Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G023380 Citrullus lanatus HOM05D006452 ORTHO05D008068 0.0e+00 1313.5 671 100.0
MELO3C007247.2 Cucumis melo HOM05D006452 ORTHO05D008068 2.8e-307 1058.1 672 81.1
Sed0012413 Sechium edule HOM05D006452 ORTHO05D008068 2.0e-209 733.0 496 76.0
CsaV3_6G050510 Cucumis sativus L. HOM05D006452 ORTHO05D008068 1.5e-199 700.3 458 77.5
CiPaw.09G065500 Carya illinoinensis HOM05D006452 ORTHO05D008068 2.0e-193 679.9 661 55.1
Cfa000544 Carpinus fangiana HOM05D006452 ORTHO05D008068 1.4e-189 667.2 655 55.3
QL05p043485 Quercus lobata HOM05D006452 ORTHO05D008068 1.1e-186 657.5 643 55.8
Ciclev10014636m.g Citrus clementina HOM05D006452 ORTHO05D008068 3.1e-186 656.0 648 54.2
GSVIVG01021140001 Vitis vinifera HOM05D006452 ORTHO05D008068 2.0e-185 653.3 652 53.5
MD05G1308100 Malus domestica HOM05D006452 ORTHO05D008068 5.6e-183 645.2 642 54.2
Thecc.06G178700 Theobroma cacao HOM05D006452 ORTHO05D008068 7.3e-183 644.8 664 52.6
TAR629G0815 Trochodendron aralioides HOM05D006452 ORTHO05D008068 1.8e-181 640.2 652 53.1
Actinidia39488 Actinidia chinensis HOM05D006452 ORTHO05D008068 1.7e-179 633.6 668 52.7
Gorai.010G157000 Gossypium raimondii HOM05D006452 ORTHO05D008068 2.2e-179 633.3 633 52.6
Duzib235G0445 Durio zibethinus HOM05D006452 ORTHO05D008068 8.3e-179 631.3 673 52.3
RcHm_v2.0_Chr5g0009531 Rosa chinensis HOM05D006452 ORTHO05D008068 2.4e-178 629.8 663 52.8
Gohir.A06G134400 Gossypium hirsutum HOM05D006452 ORTHO05D008068 1.6e-177 627.1 633 52.1
Ca_00397_v3 Cicer arietinum L. HOM05D006452 ORTHO05D008068 2.7e-177 626.3 668 51.2
Lj6g0021964 Lotus japonicus HOM05D006452 ORTHO05D008068 2.7e-177 626.3 634 52.5
Gohir.D06G135100 Gossypium hirsutum HOM05D006452 ORTHO05D008068 6.6e-176 621.7 634 52.4
FvH4_3g08370 Fragaria vesca HOM05D006452 ORTHO05D008068 1.5e-175 620.5 662 51.8
Hma1.2p1_1465F.1_g285350 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 1.5e-175 620.5 597 57.0
TWI38G0383 Tripterygium wilfordii HOM05D006452 ORTHO05D008068 5.6e-175 618.6 631 53.9
Medtr2g014890 Medicago truncatula HOM05D006452 ORTHO05D008068 1.2e-174 617.5 659 50.7
CSS0041533 Camellia sinensis var. sinensis HOM05D006452 ORTHO05D008068 4.7e-174 615.5 663 52.9
CANSAT35G2027 Cannabis sativa HOM05D006452 ORTHO05D008068 1.1e-173 614.4 666 50.9
Sabra04G0032100 Salix brachista HOM05D006452 ORTHO05D008068 3.1e-173 612.8 659 50.5
Prupe.4G054700 Prunus persica HOM05D006452 ORTHO05D008068 9.8e-172 607.8 654 51.7
COL.COLO4_31396 Corchorus olitorius HOM05D006452 ORTHO05D008068 9.2e-170 601.3 627 51.7
Phvul.006G180500 Phaseolus vulgaris HOM05D006452 ORTHO05D008068 7.8e-169 598.2 650 50.9
