Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G025820 Citrullus lanatus HOM05D003794 ORTHO05D004464 6.8e-116 420.6 204 100.0
Sed0022492 Sechium edule HOM05D003794 ORTHO05D004464 1.2e-72 276.9 176 75.0
CsaV3_6G053030 Cucumis sativus L. HOM05D003794 ORTHO05D004464 2.1e-69 266.2 166 74.1
MELO3C007006.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.5e-62 242.7 155 72.3
Duzib235G0411 Durio zibethinus HOM05D003794 ORTHO05D004464 2.1e-32 143.3 157 41.4
Lj1A1144T44 Lonicera japonica HOM05D003794 ORTHO05D004464 3.6e-32 142.5 174 40.2
QL11p018066 Quercus lobata HOM05D003794 ORTHO05D004464 7.9e-32 141.4 163 42.9
Hma1.2p1_0040F.1_g025090 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 1.4e-31 140.6 155 43.9
Dinv05961 Davidia involucrata HOM05D003794 ORTHO05D004464 2.3e-31 139.8 171 41.5
CANSAT35G2022 Cannabis sativa HOM05D003794 ORTHO05D004464 5.1e-31 138.7 166 44.0
COL.COLO4_30982 Corchorus olitorius HOM05D003794 ORTHO05D004464 6.7e-31 138.3 169 41.4
MD05G1254300 Malus domestica HOM05D003794 ORTHO05D004464 1.5e-30 137.1 163 41.1
Potri.015G120200 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.3e-30 136.0 146 41.1
RcHm_v2.0_Chr5g0019921 Rosa chinensis HOM05D003794 ORTHO05D004464 3.3e-30 136.0 152 44.1
ClCG01G009260 Citrullus lanatus HOM05D003794 ORTHO05D004464 5.7e-30 135.2 167 37.7
ClCG01G009280 Citrullus lanatus HOM05D003794 ORTHO05D004464 5.7e-30 135.2 160 43.8
ClCG01G009290 Citrullus lanatus HOM05D003794 ORTHO05D004464 5.7e-30 135.2 162 42.6
Migut.M01972 Erythranthe guttata HOM05D003794 ORTHO05D004464 5.7e-30 135.2 160 40.0
TWI38G0727 Tripterygium wilfordii HOM05D003794 ORTHO05D004464 5.7e-30 135.2 147 43.5
PGR042G1704 Punica granatum HOM05D003794 ORTHO05D004464 9.7e-30 134.4 148 43.9
RcHm_v2.0_Chr5g0019901 Rosa chinensis HOM05D003794 ORTHO05D004464 9.7e-30 134.4 161 41.0
GSVIVG01012092001 Vitis vinifera HOM05D003794 ORTHO05D004464 9.7e-30 134.4 165 39.4
ClCG01G009250 Citrullus lanatus HOM05D003794 ORTHO05D004464 1.3e-29 134.0 153 41.2
Sed0015410 Sechium edule HOM05D003794 ORTHO05D004464 1.7e-29 133.7 158 39.9
FvH4_3g12160 Fragaria vesca HOM05D003794 ORTHO05D004464 2.2e-29 133.3 151 42.4
Thecc.06G141300 Theobroma cacao HOM05D003794 ORTHO05D004464 2.8e-29 132.9 150 41.3
MELO3C021768.2 Cucumis melo HOM05D003794 ORTHO05D004464 3.7e-29 132.5 152 42.8
THA.LOC104814363 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 3.7e-29 132.5 168 43.5
CsaV3_1G046440 Cucumis sativus L. HOM05D003794 ORTHO05D004464 4.8e-29 132.1 169 37.3
Sed0013970 Sechium edule HOM05D003794 ORTHO05D004464 4.8e-29 132.1 171 38.0
FAN16G1323 Fragaria x ananassa HOM05D003794 ORTHO05D004464 1.1e-28 131.0 162 42.0
Sed0012046 Sechium edule HOM05D003794 ORTHO05D004464 1.1e-28 131.0 158 39.9
GSVIVG01012089001 Vitis vinifera HOM05D003794 ORTHO05D004464 1.1e-28 131.0 166 39.2
CiPaw.09G078700 Carya illinoinensis HOM05D003794 ORTHO05D004464 1.4e-28 130.6 168 37.5
