cannabis sativa HOM05D007422 ORTHO05D009333 6.5e-23 110.5 87 72.4
Gohir.A05G386900 Gossypium hirsutum HOM05D007422 ORTHO05D009333 8.4e-23 110.2 85 70.6
Lalb_Chr08g0238531 Lupinus albus HOM05D007422 ORTHO05D009333 8.4e-23 110.2 85 69.4
PGSC0003DMG400018421 Solanum tuberosum HOM05D007422 ORTHO05D009333 8.4e-23 110.2 87 66.7
ECA233G2273 Erigeron canadensis HOM05D002719 ORTHO05D002938 1.1e-22 109.8 85 67.1
Medtr3g095670 Medicago truncatula HOM05D007422 ORTHO05D009333 1.1e-22 109.8 86 73.3
PSO170G3514 Papaver somniferum HOM05D007422 ORTHO05D009333 1.1e-22 109.8 87 67.8
Hund04464 Selenicereus undatus HOM05D007422 ORTHO05D009333 1.1e-22 109.8 89 71.9
Atru.chr4.503 Acer truncatum HOM05D007422 ORTHO05D009333 1.4e-22 109.4 88 69.3
Oeu039761.1 Olea europaea HOM05D007422 ORTHO05D009333 1.4e-22 109.4 85 69.4
VMungo1309G2444 Vigna mungo HOM05D007422 ORTHO05D009333 1.9e-22 109.0 86 67.4
Phvul.009G147900 Phaseolus vulgaris HOM05D007422 ORTHO05D009333 2.5e-22 108.6 86 66.3
arahy.Tifrunner.gnm1.ann1.DL1AJH Arachis hypogaea HOM05D007422 ORTHO05D009333 4.2e-22 107.8 86 69.8
Cpa.g.sc42.105 Carica papaya HOM05D007422 ORTHO05D009333 5.5e-22 107.5 87 67.8
Cfa002851 Carpinus fangiana HOM05D007422 ORTHO05D009333 5.5e-22 107.5 88 68.2
CDE08G0547 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 5.5e-22 107.5 91 64.8
PSO017G6029 Papaver somniferum HOM05D007422 ORTHO05D009333 5.5e-22 107.5 88 67.0
QL06p030244 Quercus lobata HOM05D007422 ORTHO05D009333 5.5e-22 107.5 94 64.9
Sc03g0005110 Simmondsia chinensis HOM05D007422 ORTHO05D009333 7.1e-22 107.1 86 66.3
TAR628G0864 Trochodendron aralioides HOM05D007422 ORTHO05D009333 7.1e-22 107.1 85 68.2
PGR102G2924 Punica granatum HOM05D007422 ORTHO05D009333 9.3e-22 106.7 85 70.6
SGA_v2.0_scaffold137G35131 Striga asiatica HOM05D007422 ORTHO05D009333 9.3e-22 106.7 85 69.4
Lj1g0018544 Lotus japonicus HOM05D007422 ORTHO05D009333 1.2e-21 106.3 85 68.2
TWI31G1366 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 1.2e-21 106.3 85 64.7
arahy.Tifrunner.gnm1.ann1.PIK6SY Arachis hypogaea HOM05D007422 ORTHO05D009333 1.6e-21 105.9 86 68.6
TWI75G1659 Tripterygium wilfordii HOM05D007422 ORTHO05D009333 1.6e-21 105.9 86 66.3
CSS0008685 Camellia sinensis var. sinensis HOM05D007422 ORTHO05D009333 2.1e-21 105.5 88 68.2
CARHR039170 Cardamine hirsuta HOM05D007422 ORTHO05D009333 2.7e-21 105.1 86 64.0
MSTRG.2680 Avicennia marina HOM05D007422 ORTHO05D009333 3.5e-21 104.8 85 68.2
Haze_25151 Corylus avellana HOM05D007422 ORTHO05D009333 6.1e-21 104.0 88 65.9
Migut.H01100 Erythranthe guttata HOM05D007422 ORTHO05D009333 6.1e-21 104.0 85 65.9
Thhalv10011860m.g Eutrema salsugineum HOM05D007422 ORTHO05D009333 6.1e-21 104.0 86 66.3
THA.LOC104821861 Tarenaya hassleriana HOM05D007422 ORTHO05D009333 6.1e-21 104.0 86 64.0
Aqoxy5G02143 Aquilegia oxysepala HOM05D007422 ORTHO05D009333 2.3e-20 102.1 97 62.9
Aa31LG10G5060 Aethionema arabicum HOM05D007422 ORTHO05D009333 3.0e-20 101.7 89 66.3
AT1G49170 Arabidopsis thaliana HOM05D007422 ORTHO05D009333 3.0e-20 101.7 85 65.9
