Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.9e-186 655.6 315 100.0
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 2.4e-152 542.3 324 82.4
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 1.7e-150 536.2 320 81.6
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.5e-143 513.1 316 78.5
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 1.0e-126 457.2 321 67.9
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 5.0e-126 454.9 323 67.5
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 2.0e-122 443.0 319 66.1
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.7e-121 439.9 316 68.0
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.8e-121 439.1 317 65.3
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 6.3e-121 438.0 317 65.3
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 8.3e-121 437.6 317 65.9
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.8e-120 436.4 315 67.3
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.8e-120 436.4 315 64.8
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 4.1e-120 435.3 315 67.3
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 2.7e-119 432.6 315 65.4
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 3.5e-119 432.2 319 64.6
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 5.9e-119 431.4 313 67.1
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 5.9e-119 431.4 319 64.9
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 7.7e-119 431.0 354 60.7
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 7.7e-119 431.0 315 65.1
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 2.3e-118 429.5 315 64.8
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 2.9e-118 429.1 320 64.1
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.8e-118 428.7 315 67.0
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 6.5e-118 427.9 316 67.1
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.9e-117 426.4 316 66.5
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 1.8e-115 419.9 318 62.6
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.5e-114 416.8 319 62.7
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 3.4e-114 415.6 335 60.9
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.8e-114 414.1 315 61.6
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 2.2e-113 412.9 319 62.1
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 4.9e-113 411.8 318 63.5
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 6.3e-113 411.4 319 61.4
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 8.3e-113 411.0 322 63.0
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.4e-112 410.2 315 61.3
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 3.1e-112 409.1 320 62.5
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 5.4e-112 408.3 318 61.9
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 9.2e-112 407.5 317 61.8
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 2.7e-111 406.0 319 61.4
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 4.5e-111 405.2 318 62.6
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 4.5e-111 405.2 321 59.8
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 7.8e-111 404.4 320 60.9
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 3.8e-110 402.1 315 62.2
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 5.0e-110 401.7 320 62.8
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 8.6e-110 401.0 320 59.7
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.1e-109 400.6 320 63.4
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.6e-108 396.7 315 59.7
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 2.8e-108 396.0 315 62.2
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 3.6e-108 395.6 315 62.5
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 4.7e-108 395.2 319 59.9
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 6.1e-108 394.8 315 63.2
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 6.8e-107 391.3 319 58.6
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 6.8e-107 391.3 315 61.9
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 1.5e-106 390.2 315 59.0
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 2.6e-106 389.4 271 70.1
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.3e-105 387.1 317 59.6
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.7e-105 386.7 315 61.0
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 2.2e-105 386.3 317 59.9
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 3.7e-105 385.6 317 60.3
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 6.4e-105 384.8 315 60.0
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 2.4e-104 382.9 318 60.1
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 7.0e-104 381.3 315 60.3
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 1.2e-103 380.6 320 59.1
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 3.5e-103 379.0 315 60.6
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.0e-102 377.5 315 60.6
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 1.0e-102 377.5 317 59.0
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 1.7e-102 376.7 315 60.0
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 2.3e-102 376.3 315 58.4
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 5.0e-102 375.2 315 60.0
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 1.1e-101 374.0 315 58.4
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 1.1e-101 374.0 365 51.5
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 1.9e-101 373.2 291 60.8
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 3.3e-101 372.5 315 59.4
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 4.3e-101 372.1 318 59.4
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 8.0e-100 367.9 324 58.0
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 1.8e-99 366.7 325 55.1
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 3.1e-99 365.9 323 58.5
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 4.0e-99 365.5 315 58.7
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 1.5e-98 363.6 316 55.4
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 2.0e-98 363.2 315 59.0
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 5.8e-98 361.7 237 74.3
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 7.5e-98 361.3 324 57.4
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 2.4e-96 356.3 252 69.0
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.0e-95 351.7 315 57.1
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 2.5e-93 346.3 332 54.2
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 8.1e-92 341.3 224 70.1
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 2.0e-90 336.7 330 55.2
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 3.4e-90 335.9 236 69.5
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.4e-90 335.9 320 55.0
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 7.5e-90 334.7 327 53.2
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 3.7e-89 332.4 236 67.8
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 5.1e-86 322.0 319 51.7
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 6.6e-86 321.6 315 54.6
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.4e-83 313.2 325 51.4
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 1.3e-78 297.4 245 58.8
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 7.3e-77 291.6 315 49.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 1.3e-73 280.8 248 58.5
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 2.2e-73 280.0 324 47.5
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.9e-73 279.6 319 45.8
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 2.4e-72 276.6 305 47.9
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 1.2e-71 274.2 239 57.3
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 6.0e-71 271.9 319 47.0
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 1.3e-70 270.8 305 46.9
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 1.7e-70 270.4 211 61.1
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 6.6e-70 268.5 174 70.1
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 2.5e-69 266.5 275 51.6
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 2.8e-68 263.1 250 51.6
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 5.4e-64 248.8 177 69.5
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 2.0e-58 230.3 156 68.6
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 2.2e-57 226.9 225 48.4
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 1.4e-56 224.2 174 64.9
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 1.9e-56 223.8 174 64.9
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 4.5e-50 202.6 127 73.2
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.5e-48 196.8 318 37.1
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.2e-47 194.5 144 60.4
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.5e-45 186.8 223 44.8
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 5.9e-42 175.6 143 62.2
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 7.6e-42 175.3 411 30.9
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 2.5e-40 170.2 239 41.4
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 5.1e-38 162.5 146 52.7
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 1.9e-37 160.6 319 34.5
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 4.3e-37 159.5 236 39.4
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 8.5e-33 145.2 115 60.9
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.4e-29 132.9 170 44.7
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 2.2e-20 104.0 74 68.9
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 8.5e-17 92.0 67 59.7
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 8.8e-14 82.0 51 72.5
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 2.0e-13 80.9 53 66.0
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 2.0e-13 80.9 55 60.0
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 4.5e-10 69.7 45 64.4
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 8.5e-09 65.5 31 90.3
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 9.4e-08 62.0 36 72.2
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 1.2e-07 61.6 31 87.1
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.0e-06 58.5 52 48.1
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 2.3e-06 57.4 42 61.9


User provided reference genes

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