Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 4.7e-259 898.3 869 100.0
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 9.0e-202 708.0 837 91.9
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 7.2e-199 698.4 838 91.2
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 3.2e-175 619.8 839 87.6
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 6.3e-86 323.2 804 73.8
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 6.1e-81 306.6 679 82.3
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 4.8e-78 297.0 667 83.2
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 3.1e-77 294.3 763 76.3
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 3.1e-77 294.3 829 67.7
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.1e-74 285.8 807 73.4
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.1e-74 285.8 799 72.5
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 1.4e-74 285.4 802 72.8
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 7.2e-74 283.1 669 82.7
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 9.4e-74 282.7 668 82.3
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 3.0e-72 277.7 840 70.7
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.4e-69 268.9 805 71.8
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 4.1e-69 267.3 654 82.9
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 2.0e-68 265.0 804 71.1
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.0e-68 265.0 681 79.6
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 3.5e-68 264.2 285 76.1
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 7.7e-68 263.1 744 66.7
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 1.3e-67 262.3 783 71.6
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 2.9e-67 261.2 281 65.5
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 2.9e-67 261.2 691 79.0
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 2.5e-66 258.1 671 76.0
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 3.2e-66 257.7 674 80.7
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.2e-66 257.3 804 70.1
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 1.6e-65 255.4 661 81.2
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 8.0e-65 253.1 820 69.5
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.8e-64 251.9 661 81.1
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.3e-64 251.5 683 78.8
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 2.6e-63 248.1 804 70.1
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 5.7e-63 246.9 301 66.8
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 5.7e-63 246.9 759 74.0
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 7.5e-63 246.5 681 77.8
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 4.8e-62 243.8 690 77.4
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 1.1e-61 242.7 690 78.3
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.4e-61 241.5 675 78.7
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 5.3e-61 240.4 685 77.7
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 2.0e-60 238.4 827 69.6
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 3.5e-60 237.7 757 73.1
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 5.9e-60 236.9 797 70.3
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.0e-59 236.1 673 78.9
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.3e-59 235.7 635 83.3
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 2.5e-58 231.5 731 65.5
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 3.2e-58 231.1 411 55.7
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 4.2e-58 230.7 756 71.8
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 1.2e-57 229.2 244 54.5
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 1.6e-57 228.8 690 77.7
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 2.7e-57 228.0 809 69.6
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 3.0e-56 224.6 741 72.6
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 3.0e-56 224.6 174 63.8
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 5.2e-56 223.8 180 58.9
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 5.2e-56 223.8 409 53.3
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.2e-55 222.6 187 58.8
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 9.8e-55 219.5 746 71.6
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 2.8e-54 218.0 801 68.7
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 3.7e-54 217.6 699 75.7
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 1.1e-53 216.1 811 64.7
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.8e-53 215.3 180 57.8
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 1.8e-53 215.3 666 78.8
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 5.4e-53 213.8 218 53.7
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 3.5e-52 211.1 681 76.5
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 1.0e-51 209.5 192 56.2
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 1.7e-51 208.8 276 48.6
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 5.0e-51 207.2 678 72.4
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.5e-50 205.7 199 54.8
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 1.9e-50 205.3 231 51.9
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 2.5e-50 204.9 637 80.7
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 4.2e-50 204.1 170 61.2
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 7.2e-50 203.4 183 57.4
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 1.6e-49 202.2 230 51.7
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.1e-49 201.8 329 57.1
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 2.1e-49 201.8 682 76.4
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 4.7e-49 200.7 670 73.4
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 8.0e-49 199.9 145 66.9
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 2.3e-48 198.4 228 51.8
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.3e-48 198.4 668 77.5
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 5.2e-48 197.2 670 73.6
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 1.2e-47 196.1 795 66.4
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 4.4e-47 194.1 724 71.0
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 8.3e-46 189.9 789 66.2
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 1.1e-45 189.5 280 65.0
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 1.1e-45 189.5 286 66.1