GSVIVG01012087001 Vitis vinifera HOM05D003794 ORTHO05D004464 1.4e-28 130.6 163 39.9
Sabra15G0137100 Salix brachista HOM05D003794 ORTHO05D004464 1.8e-28 130.2 151 43.0
MSTRG.7585 Avicennia marina HOM05D003794 ORTHO05D004464 2.4e-28 129.8 154 38.3
Haze_06027 Corylus avellana HOM05D003794 ORTHO05D004464 3.1e-28 129.4 166 42.2
Haze_06028 Corylus avellana HOM05D003794 ORTHO05D004464 3.1e-28 129.4 166 42.2
Gohir.D06G145100 Gossypium hirsutum HOM05D003794 ORTHO05D004464 3.1e-28 129.4 149 43.0
Gorai.010G168800 Gossypium raimondii HOM05D003794 ORTHO05D004464 3.1e-28 129.4 149 43.0
BcaB07g32782 Brassica carinata HOM05D003794 ORTHO05D004464 4.1e-28 129.0 155 43.2
BraA09t39035Z Brassica rapa HOM05D003794 ORTHO05D004464 5.3e-28 128.6 151 43.0
Ciclev10016974m.g Citrus clementina HOM05D003794 ORTHO05D004464 5.3e-28 128.6 148 43.9
Cfa000722 Carpinus fangiana HOM05D003794 ORTHO05D004464 6.9e-28 128.3 154 40.9
CsaV3_1G046430 Cucumis sativus L. HOM05D003794 ORTHO05D004464 6.9e-28 128.3 154 44.2
AL1G49280 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 9.1e-28 127.9 180 41.1
A09p35040 Brassica napus HOM05D003794 ORTHO05D004464 9.1e-28 127.9 151 42.4
CsaV3_1G046600 Cucumis sativus L. HOM05D003794 ORTHO05D004464 9.1e-28 127.9 173 38.2
Sp1g27020 Schrenkiella parvula HOM05D003794 ORTHO05D004464 9.1e-28 127.9 181 40.9
Thhalv10009870m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 1.2e-27 127.5 176 42.0
BcaC05g24803 Brassica carinata HOM05D003794 ORTHO05D004464 1.5e-27 127.1 158 44.3
MELO3C021763.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.5e-27 127.1 168 35.1
Gohir.A06G140900 Gossypium hirsutum HOM05D003794 ORTHO05D004464 1.5e-27 127.1 150 42.7
ClCG01G009270 Citrullus lanatus HOM05D003794 ORTHO05D004464 2.0e-27 126.7 169 34.9
Gohir.A09G025201 Gossypium hirsutum HOM05D003794 ORTHO05D004464 2.0e-27 126.7 168 41.7
Potri.012G120340 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.0e-27 126.7 152 38.8
SalBow8G2459 Salvia bowleyana HOM05D003794 ORTHO05D004464 2.0e-27 126.7 153 41.8
BcaC05g27150 Brassica carinata HOM05D003794 ORTHO05D004464 2.6e-27 126.3 154 42.9
C05p30370 Brassica napus HOM05D003794 ORTHO05D004464 2.6e-27 126.3 154 42.9
Carub.0001s2960 Capsella rubella HOM05D003794 ORTHO05D004464 2.6e-27 126.3 180 39.4
BcaC05g24807 Brassica carinata HOM05D003794 ORTHO05D004464 3.4e-27 125.9 159 44.0
C05p08300 Brassica napus HOM05D003794 ORTHO05D004464 3.4e-27 125.9 159 44.0
BolC5t29580H Brassica oleracea HOM05D003794 ORTHO05D004464 3.4e-27 125.9 159 44.0
Gorai.006G028700 Gossypium raimondii HOM05D003794 ORTHO05D004464 3.4e-27 125.9 178 39.9
Oeu008720.1 Olea europaea HOM05D003794 ORTHO05D004464 3.4e-27 125.9 156 40.4
Oeu050060.1 Olea europaea HOM05D003794 ORTHO05D004464 5.9e-27 125.2 157 42.0
Atru.chr10.446 Acer truncatum HOM05D003794 ORTHO05D004464 7.7e-27 124.8 155 42.6
SalBow8G4157 Salvia bowleyana HOM05D003794 ORTHO05D004464 7.7e-27 124.8 153 41.2
