Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G023230 Citrullus lanatus HOM05D007160 ORTHO05D005331 3.4e-150 535.0 281 100.0
MELO3C007263.2 Cucumis melo HOM05D007160 ORTHO05D005331 7.4e-105 384.4 303 74.9
CsaV3_6G050380 Cucumis sativus L. HOM05D007160 ORTHO05D005331 9.7e-89 330.9 303 68.0
Sed0007130 Sechium edule HOM05D007160 ORTHO05D005331 4.5e-62 242.3 284 56.3
Sed0008189 Sechium edule HOM05D007160 ORTHO05D005331 2.3e-45 186.8 284 49.3
Duzib192G1060 Durio zibethinus HOM05D007160 ORTHO05D005331 4.0e-26 122.9 297 36.4
PGR042G2677 Punica granatum HOM05D007160 ORTHO05D005331 1.3e-19 101.3 302 36.8
Cfa000523 Carpinus fangiana HOM05D007160 ORTHO05D005331 1.1e-18 98.2 271 37.3
Gorai.009G167000 Gossypium raimondii HOM05D007160 ORTHO05D005331 9.0e-18 95.1 284 35.9
Duzib160G0215 Durio zibethinus HOM05D007160 ORTHO05D005331 4.5e-17 92.8 286 36.0
Ca_18588_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 1.7e-16 90.9 295 31.9
Gohir.D05G162000 Gossypium hirsutum HOM05D007160 ORTHO05D005331 1.7e-16 90.9 284 35.2
Psat1g203080 Pisum sativum HOM05D007160 ORTHO05D005331 8.4e-16 88.6 261 32.6
Ca_00358_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.1e-14 84.0 295 33.6
Ca_30973_v3 Cicer arietinum L. HOM05D007160 ORTHO05D005331 2.1e-14 84.0 295 33.6
Gohir.A10G027800 Gossypium hirsutum HOM05D007160 ORTHO05D005331 2.7e-14 83.6 324 32.1
Sabra11G0039600 Salix brachista HOM05D007160 ORTHO05D005331 1.0e-13 81.6 291 32.3
Haze_06386 Corylus avellana HOM05D007160 ORTHO05D005331 1.3e-13 81.3 313 35.5
Phvul.006G182700 Phaseolus vulgaris HOM05D007160 ORTHO05D005331 1.8e-13 80.9 299 31.4
Thecc.06G181500 Theobroma cacao HOM05D007160 ORTHO05D005331 1.8e-13 80.9 196 35.2
VMungo0540G2483 Vigna mungo HOM05D007160 ORTHO05D005331 2.3e-13 80.5 290 31.4
MSTRG.15854 Avicennia marina HOM05D007160 ORTHO05D005331 3.9e-13 79.7 320 32.8
Duzib235G1074 Durio zibethinus HOM05D007160 ORTHO05D005331 3.9e-13 79.7 319 32.3
SalBow8G5472 Salvia bowleyana HOM05D007160 ORTHO05D005331 3.9e-13 79.7 305 33.4
Lj4g0028244 Lotus japonicus HOM05D007160 ORTHO05D005331 5.1e-13 79.3 272 34.6
SalBow8G2878 Salvia bowleyana HOM05D007160 ORTHO05D005331 5.1e-13 79.3 305 33.4
Sabra04G0030300 Salix brachista HOM05D007160 ORTHO05D005331 6.7e-13 79.0 320 32.8
Gohir.D10G028200 Gossypium hirsutum HOM05D007160 ORTHO05D005331 8.7e-13 78.6 299 31.8
Dinv17351 Davidia involucrata HOM05D007160 ORTHO05D005331 1.5e-12 77.8 216 33.8
Cc02_g13790 Coffea canephora HOM05D007160 ORTHO05D005331 3.3e-12 76.6 158 37.3
Potri.011G057500 Populus trichocarpa HOM05D007160 ORTHO05D005331 3.3e-12 76.6 304 32.2
CARHR128000 Cardamine hirsuta HOM05D009159 ORTHO05D005331 4.3e-12 76.3 279 32.3
BcaB03g12106 Brassica carinata HOM05D009159 ORTHO05D005331 7.4e-12 75.5 296 32.1
MSTRG.13207 Avicennia marina HOM05D007160 ORTHO05D005331 9.6e-12 75.1 285 33.3
Lj6g0014856 Lotus japonicus HOM05D007160 ORTHO05D005331 2.1e-11 73.9 301 33.2
TPR.G19911 Trifolium pratense HOM05D007160 ORTHO05D005331 2.8e-11 73.6 363 30.6
C03p75110 Brassica napus HOM05D009159 ORTHO05D005331 3.7e-11 73.2 298 32.9
BcaC01g00047 Brassica carinata HOM05D009159 ORTHO05D005331 4.8e-11 72.8 298 33.6
Manes.17G049000 Manihot esculenta HOM05D007160 ORTHO05D005331 4.8e-11 72.8 299 33.8
Oeu014779.1 Olea europaea HOM05D007160 ORTHO05D005331 4.8e-11 72.8 290 32.8
BolC3t19771H Brassica oleracea HOM05D009159 ORTHO05D005331 6.2e-11 72.4 298 33.6
arahy.Tifrunner.gnm1.ann1.AUV6LD Arachis hypogaea HOM05D007160 ORTHO05D005331 8.1e-11 72.0 310 33.2
Hma1.2p1_0558F.1_g178530 Hydrangea macrophylla HOM05D007160 ORTHO05D005331 1.1e-10 71.6 309 32.7
