Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 5.5e-37 157.1 80 100.0
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 5.5e-37 157.1 80 100.0
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.3e-35 151.8 77 98.7
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 3.0e-35 151.4 77 97.4
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 5.1e-35 150.6 79 93.7
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 6.7e-35 150.2 79 92.4
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 8.7e-35 149.8 79 92.4
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 1.5e-34 149.1 79 92.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.3e-34 147.5 77 93.5
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 4.3e-34 147.5 79 91.1
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 4.3e-34 147.5 79 91.1
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 4.3e-34 147.5 77 93.5
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 5.7e-34 147.1 77 92.2
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 5.7e-34 147.1 77 93.5
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.7e-34 147.1 77 92.2
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 7.4e-34 146.7 79 91.1
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.4e-34 146.7 79 91.1
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.4e-34 146.7 79 91.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 7.4e-34 146.7 79 89.9
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 9.7e-34 146.4 79 91.1
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 9.7e-34 146.4 79 91.1
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 9.7e-34 146.4 79 91.1
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 9.7e-34 146.4 77 92.2
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 9.7e-34 146.4 77 92.2
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.3e-33 146.0 79 89.9
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 1.3e-33 146.0 77 92.2
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.3e-33 146.0 77 92.2
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.3e-33 146.0 77 92.2
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 89.9
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 88.6
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 89.9
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 89.9
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 89.9
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 88.6
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.2e-33 145.2 79 89.9
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.8e-33 144.8 77 92.2
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.8e-33 144.8 77 89.6
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.7e-33 144.4 79 89.9
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.7e-33 144.4 79 88.6
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 4.8e-33 144.1 77 88.3
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 4.8e-33 144.1 77 89.6
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 4.8e-33 144.1 77 89.6
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.3e-33 143.7 79 88.6
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 6.3e-33 143.7 77 89.6
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 8.2e-33 143.3 77 89.6
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 8.2e-33 143.3 77 90.9
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 8.2e-33 143.3 79 88.6
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 89.6
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 89.6
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 89.6
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 89.6
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 90.9
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 89.6
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.1e-32 142.9 77 89.6
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 1.4e-32 142.5 77 87.0
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.4e-32 142.5 79 87.3
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.8e-32 142.1 77 87.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.4e-32 141.7 77 89.6
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.4e-32 141.7 77 88.3
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.4e-32 141.7 77 89.6
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 3.1e-32 141.4 77 88.3
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 3.1e-32 141.4 77 88.3
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.1e-32 141.4 79 86.1
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 3.1e-32 141.4 77 88.3
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.3e-32 140.6 77 88.3
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 5.3e-32 140.6 75 90.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.3e-32 140.6 77 88.3
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 9.0e-32 139.8 75 92.0
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 9.0e-32 139.8 79 86.1
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.2e-31 139.4 79 84.8
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.2e-31 139.4 79 84.8
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.2e-31 139.4 79 84.8
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.5e-31 139.0 79 84.8
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.0e-31 138.7 77 87.0
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 2.0e-31 138.7 77 85.7
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.0e-31 138.7 79 84.8
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.0e-31 138.7 77 88.3
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 2.6e-31 138.3 77 85.7
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 3.4e-31 137.9 77 83.1
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.4e-31 137.9 77 85.7
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 4.5e-31 137.5 79 82.3
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 5.9e-31 137.1 79 81.0
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 5.9e-31 137.1 79 83.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 5.9e-31 137.1 79 82.3
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 7.7e-31 136.7 75 88.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 7.7e-31 136.7 75 88.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 7.7e-31 136.7 78 87.2
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.0e-30 136.3 79 82.3
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.0e-30 136.3 77 84.4
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 1.3e-30 136.0 75 89.3
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.3e-30 136.0 79 83.5
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 2.9e-30 134.8 77 81.8
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 2.9e-30 134.8 79 82.3
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.9e-30 134.8 77 84.4
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 5.0e-30 134.0 78 83.3
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 5.0e-30 134.0 77 81.8
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 5.0e-30 134.0 77 81.8
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 6.5e-30 133.7 78 83.3
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 6.5e-30 133.7 77 84.4
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 8.5e-30 133.3 77 83.1
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.1e-29 132.9 77 81.8
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.1e-29 132.9 77 83.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.1e-29 132.9 77 81.8
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.4e-29 132.5 73 86.3
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.9e-29 132.1 78 82.1
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 1.9e-29 132.1 78 82.1
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.5e-29 131.7 77 84.4
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 3.2e-29 131.3 75 84.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 4.2e-29 131.0 78 82.1
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.2e-29 131.0 77 80.5
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.6e-28 129.0 75 81.3
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 2.7e-28 128.3 71 87.3
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 4.6e-28 127.5 71 87.3
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 6.1e-28 127.1 76 78.9
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 6.1e-28 127.1 77 76.6
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 1.4e-27 125.9 76 78.9
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.8e-27 125.6 77 80.5
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.8e-27 125.6 77 80.5
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.8e-27 125.6 75 80.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.8e-27 125.6 78 80.8
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.1e-26 122.9 77 72.7
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 7.4e-26 120.2 77 68.8
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.3e-25 119.4 77 68.8
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.3e-25 119.4 76 73.7
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 2.8e-25 118.2 70 78.6
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.1e-24 116.3 67 83.6
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 9.1e-24 113.2 105 60.0
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 3.2e-21 104.8 57 87.7
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 4.2e-21 104.4 56 89.3
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 5.5e-21 104.0 70 62.9
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 2.1e-20 102.1 75 58.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 2.7e-20 101.7 53 90.6
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 7.9e-20 100.1 71 69.0
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 5.1e-19 97.4 52 90.4
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.0e-18 95.5 56 80.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.4e-16 89.4 51 80.4
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 1.6e-15 85.9 84 48.8
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 2.2e-14 82.0 45 84.4
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 5.0e-14 80.9 60 68.3
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 5.5e-13 77.4 69 49.3
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 5.2e-11 70.9 75 56.0
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 5.7e-10 67.4 78 46.2
QL11p051435 Quercus lobata HOM05D004554 ORTHO05D005360 2.0e-07 58.9 29 93.1


User provided reference genes

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