Carub.0001s0957 Capsella rubella HOM05D003794 ORTHO05D004464 1.0e-26 124.4 159 41.5
FAN25G3487 Fragaria x ananassa HOM05D003794 ORTHO05D004464 1.0e-26 124.4 168 39.9
Prupe.4G110400 Prunus persica HOM05D003794 ORTHO05D004464 1.0e-26 124.4 166 40.4
Duzib160G0344 Durio zibethinus HOM05D003794 ORTHO05D004464 1.3e-26 124.0 171 39.8
A06p06810 Brassica napus HOM05D003794 ORTHO05D004464 1.7e-26 123.6 159 43.4
BraA06t23895Z Brassica rapa HOM05D003794 ORTHO05D004464 1.7e-26 123.6 159 43.4
AT1G10155 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 2.2e-26 123.2 186 39.8
Gohir.D09G024500 Gossypium hirsutum HOM05D003794 ORTHO05D004464 2.2e-26 123.2 167 41.3
Cc09_g06260 Coffea canephora HOM05D003794 ORTHO05D004464 2.9e-26 122.9 162 37.7
Sed0017866 Sechium edule HOM05D003794 ORTHO05D004464 2.9e-26 122.9 168 37.5
PSO675G9055 Papaver somniferum HOM05D003794 ORTHO05D004464 3.8e-26 122.5 157 40.1
arahy.Tifrunner.gnm1.ann1.D9MA0I Arachis hypogaea HOM05D003794 ORTHO05D004464 5.0e-26 122.1 151 40.4
Thecc.06G140300 Theobroma cacao HOM05D003794 ORTHO05D004464 5.0e-26 122.1 152 40.8
Sp1g08790 Schrenkiella parvula HOM05D003794 ORTHO05D004464 6.5e-26 121.7 159 42.8
Cc09_g06270 Coffea canephora HOM05D003794 ORTHO05D004464 8.5e-26 121.3 177 36.7
Potri.012G120160 Populus trichocarpa HOM05D003794 ORTHO05D004464 8.5e-26 121.3 164 39.6
RcHm_v2.0_Chr5g0019931 Rosa chinensis HOM05D003794 ORTHO05D004464 8.5e-26 121.3 175 37.7
Thhalv10008847m.g Eutrema salsugineum HOM05D003794 ORTHO05D004464 1.1e-25 120.9 159 42.1
Lalb_Chr11g0072291 Lupinus albus HOM05D003794 ORTHO05D004464 1.1e-25 120.9 148 42.6
MELO3C021767.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.9e-25 120.2 173 38.7
CsaV3_1G046610 Cucumis sativus L. HOM05D003794 ORTHO05D004464 1.9e-25 120.2 168 38.1
AL1G20850 Arabidopsis lyrata HOM05D003794 ORTHO05D004464 2.5e-25 119.8 187 37.4
arahy.Tifrunner.gnm1.ann1.I4JYF5 Arachis hypogaea HOM05D003794 ORTHO05D004464 2.5e-25 119.8 151 40.4
Sed0014796 Sechium edule HOM05D003794 ORTHO05D004464 2.5e-25 119.8 156 38.5
Aa31LG2G15150 Aethionema arabicum HOM05D003794 ORTHO05D004464 3.2e-25 119.4 177 39.5
Potri.012G120280 Populus trichocarpa HOM05D003794 ORTHO05D004464 4.2e-25 119.0 151 40.4
SalBow8G0239 Salvia bowleyana HOM05D003794 ORTHO05D004464 5.5e-25 118.6 152 38.8
SalBow8G3375 Salvia bowleyana HOM05D003794 ORTHO05D004464 5.5e-25 118.6 152 38.8
PSO675G7591 Papaver somniferum HOM05D003794 ORTHO05D004464 7.2e-25 118.2 153 38.6
Sabra15G0137000 Salix brachista HOM05D003794 ORTHO05D004464 7.2e-25 118.2 160 38.8
CSS0016108 Camellia sinensis var. sinensis HOM05D003794 ORTHO05D004464 9.4e-25 117.9 148 41.2
Gohir.D03G117566 Gossypium hirsutum HOM05D003794 ORTHO05D004464 9.4e-25 117.9 152 42.1
AT1G31200 Arabidopsis thaliana HOM05D003794 ORTHO05D004464 2.7e-24 116.3 130 45.4
Cpa.g.sc135.26 Carica papaya HOM05D003794 ORTHO05D004464 6.1e-24 115.2 159 40.3
