Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 3.9e-187 657.9 316 100.0
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 6.2e-108 394.8 321 65.4
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.4e-107 393.7 321 65.1
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.2e-104 382.5 340 59.7
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.6e-84 315.8 322 52.8
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.1e-83 314.3 322 52.8
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 1.5e-82 310.5 323 52.0
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 2.9e-81 306.2 329 51.1
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 3.8e-81 305.8 322 51.2
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 3.8e-81 305.8 325 52.3
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 4.9e-81 305.4 322 51.2
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 2.4e-80 303.1 323 51.1
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.2e-80 302.8 326 50.3
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.2e-80 302.8 322 50.3
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 4.2e-80 302.4 323 51.7
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.7e-79 299.7 325 50.5
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 2.7e-79 299.7 322 50.0
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 6.0e-79 298.5 325 50.2
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 7.8e-79 298.1 322 49.1
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.7e-78 297.0 323 49.8
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 3.0e-78 296.2 323 51.1
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 3.9e-78 295.8 323 49.2
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 8.7e-78 294.7 325 49.2
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 8.7e-78 294.7 325 49.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.9e-77 293.5 324 50.6
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.5e-77 293.1 325 49.8
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 3.3e-77 292.7 322 49.4
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 4.3e-77 292.4 325 50.5
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 5.6e-77 292.0 322 48.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 7.3e-77 291.6 325 50.2
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.6e-76 290.4 334 49.4
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.8e-76 289.7 327 49.2
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 4.8e-76 288.9 324 49.7
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 8.1e-76 288.1 325 49.8
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 2.4e-75 286.6 320 50.3
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.0e-75 285.8 347 46.7
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.2e-74 284.3 323 49.5
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 4.5e-74 282.3 322 47.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 7.6e-74 281.6 321 48.0
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.3e-73 280.8 342 46.8
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.7e-73 280.4 321 47.7
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 2.2e-73 280.0 325 47.4
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 2.9e-73 279.6 322 48.8
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 3.8e-73 279.3 322 48.8
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 8.4e-73 278.1 325 48.0
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 8.4e-73 278.1 367 45.8
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 8.4e-73 278.1 325 48.6
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.9e-72 276.9 323 47.4
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 1.9e-72 276.9 321 47.0
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.4e-72 276.6 321 47.0
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.2e-72 276.2 313 48.6
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 4.2e-72 275.8 230 60.4
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 7.1e-72 275.0 368 43.2
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 9.3e-72 274.6 235 60.0
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 9.3e-72 274.6 230 59.6
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.2e-71 274.2 327 48.9
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.2e-71 274.2 322 47.2
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.2e-71 274.2 325 47.4
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.2e-71 274.2 305 50.2
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 2.1e-71 273.5 325 47.7
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 3.5e-71 272.7 324 48.5
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 3.5e-71 272.7 326 48.2
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 4.6e-71 272.3 327 48.0
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 4.6e-71 272.3 327 48.0
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 4.6e-71 272.3 325 46.8
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 6.0e-71 271.9 232 60.3
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.3e-70 270.8 327 46.8
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 1.3e-70 270.8 328 46.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 1.3e-70 270.8 328 46.6
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 1.8e-70 270.4 326 47.5
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 1.8e-70 270.4 327 47.7
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 1.8e-70 270.4 327 47.7
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.8e-70 270.4 324 47.2
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.9e-70 269.2 326 47.2
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.9e-70 269.2 328 46.6
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 3.9e-70 269.2 328 46.6
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 3.9e-70 269.2 321 46.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 6.7e-70 268.5 326 46.9
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 8.7e-70 268.1 326 46.9
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 8.7e-70 268.1 328 46.3
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 1.1e-69 267.7 318 46.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-68 263.8 422 39.6
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 3.7e-68 262.7 323 44.9
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 4.8e-68 262.3 326 46.6
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 4.8e-68 262.3 326 46.6
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 4.8e-68 262.3 326 46.6
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 6.2e-68 261.9 322 46.0
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.3e-65 254.2 234 56.8
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.2e-64 249.2 415 39.5
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 5.5e-64 248.8 233 55.4
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 6.0e-63 245.4 322 41.6
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.6e-60 237.3 282 49.6
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.6e-60 237.3 326 42.3
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 8.2e-60 235.0 255 50.6
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 1.4e-59 234.2 327 39.8
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.9e-59 231.9 323 42.1
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 5.0e-57 225.7 310 42.6
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 6.5e-57 225.3 323 40.2
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-56 223.8 323 40.6
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 3.2e-56 223.0 322 42.9
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 6.1e-55 218.8 356 37.9
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 4.3e-53 212.6 328 39.9
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.2e-52 210.3 283 45.6
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 5.0e-49 199.1 323 36.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 2.0e-45 187.2 244 44.7
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 2.5e-45 186.8 240 42.5
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.1e-43 179.9 319 36.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 2.2e-41 173.7 217 46.1
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 2.7e-39 166.8 313 33.5
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.9e-38 162.9 124 62.9
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 3.9e-38 162.9 124 62.9
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 4.8e-36 156.0 274 33.9
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 3.1e-35 153.3 350 30.9
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.6e-31 139.8 87 71.3
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.5e-29 134.4 87 67.8
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.0e-29 134.0 126 55.6
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 4.4e-29 132.9 141 48.9
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 7.4e-29 132.1 229 34.5
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.2e-26 124.8 89 67.4
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 1.6e-26 124.4 92 63.0
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 7.7e-26 122.1 228 33.8
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.7e-25 120.9 86 66.3
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 8.5e-25 118.6 92 62.0
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 2.7e-23 113.6 74 68.9
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 1.2e-21 108.2 87 60.9
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.8e-19 100.9 68 64.7
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 3.1e-19 100.1 64 70.3
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 5.4e-19 99.4 49 81.6
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 5.9e-18 95.9 84 48.8
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 2.2e-17 94.0 126 38.1
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 3.4e-13 80.1 39 82.1
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 5.7e-13 79.3 39 79.5
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 4.9e-12 76.3 34 88.2
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 8.3e-12 75.5 39 74.4
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.6e-10 71.2 75 54.7
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 5.6e-08 62.8 33 72.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 5.6e-08 62.8 33 72.7
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 5.6e-08 62.8 53 50.9


User provided reference genes

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