Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 1.1e-73 280.0 156 100.0
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 6.2e-69 264.2 156 94.9
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 4.4e-67 258.1 156 92.3
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 1.7e-58 229.6 157 87.3
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 7.4e-46 187.6 161 73.3
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 1.6e-45 186.4 156 71.2
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.5e-43 179.9 156 72.4
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 7.6e-43 177.6 158 70.3
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 1.7e-42 176.4 157 72.6
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 3.8e-42 175.3 156 71.2
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.5e-42 174.5 156 70.5
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 8.4e-42 174.1 163 69.3
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.9e-41 172.9 155 71.6
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 1.9e-41 172.9 154 68.8
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 2.5e-41 172.6 156 69.2
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 4.2e-41 171.8 156 71.2
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 4.2e-41 171.8 156 71.2
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.7e-40 169.1 159 72.3
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 2.7e-40 169.1 159 69.8
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 6.0e-40 167.9 159 71.7
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 6.0e-40 167.9 159 71.7
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 7.9e-40 167.5 157 70.1
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 1.3e-39 166.8 156 69.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 1.8e-39 166.4 158 66.5
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.1e-38 163.7 159 70.4
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 3.3e-38 162.2 164 65.2
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 4.3e-38 161.8 159 68.6
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-37 160.2 157 65.6
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 2.2e-37 159.5 163 63.2
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 8.2e-37 157.5 155 66.5
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.1e-36 157.1 105 84.8
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.4e-36 156.8 155 69.0
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 6.9e-36 154.5 157 67.5
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 9.0e-36 154.1 156 66.0
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 2.0e-35 152.9 169 63.3
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 2.0e-35 152.9 154 65.6
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 4.5e-35 151.8 156 67.9
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 1.0e-34 150.6 196 55.1
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 1.7e-34 149.8 154 66.9
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 2.2e-34 149.4 160 63.1
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 2.9e-34 149.1 139 64.0
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 2.9e-34 149.1 139 64.0
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 5.0e-34 148.3 154 67.5
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.4e-33 146.7 156 64.7
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.5e-33 146.0 142 69.0
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 5.5e-33 144.8 135 68.9
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 7.2e-33 144.4 157 65.6
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 7.2e-33 144.4 157 65.6
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 1.2e-32 143.7 148 65.5
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.2e-32 143.7 133 66.9
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 1.6e-32 143.3 159 63.5
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 1.6e-32 143.3 159 63.5
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 2.1e-32 142.9 151 63.6
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 2.7e-32 142.5 156 64.7
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.7e-32 142.5 162 63.0
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 3.6e-32 142.1 159 61.0
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 4.6e-32 141.7 156 64.1
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 4.6e-32 141.7 157 65.0
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 7.9e-32 141.0 156 65.4
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 1.8e-31 139.8 152 64.5
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 1.8e-31 139.8 160 61.9
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 1.8e-31 139.8 160 61.9
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 2.3e-31 139.4 152 60.5
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 3.0e-31 139.0 139 63.3
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 3.9e-31 138.7 157 65.0
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 3.9e-31 138.7 153 63.4
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 5.1e-31 138.3 152 59.9
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 6.7e-31 137.9 136 67.6
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 8.8e-31 137.5 145 64.8
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 8.8e-31 137.5 145 64.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 1.1e-30 137.1 148 65.5
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 1.1e-30 137.1 165 61.2
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 1.1e-30 137.1 155 62.6
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 1.1e-30 137.1 153 63.4
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 1.5e-30 136.7 164 62.2
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 2.0e-30 136.3 146 64.4
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 2.5e-30 136.0 157 59.2
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 4.3e-30 135.2 138 67.4
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 9.7e-30 134.0 154 61.7
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 1.7e-29 133.3 144 63.9
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 2.2e-29 132.9 156 62.2
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 2.2e-29 132.9 137 61.3
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 2.8e-29 132.5 163 62.6
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 1.1e-28 130.6 156 57.1
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.4e-28 130.2 159 61.6
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.4e-28 130.2 159 61.6
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.4e-28 130.2 159 61.6
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 2.4e-28 129.4 145 57.9
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 3.1e-28 129.0 133 65.4
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 3.1e-28 129.0 153 62.1
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 5.3e-28 128.3 126 68.3
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 5.3e-28 128.3 162 61.7
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 5.3e-28 128.3 151 60.3
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.0e-27 126.3 137 65.0
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 2.0e-27 126.3 132 64.4
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 2.6e-27 125.9 163 60.1
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 7.7e-27 124.4 161 57.1
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 2.2e-26 122.9 155 56.8
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 3.8e-26 122.1 160 60.0
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 1.9e-25 119.8 142 58.5
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 5.5e-25 118.2 78 82.1
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.0e-23 114.0 147 58.5
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 1.8e-23 113.2 156 58.3
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 3.9e-23 112.1 166 53.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 3.9e-23 112.1 83 74.7
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.1e-22 110.5 155 54.2
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 1.5e-22 110.2 116 62.9
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 5.7e-22 108.2 79 75.9
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 5.7e-22 108.2 89 70.8
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 5.7e-22 108.2 89 70.8
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 7.4e-22 107.8 89 74.2
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 9.7e-22 107.5 75 78.7
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 9.7e-22 107.5 160 53.8
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 2.8e-21 105.9 105 64.8
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 6.3e-21 104.8 163 47.2
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 8.2e-21 104.4 146 56.2
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 8.2e-21 104.4 98 65.3
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 1.8e-20 103.2 94 66.0
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 2.4e-20 102.8 66 83.3
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 1.9e-17 93.2 125 53.6
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.2e-13 79.7 59 78.0
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 2.6e-11 72.8 129 52.7
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 4.5e-11 72.0 135 48.9
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 5.9e-11 71.6 115 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.3e-10 70.5 130 49.2
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 8.5e-10 67.8 136 50.7
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.1e-09 67.4 83 56.6
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 1.2e-06 57.4 46 71.7


User provided reference genes

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