Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 4.1e-37 157.5 78 100.0
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 2.5e-34 148.3 80 95.0
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 1.5e-31 139.0 80 86.2
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 2.0e-31 138.7 80 86.2
Sed0023541 Sechium edule HOM05D006911 ORTHO05D006663 3.7e-22 107.8 82 70.7
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 3.5e-12 74.7 70 58.6
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.6e-12 74.3 72 61.1
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.0e-11 73.2 79 49.4
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 1.1e-10 69.7 73 49.3
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 1.5e-10 69.3 69 55.1
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.6e-09 65.9 58 56.9
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 3.6e-09 64.7 62 56.5
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 6.2e-09 63.9 74 47.3
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 5.2e-08 60.8 69 50.7
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 6.8e-08 60.5 67 47.8
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-07 59.7 78 46.2
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 1.2e-07 59.7 68 47.1
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.5e-07 59.3 78 46.2
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.5e-07 59.3 78 46.2
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 2.0e-07 58.9 72 48.6
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.6e-07 58.5 73 46.6
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.6e-07 58.5 76 44.7
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 2.6e-07 58.5 41 61.0
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 3.4e-07 58.2 70 52.9
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 3.4e-07 58.2 70 54.3
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 3.4e-07 58.2 68 48.5
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 4.4e-07 57.8 72 52.8
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 4.4e-07 57.8 72 52.8
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.8e-07 57.4 73 45.2
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.8e-07 57.4 70 45.7
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 5.8e-07 57.4 68 45.6
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 5.8e-07 57.4 72 47.2
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 7.5e-07 57.0 70 48.6
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 7.5e-07 57.0 79 44.3
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 1.3e-06 56.2 72 45.8
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 1.3e-06 56.2 71 49.3
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.7e-06 55.8 69 47.8
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.7e-06 55.8 77 45.5
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 2.2e-06 55.5 70 51.4
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 2.2e-06 55.5 63 41.3
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.2e-06 55.5 63 41.3
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 2.2e-06 55.5 63 41.3
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.2e-06 55.5 70 44.3
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 2.9e-06 55.1 70 47.1
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 2.9e-06 55.1 70 45.7
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 3.7e-06 54.7 79 43.0
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 4.9e-06 54.3 72 50.0
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 4.9e-06 54.3 72 50.0
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 4.9e-06 54.3 75 48.0
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 4.9e-06 54.3 74 52.7
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 4.9e-06 54.3 58 50.0
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 4.9e-06 54.3 49 49.0
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 6.4e-06 53.9 60 51.7
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 6.4e-06 53.9 60 51.7
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 6.4e-06 53.9 46 52.2


User provided reference genes

Program Settings