Glyma.10G069100 Glycine max HOM05D006452 ORTHO05D008068 1.0e-168 597.8 651 50.7
Manes.17G051000 Manihot esculenta HOM05D006452 ORTHO05D008068 1.7e-168 597.0 662 49.2
Lj1A1199G43 Lonicera japonica HOM05D006452 ORTHO05D008068 2.3e-168 596.7 615 53.7
Glyma.13G152304 Glycine max HOM05D006452 ORTHO05D008068 8.6e-168 594.7 625 51.8
Nitab4.5_0001375g0100 Nicotiana tabacum HOM05D006452 ORTHO05D008068 7.3e-167 591.7 639 51.0
Lalb_Chr18g0059351 Lupinus albus HOM05D006452 ORTHO05D008068 1.6e-166 590.5 649 50.5
Nn1g06365 Nelumbo nucifera HOM05D006452 ORTHO05D008068 2.1e-166 590.1 659 49.9
VMungo0540G0818 Vigna mungo HOM05D006452 ORTHO05D008068 3.6e-166 589.3 650 50.9
Nitab4.5_0000516g0020 Nicotiana tabacum HOM05D006452 ORTHO05D008068 8.9e-165 584.7 664 49.4
Oeu001094.1 Olea europaea HOM05D006452 ORTHO05D008068 3.4e-164 582.8 631 50.1
PGSC0003DMG400012819 Solanum tuberosum HOM05D006452 ORTHO05D008068 4.4e-164 582.4 667 49.6
FAN25G3335 Fragaria x ananassa HOM05D006452 ORTHO05D008068 2.1e-161 573.5 629 50.7
Rhsim02G0137400 Rhododendron simsii HOM05D006452 ORTHO05D008068 1.3e-160 570.9 678 48.4
arahy.Tifrunner.gnm1.ann1.FLUH97 Arachis hypogaea HOM05D006452 ORTHO05D008068 1.7e-160 570.5 661 48.3
Sopen03g002290 Solanum pennellii HOM05D006452 ORTHO05D008068 5.6e-159 565.5 624 50.2
C03p75340 Brassica napus HOM05D006452 ORTHO05D008068 1.2e-158 564.3 662 48.3
BcaC01g00067 Brassica carinata HOM05D006452 ORTHO05D008068 4.7e-158 562.4 662 48.3
BolC3t19793H Brassica oleracea HOM05D006452 ORTHO05D008068 6.2e-158 562.0 662 48.0
FAN21G3590 Fragaria x ananassa HOM05D006452 ORTHO05D008068 6.8e-157 558.5 664 49.4
Aqoxy4G00567 Aquilegia oxysepala HOM05D006452 ORTHO05D008068 1.5e-156 557.4 657 49.0
PSO832G2664 Papaver somniferum HOM05D006452 ORTHO05D008068 7.6e-156 555.1 693 45.7
arahy.Tifrunner.gnm1.ann1.228Z0R Arachis hypogaea HOM05D006452 ORTHO05D008068 2.2e-155 553.5 661 47.7
A08p25460 Brassica napus HOM05D006452 ORTHO05D008068 2.2e-155 553.5 666 47.4
Atru.chr10.1767 Acer truncatum HOM05D006452 ORTHO05D008068 2.9e-155 553.1 529 56.0
BraA08t34497Z Brassica rapa HOM05D006452 ORTHO05D008068 4.9e-155 552.4 663 47.5
THA.LOC104812622 Tarenaya hassleriana HOM05D006452 ORTHO05D008068 4.9e-155 552.4 617 49.9
EL10Ac8g20457 Beta vulgaris HOM05D006452 ORTHO05D008068 9.2e-154 548.1 653 47.2
CARHR028010 Cardamine hirsuta HOM05D006452 ORTHO05D008068 1.2e-153 547.7 650 47.7
BcaB03g12098 Brassica carinata HOM05D006452 ORTHO05D008068 1.6e-153 547.4 667 47.1
AT1G28530 Arabidopsis thaliana HOM05D006452 ORTHO05D008068 3.5e-153 546.2 632 48.9
Carub.0001s2699 Capsella rubella HOM05D006452 ORTHO05D008068 3.5e-153 546.2 611 49.4
Haze_06337 Corylus avellana HOM05D006452 ORTHO05D008068 3.5e-153 546.2 700 47.0