BcaC05g27531 Brassica carinata HOM05D007422 ORTHO05D009333 3.0e-20 101.7 86 61.6
C05p35090 Brassica napus HOM05D007422 ORTHO05D009333 3.0e-20 101.7 86 61.6
BolC5t32228H Brassica oleracea HOM05D007422 ORTHO05D009333 3.0e-20 101.7 86 61.6
AUR62017925 Chenopodium quinoa HOM05D007422 ORTHO05D009333 3.9e-20 101.3 85 63.5
A05p20740 Brassica napus HOM05D007422 ORTHO05D009333 8.7e-20 100.1 86 61.6
BraA05t20982Z Brassica rapa HOM05D007422 ORTHO05D009333 8.7e-20 100.1 86 61.6
Ah.02g122030 Amaranthus hybridus HOM05D007422 ORTHO05D009333 1.1e-19 99.8 85 62.4
AL1G56040 Arabidopsis lyrata HOM05D007422 ORTHO05D009333 1.1e-19 99.8 85 65.9
Carub.0001s3836 Capsella rubella HOM05D007422 ORTHO05D009333 1.1e-19 99.8 86 60.5
Sp1g36060 Schrenkiella parvula HOM05D007422 ORTHO05D009333 1.1e-19 99.8 87 63.2
CDE06G1708 Ceratophyllum demersum HOM05D007422 ORTHO05D009333 1.9e-19 99.0 81 64.2
SEGI_34968 Sequoiadendron giganteum HOM05D007422 ORTHO05D009333 3.3e-19 98.2 90 56.7
Nn1g06132 Nelumbo nucifera HOM05D007422 ORTHO05D009333 4.3e-19 97.8 85 67.1
Peaxi162Scf00583g00227 Petunia axillaris HOM05D007422 ORTHO05D009333 2.2e-18 95.5 85 62.4
Zm00001eb076010 Zea mays HOM05D007422 ORTHO05D009333 2.2e-18 95.5 86 59.3
MBI17_g11164_MAGBIO Magnolia biondii HOM05D007422 ORTHO05D009333 3.7e-18 94.7 61 73.8
Sabra05G0048800 Salix brachista HOM05D007422 ORTHO05D009333 3.7e-18 94.7 97 59.8
unitig_60.g25621 Utricularia gibba HOM05D007422 ORTHO05D009333 1.1e-17 93.2 81 60.5
Ca_16922_v3 Cicer arietinum L. HOM05D007422 ORTHO05D009333 2.4e-17 92.0 86 64.0
ATR0772G041 Amborella trichopoda HOM05D007422 ORTHO05D009333 4.1e-17 91.3 84 57.1
Os04g0686300 Oryza sativa ssp. japonica HOM05D007422 ORTHO05D009333 9.0e-17 90.1 84 54.8
BcaB02g11281 Brassica carinata HOM05D007422 ORTHO05D009333 1.2e-16 89.7 85 58.8
HPP92_006817 Vanilla planifolia HOM05D007422 ORTHO05D009333 2.6e-16 88.6 88 58.0
BcaB02g11285 Brassica carinata HOM05D007422 ORTHO05D009333 1.4e-14 82.8 115 46.1
FvH4_1g23360 Fragaria vesca HOM05D007422 ORTHO05D009333 1.4e-14 82.8 71 70.4
FAN19G2306 Fragaria x ananassa HOM05D007422 ORTHO05D009333 1.4e-14 82.8 71 70.4
Sed0005171 Sechium edule HOM05D007422 ORTHO05D009333 1.9e-14 82.4 65 67.7
AUR62003614 Chenopodium quinoa HOM05D007422 ORTHO05D009333 5.5e-14 80.9 73 58.9
Prupe.6G164500 Prunus persica HOM05D007422 ORTHO05D009333 3.6e-13 78.2 72 62.5
Mapoly0054s0054 Marchantia polymorpha HOM05D007422 ORTHO05D009333 3.3e-11 71.6 57 57.9
Pp3c13_2330 Physcomitrium patens HOM05D007422 ORTHO05D009333 1.1e-09 66.6 71 49.3
CsaV3_2G018110 Cucumis sativus L. HOM05D007422 ORTHO05D009333 1.5e-08 62.8 32 90.6
FAN23G3068 Fragaria x ananassa HOM05D007422 ORTHO05D009333 3.4e-08 61.6 57 68.4
Rhsim08G0003400 Rhododendron simsii HOM05D005663 ORTHO05D007258 2.2e-07 58.9 71 49.3
GSVIVG01026559001 Vitis vinifera HOM05D007422 ORTHO05D009333 1.1e-06 56.6 33 84.8
EL10Ac6g15266 Beta vulgaris HOM05D007422 ORTHO05D009333 9.4e-06 53.5 35 71.4


User provided reference genes

Program Settings