CARHR030680 Cardamine hirsuta HOM05D003794 ORTHO05D004464 1.0e-23 114.4 130 45.4
Aa31LG9G16050 Aethionema arabicum HOM05D003794 ORTHO05D004464 1.4e-23 114.0 187 36.9
BolC5t31776H Brassica oleracea HOM05D003794 ORTHO05D004464 1.4e-23 114.0 145 41.4
Glyma.06G221100 Glycine max HOM05D003794 ORTHO05D004464 3.0e-23 112.8 153 39.9
VMungo1309G0946 Vigna mungo HOM05D003794 ORTHO05D004464 8.8e-23 111.3 167 37.1
Medtr0026s0010 Medicago truncatula HOM05D003794 ORTHO05D004464 1.1e-22 110.9 164 39.0
Aqoxy4G00782 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 2.0e-22 110.2 157 39.5
Manes.16G059600 Manihot esculenta HOM05D003794 ORTHO05D004464 2.0e-22 110.2 173 35.8
Migut.E01640 Erythranthe guttata HOM05D003794 ORTHO05D004464 2.6e-22 109.8 176 33.0
TPR.G9537 Trifolium pratense HOM05D003794 ORTHO05D004464 2.6e-22 109.8 167 37.1
Potri.015G120100 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.3e-22 109.4 163 36.8
MBI18_g03837_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 4.4e-22 109.0 160 40.0
CAN.G519.2 Capsicum annuum HOM05D003794 ORTHO05D004464 5.7e-22 108.6 148 37.8
Migut.E00890 Erythranthe guttata HOM05D003794 ORTHO05D004464 7.4e-22 108.2 175 33.1
Sabra06G0010100 Salix brachista HOM05D003794 ORTHO05D004464 7.4e-22 108.2 158 38.6
Actinidia33654 Actinidia chinensis HOM05D003794 ORTHO05D004464 1.3e-21 107.5 151 37.1
Actinidia37906 Actinidia chinensis HOM05D003794 ORTHO05D004464 1.3e-21 107.5 148 36.5
Dinv05549 Davidia involucrata HOM05D003794 ORTHO05D004464 1.7e-21 107.1 151 40.4
Lj6g0000845 Lotus japonicus HOM05D003794 ORTHO05D004464 1.7e-21 107.1 165 36.4
Aqoxy4G00780 Aquilegia oxysepala HOM05D003794 ORTHO05D004464 2.2e-21 106.7 167 38.3
CAN.G39.22 Capsicum annuum HOM05D003794 ORTHO05D004464 2.8e-21 106.3 148 35.8
MD10G1234400 Malus domestica HOM05D003794 ORTHO05D004464 2.8e-21 106.3 152 37.5
CAN.G519.1 Capsicum annuum HOM05D003794 ORTHO05D004464 8.2e-21 104.8 150 38.7
THA.LOC104798619 Tarenaya hassleriana HOM05D003794 ORTHO05D004464 8.2e-21 104.8 142 41.5
Sabra12G0088800 Salix brachista HOM05D003794 ORTHO05D004464 1.4e-20 104.0 134 41.0
Potri.015G118900 Populus trichocarpa HOM05D003794 ORTHO05D004464 4.1e-20 102.4 190 34.7
Sopen02g010020 Solanum pennellii HOM05D003794 ORTHO05D004464 4.1e-20 102.4 151 35.8
Cpa.g.sc135.30 Carica papaya HOM05D003794 ORTHO05D004464 5.3e-20 102.1 165 36.4
Nitab4.5_0000767g0010 Nicotiana tabacum HOM05D003794 ORTHO05D004464 5.3e-20 102.1 165 38.2
Peaxi162Scf00367g00015 Petunia axillaris HOM05D003794 ORTHO05D004464 5.3e-20 102.1 154 34.4
Hma1.2p1_0502F.1_g167680 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 1.6e-19 100.5 122 41.0
Solyc02g031740.3 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.6e-19 100.5 152 35.5
Phvul.009G205600 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 2.0e-19 100.1 169 35.5
PGSC0003DMG400010357 Solanum tuberosum HOM05D003794 ORTHO05D004464 2.0e-19 100.1 150 38.0