PSO210G4080 Papaver somniferum HOM05D006452 ORTHO05D008068 1.3e-152 544.3 693 45.0
AL1G42150 Arabidopsis lyrata HOM05D006452 ORTHO05D008068 2.3e-152 543.5 610 49.8
Thhalv10007091m.g Eutrema salsugineum HOM05D006452 ORTHO05D008068 6.6e-152 542.0 636 48.9
FAN11G3013 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.1e-151 541.2 663 48.4
AUR62031101 Chenopodium quinoa HOM05D006452 ORTHO05D008068 3.3e-151 539.7 609 48.9
Aa31LG6G11040 Aethionema arabicum HOM05D006452 ORTHO05D008068 2.8e-150 536.6 673 46.4
Lsat_1_v5_gn_4_51620 Lactuca sativa HOM05D006452 ORTHO05D008068 4.7e-150 535.8 652 45.7
AUR62014896 Chenopodium quinoa HOM05D006452 ORTHO05D008068 6.2e-150 535.4 610 48.2
ECA234G2428 Erigeron canadensis HOM05D006452 ORTHO05D008068 8.1e-150 535.0 665 45.0
Sp1g24780 Schrenkiella parvula HOM05D006452 ORTHO05D008068 2.4e-149 533.5 627 47.5
Cc00_g07720 Coffea canephora HOM05D006452 ORTHO05D008068 4.0e-149 532.7 648 47.2
HanXRQChr16g0518591 Helianthus annuus HOM05D006452 ORTHO05D008068 2.0e-148 530.4 613 46.3
Migut.M01092 Erythranthe guttata HOM05D006452 ORTHO05D008068 8.4e-147 525.0 667 46.0
SalBow8G3895 Salvia bowleyana HOM05D006452 ORTHO05D008068 8.4e-139 498.4 695 43.0
TPR.G11703 Trifolium pratense HOM05D006452 ORTHO05D008068 1.5e-135 487.6 455 56.7
SGA_v2.0_scaffold16G07655 Striga asiatica HOM05D006452 ORTHO05D008068 2.5e-135 486.9 610 43.6
Dinv40619 Davidia involucrata HOM05D006452 ORTHO05D008068 4.0e-133 479.6 492 51.6
Hma1.2p1_1465F.1_g285340 Hydrangea macrophylla HOM05D006452 ORTHO05D008068 3.4e-132 476.5 429 60.6
Solyc03g006280.4 Solanum lycopersicum HOM05D006452 ORTHO05D008068 4.5e-132 476.1 622 45.3
MBI07_g32549_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.9e-131 472.6 607 46.0
ATR0602G160 Amborella trichopoda HOM05D006452 ORTHO05D008068 1.0e-128 464.9 685 40.6
unitig_8.g4630 Utricularia gibba HOM05D006452 ORTHO05D008068 9.0e-125 451.8 633 42.5
Cpa.g.sc7.8 Carica papaya HOM05D006452 ORTHO05D008068 6.5e-123 445.7 422 55.9
Psat1g201640 Pisum sativum HOM05D006452 ORTHO05D008068 7.9e-121 438.7 383 59.0
PGR004G2109 Punica granatum HOM05D006452 ORTHO05D008068 4.3e-119 433.0 413 55.7
Sc17g0005860 Simmondsia chinensis HOM05D006452 ORTHO05D008068 2.8e-118 430.3 671 41.1
DCAR_006579 Daucus carota HOM05D006452 ORTHO05D008068 1.8e-117 427.6 660 41.8
Potri.004G051000 Populus trichocarpa HOM05D006452 ORTHO05D008068 5.9e-116 422.5 458 49.3
CAN.G189.65 Capsicum annuum HOM05D006452 ORTHO05D008068 2.2e-115 420.6 417 54.4
Hund23835 Selenicereus undatus HOM05D006452 ORTHO05D008068 8.5e-115 418.7 469 50.1
Eucgr.D00580 Eucalyptus grandis HOM05D006452 ORTHO05D008068 1.1e-114 418.3 429 53.4