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 2.4e-45 188.3 283 46.6
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 3.1e-45 188.0 153 61.4
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 5.4e-45 187.2 679 63.2
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 5.4e-45 187.2 132 68.2
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 2.0e-44 185.3 234 46.6
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 3.5e-44 184.5 129 69.8
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 3.5e-44 184.5 129 69.8
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 3.5e-44 184.5 129 69.8
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 7.7e-44 183.3 279 63.1
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 1.3e-43 182.6 678 72.7
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 3.8e-43 181.0 132 67.4
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 3.8e-43 181.0 264 47.7
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 3.8e-43 181.0 127 66.9
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 6.6e-43 180.3 675 60.0
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 5.6e-42 177.2 150 58.0
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 2.8e-41 174.9 119 68.9
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.4e-40 172.6 254 69.3
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 2.3e-40 171.8 660 76.7
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 2.3e-40 171.8 139 59.7
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.2e-39 169.5 218 45.0
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 3.4e-39 167.9 312 57.1
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 3.4e-39 167.9 167 49.7
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 3.7e-38 164.5 119 65.5
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 1.8e-37 162.2 178 48.9
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.5e-34 152.5 104 70.2
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 1.2e-33 149.4 114 63.2
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 2.8e-33 148.3 101 70.3
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 1.2e-31 142.9 107 66.4
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 2.9e-30 138.3 101 65.3
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 2.9e-30 138.3 133 54.9
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 6.4e-30 137.1 111 61.3
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 1.7e-27 129.0 107 58.9
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 3.9e-27 127.9 77 77.9
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.1e-26 126.3 108 52.8
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 3.6e-25 121.3 107 57.0
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 1.4e-24 119.4 82 65.9
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 3.2e-21 108.2 80 68.8
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 3.0e-19 101.7 82 59.8
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.9e-18 99.0 83 59.0
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 2.5e-18 98.6 95 51.6
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 1.1e-16 93.2 58 72.4
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 4.9e-14 84.3 68 58.8
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 1.6e-12 79.3 50 78.0
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 2.1e-12 79.0 59 62.7
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 4.6e-12 77.8 59 61.0
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 5.6e-10 70.9 132 36.4
SEGI_16657 Sequoiadendron giganteum HOM05D005337 ORTHO05D023551 1.2e-09 69.7 166 26.5
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 1.6e-09 69.3 131 28.2
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 2.8e-09 68.6 50 66.0
CDE07G1133 Ceratophyllum demersum HOM05D006596 ORTHO05D008497 6.2e-09 67.4 141 29.1
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 1.8e-08 65.9 132 29.5
PSO339G1208 Papaver somniferum HOM05D005973 ORTHO05D007285 4.0e-08 64.7 147 27.9
AagrBONN_evm.TU.Sc2ySwM_344.4462 Anthoceros agrestis HOM05D004079 ORTHO05D000355 5.2e-08 64.3 124 27.4
TAR374G0752 Trochodendron aralioides HOM05D000424 ORTHO05D000355 5.2e-08 64.3 164 29.3
PSO384G2338 Papaver somniferum HOM05D005973 ORTHO05D007285 6.9e-08 63.9 147 27.9
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 1.2e-07 63.2 152 28.3
BcaB03g13836 Brassica carinata HOM05D005337 ORTHO05D006567 1.2e-07 63.2 116 41.4
Gorai.005G002200 Gossypium raimondii HOM05D006740 ORTHO05D008571 2.6e-07 62.0 158 24.1
Duzib151G0326 Durio zibethinus HOM05D006740 ORTHO05D008571 3.4e-07 61.6 142 23.9
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 4.4e-07 61.2 147 27.9
Ciclev10013605m.g Citrus clementina HOM05D006895 ORTHO05D008605 7.6e-07 60.5 130 31.5
DCAR_025034 Daucus carota HOM05D005973 ORTHO05D007285 7.6e-07 60.5 152 25.7
Nn1g00512 Nelumbo nucifera HOM05D006740 ORTHO05D008571 7.6e-07 60.5 142 28.2
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 9.9e-07 60.1 142 29.6
TAR206G0004 Trochodendron aralioides HOM05D000424 ORTHO05D000355 1.3e-06 59.7 145 30.3
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 1.7e-06 59.3 176 25.6
Actinidia07466 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.2e-06 58.9 45 60.0
Haze_20748 Corylus avellana HOM05D006895 ORTHO05D008605 2.9e-06 58.5 120 32.5
CsaV3_6G052020 Cucumis sativus L. HOM05D005337 ORTHO05D006567 2.9e-06 58.5 32 75.0
Dinv05038 Davidia involucrata HOM05D005973 ORTHO05D007285 2.9e-06 58.5 147 27.9
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 2.9e-06 58.5 152 25.7
Oeu025379.3 Olea europaea HOM05D006749 ORTHO05D008352 2.9e-06 58.5 139 24.5
Cfa017422 Carpinus fangiana HOM05D006895 ORTHO05D008605 3.8e-06 58.2 120 31.7
Rhsim05G0126600 Rhododendron simsii HOM05D005973 ORTHO05D007285 3.8e-06 58.2 164 28.7
Rhsim11G0102200 Rhododendron simsii HOM05D007830 ORTHO05D009947 3.8e-06 58.2 129 27.1
SHI20145 Sapria himalayana HOM05D000424 ORTHO05D002854 3.8e-06 58.2 144 29.2
THA.LOC104826027 Tarenaya hassleriana HOM05D007208 ORTHO05D009090 3.8e-06 58.2 168 26.8
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 4.9e-06 57.8 133 25.6
ATR0697G176 Amborella trichopoda HOM05D000104 ORTHO05D026583 6.4e-06 57.4 148 26.4
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 6.4e-06 57.4 196 27.0
PSO761G0258 Papaver somniferum HOM05D007830 ORTHO05D009947 6.4e-06 57.4 128 27.3


User provided reference genes

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