Phvul.009G205500 Phaseolus vulgaris HOM05D003794 ORTHO05D004464 2.6e-19 99.8 156 37.2
Nitab4.5_0006444g0020 Nicotiana tabacum HOM05D003794 ORTHO05D004464 3.5e-19 99.4 152 36.2
Potri.015G120000 Populus trichocarpa HOM05D003794 ORTHO05D004464 3.5e-19 99.4 212 32.5
Psat1g023680 Pisum sativum HOM05D003794 ORTHO05D004464 4.5e-19 99.0 116 38.8
Hma1.2p1_2069F.1_g313120 Hydrangea macrophylla HOM05D003794 ORTHO05D004464 5.9e-19 98.6 122 39.3
Solyc02g069065.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.0e-18 97.8 150 35.3
Sopen02g018150 Solanum pennellii HOM05D003794 ORTHO05D004464 1.3e-18 97.4 142 38.7
Solyc02g069057.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 1.7e-18 97.1 142 38.0
Potri.015G118800 Populus trichocarpa HOM05D003794 ORTHO05D004464 2.2e-18 96.7 199 31.7
Sopen02g018160 Solanum pennellii HOM05D003794 ORTHO05D004464 2.2e-18 96.7 142 36.6
Solyc02g069055.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 3.8e-18 95.9 142 36.6
Manes.16G059700 Manihot esculenta HOM05D003794 ORTHO05D004464 1.9e-17 93.6 146 34.9
Sabra12G0088700 Salix brachista HOM05D003794 ORTHO05D004464 2.5e-17 93.2 108 39.8
Sabra12G0091800 Salix brachista HOM05D003794 ORTHO05D004464 4.2e-17 92.4 107 40.2
Solyc02g069053.1 Solanum lycopersicum HOM05D003794 ORTHO05D004464 5.5e-17 92.0 142 38.0
SalBow7G3321 Salvia bowleyana HOM05D003794 ORTHO05D004464 1.2e-16 90.9 94 43.6
Dinv13778 Davidia involucrata HOM05D003794 ORTHO05D004464 4.7e-16 89.0 131 42.0
MBI18_g20612_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D004464 3.0e-15 86.3 162 34.6
MBI15_g34447_MAGBIO Magnolia biondii HOM05D003794 ORTHO05D000638 3.7e-13 79.3 126 35.7
Nitab4.5_0003773g0100 Nicotiana tabacum HOM05D003794 ORTHO05D004464 6.3e-13 78.6 96 41.7
Potri.015G118850 Populus trichocarpa HOM05D003794 ORTHO05D004464 6.3e-13 78.6 104 39.4
Solyc02g069060.4 Solanum lycopersicum HOM05D003794 ORTHO05D004464 6.3e-13 78.6 130 36.9
ATR0763G193 Amborella trichopoda HOM05D003794 ORTHO05D004464 8.2e-13 78.2 164 29.9
ATR0763G032 Amborella trichopoda HOM05D003794 ORTHO05D004464 3.5e-11 72.8 157 29.3
Potri.015G119100 Populus trichocarpa HOM05D003794 ORTHO05D004464 7.7e-11 71.6 120 32.5
MD10G1234200 Malus domestica HOM05D003794 ORTHO05D004464 1.0e-10 71.2 108 34.3
MELO3C001310.2 Cucumis melo HOM05D003794 ORTHO05D004464 2.9e-10 69.7 76 43.4
PGSC0003DMG400010359 Solanum tuberosum HOM05D003794 ORTHO05D004464 3.6e-08 62.8 82 40.2
SMO234G0084 Selaginella moellendorffii HOM05D000950 ORTHO05D000146 1.4e-07 60.8 143 28.0
MELO3C027491.2 Cucumis melo HOM05D003794 ORTHO05D004464 1.8e-07 60.5 69 40.6
Dinv41335 Davidia involucrata HOM05D003794 ORTHO05D004464 3.0e-07 59.7 97 33.0
MELO3C027674.2 Cucumis melo HOM05D003794 ORTHO05D004464 4.0e-07 59.3 51 49.0
ATR0763G201 Amborella trichopoda HOM05D003794 ORTHO05D000146 9.8e-06 54.7 148 25.7


User provided reference genes

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