Peaxi162Scf01018g00215 Petunia axillaris HOM05D006452 ORTHO05D008068 7.2e-114 415.6 629 41.5
HPP92_000497 Vanilla planifolia HOM05D006452 ORTHO05D008068 2.1e-113 414.1 632 40.7
FAN16G3312 Fragaria x ananassa HOM05D006452 ORTHO05D008068 1.8e-112 411.0 458 48.5
vmacro15945 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 2.8e-110 403.7 405 54.3
CDE10G0189 Ceratophyllum demersum HOM05D006452 ORTHO05D008068 1.4e-106 391.3 532 41.0
Os02g0109900 Oryza sativa ssp. japonica HOM05D006452 ORTHO05D008068 1.1e-90 338.6 594 36.7
MBI07_g06446_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.2e-84 318.5 643 35.1
Zm00001eb229620 Zea mays HOM05D006452 ORTHO05D008068 8.5e-83 312.4 599 35.6
CAN.G1286.36 Capsicum annuum HOM05D006452 ORTHO05D008068 3.0e-72 277.3 293 50.5
Mapoly0052s0014 Marchantia polymorpha HOM05D006452 ORTHO05D008068 3.4e-63 247.3 621 28.0
CAN.G801.36 Capsicum annuum HOM05D006452 ORTHO05D008068 2.7e-52 211.1 233 48.5
AagrBONN_evm.TU.Sc2ySwM_228.5590 Anthoceros agrestis HOM05D006452 ORTHO05D008068 6.0e-44 183.3 631 26.9
TPR.G10795 Trifolium pratense HOM05D006452 ORTHO05D008068 5.2e-40 170.2 250 41.2
Psat1g201600 Pisum sativum HOM05D006452 ORTHO05D008068 6.6e-35 153.3 237 38.4
vmacro15946 Vaccinium macrocarpon HOM05D006452 ORTHO05D008068 4.8e-33 147.1 181 47.5
SEGI_16257 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 7.1e-29 133.3 317 33.4
SEGI_13408 Sequoiadendron giganteum HOM05D006452 ORTHO05D008068 1.1e-24 119.4 207 35.3
Lsat_1_v5_gn_9_9480 Lactuca sativa HOM05D006452 ORTHO05D008068 9.0e-24 116.3 260 29.2
unitig_8.g4641 Utricularia gibba HOM05D006452 ORTHO05D008068 9.0e-24 116.3 183 35.5
CDE10G0511 Ceratophyllum demersum HOM05D002520 ORTHO05D003144 3.4e-23 114.4 110 57.3
Peaxi162Scf01018g00213 Petunia axillaris HOM05D006452 ORTHO05D008068 9.0e-16 89.7 67 65.7
Pp3c17_22050 Physcomitrium patens HOM05D006452 ORTHO05D008068 3.4e-15 87.8 361 26.9
GSVIVG01026713001 Vitis vinifera HOM05D006452 ORTHO05D008068 1.0e-14 86.3 77 59.7
MBI15_g20021_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 3.8e-14 84.3 77 59.7
BcaC01g06820 Brassica carinata HOM05D006452 ORTHO05D008068 1.4e-13 82.4 93 50.5
FvH4_3g08350 Fragaria vesca HOM05D003433 ORTHO05D003921 3.1e-08 64.7 46 63.0
MBI05_g44052_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 4.1e-08 64.3 80 42.5
MBI05_g22668_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D008068 1.5e-07 62.4 59 52.5
MBI05_g40582_MAGBIO Magnolia biondii HOM05D006452 ORTHO05D029689 4.5e-07 60.8 70 45.7
CAN.G638.7 Capsicum annuum HOM05D006452 ORTHO05D008068 1.0e-06 59.7 217 29.5


User provided reference genes

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