Medtr2g014400 Medicago truncatula HOM05D007160 ORTHO05D005331 1.8e-10 70.9 259 32.0
CANSAT35G1941 Cannabis sativa HOM05D007160 ORTHO05D005331 3.1e-10 70.1 258 32.2
arahy.Tifrunner.gnm1.ann1.704E4A Arachis hypogaea HOM05D007160 ORTHO05D005331 4.0e-10 69.7 270 33.3
DCAR_008006 Daucus carota HOM05D007160 ORTHO05D005331 4.0e-10 69.7 319 30.4
Peaxi162Scf00031g00084 Petunia axillaris HOM05D007160 ORTHO05D005331 5.3e-10 69.3 354 28.0
Potri.004G048301 Populus trichocarpa HOM05D007160 ORTHO05D005331 5.3e-10 69.3 317 30.3
Thhalv10008366m.g Eutrema salsugineum HOM05D009159 ORTHO05D005331 6.9e-10 68.9 297 32.0
DCAR_004048 Daucus carota HOM05D007160 ORTHO05D005331 1.5e-09 67.8 146 40.4
Glyma.13G236100 Glycine max HOM05D007160 ORTHO05D005331 1.5e-09 67.8 295 32.5
A08p25580 Brassica napus HOM05D009159 ORTHO05D005331 2.0e-09 67.4 290 31.0
BraA08t34510Z Brassica rapa HOM05D009159 ORTHO05D005331 2.0e-09 67.4 290 31.0
CiPaw.09G063200 Carya illinoinensis HOM05D007160 ORTHO05D005331 2.0e-09 67.4 284 32.4
FvH4_3g08671 Fragaria vesca HOM05D007160 ORTHO05D005331 4.5e-09 66.2 189 38.6
FAN11G0877 Fragaria x ananassa HOM05D007160 ORTHO05D005331 4.5e-09 66.2 189 38.6
Gorai.011G030000 Gossypium raimondii HOM05D007160 ORTHO05D005331 4.5e-09 66.2 165 33.3
Ciclev10016200m.g Citrus clementina HOM05D007160 ORTHO05D005331 5.8e-09 65.9 306 29.4
FAN16G2322 Fragaria x ananassa HOM05D007160 ORTHO05D005331 5.8e-09 65.9 189 36.0
Nitab4.5_0000516g0060 Nicotiana tabacum HOM05D007160 ORTHO05D005331 5.8e-09 65.9 97 41.2
FAN21G2372 Fragaria x ananassa HOM05D007160 ORTHO05D005331 7.6e-09 65.5 199 36.2
AL1G42030 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 9.9e-09 65.1 320 28.4
Lalb_Chr20g0121591 Lupinus albus HOM05D007160 ORTHO05D005331 9.9e-09 65.1 268 31.0
SalBow8G4606 Salvia bowleyana HOM05D007160 ORTHO05D005331 9.9e-09 65.1 95 47.4
Sc17g0005960 Simmondsia chinensis HOM05D028926 ORTHO05D005331 1.7e-08 64.3 288 29.5
AL4G29650 Arabidopsis lyrata HOM05D009159 ORTHO05D005331 2.9e-08 63.5 284 32.4
Glyma.15G077600 Glycine max HOM05D007160 ORTHO05D005331 2.9e-08 63.5 293 31.7
Nitab4.5_0000516g0090 Nicotiana tabacum HOM05D007160 ORTHO05D005331 2.9e-08 63.5 97 42.3
ECA236G4287 Erigeron canadensis HOM05D007160 ORTHO05D005331 8.4e-08 62.0 329 28.3
Peaxi162Scf01018g00012 Petunia axillaris HOM05D007160 ORTHO05D005331 8.4e-08 62.0 314 30.3
Medtr4g088385 Medicago truncatula HOM05D007160 ORTHO05D005331 1.1e-07 61.6 386 26.9
AT2G33850 Arabidopsis thaliana HOM05D009159 ORTHO05D005331 1.4e-07 61.2 288 31.2
EL10Ac8g20435 Beta vulgaris HOM05D007160 ORTHO05D005331 1.9e-07 60.8 102 46.1
Nitab4.5_0001375g0150 Nicotiana tabacum HOM05D007160 ORTHO05D005331 1.9e-07 60.8 85 43.5
Prupe.4G052200 Prunus persica HOM05D007160 ORTHO05D005331 1.9e-07 60.8 336 32.1
QL05p042103 Quercus lobata HOM05D007160 ORTHO05D005331 2.4e-07 60.5 304 33.2
QL05p042154 Quercus lobata HOM05D007160 ORTHO05D005331 2.4e-07 60.5 304 33.2
Sp1g24680 Schrenkiella parvula HOM05D009159 ORTHO05D005331 3.2e-07 60.1 291 32.3
Nitab4.5_0001375g0120 Nicotiana tabacum HOM05D007160 ORTHO05D005331 4.2e-07 59.7 85 40.0
Cpa.g.sc27.8 Carica papaya HOM05D007160 ORTHO05D005331 5.5e-07 59.3 346 29.8
MD05G1310400 Malus domestica HOM05D007160 ORTHO05D005331 7.1e-07 58.9 350 29.1
VMungo0251G1795 Vigna mungo HOM05D007160 ORTHO05D005331 7.1e-07 58.9 396 24.7
TWI63G1823 Tripterygium wilfordii HOM05D007160 ORTHO05D005331 1.2e-06 58.2 332 32.2
PSO832G0372 Papaver somniferum HOM05D025247 ORTHO05D050219 1.6e-06 57.8 305 25.2
Rhsim13G0180200 Rhododendron simsii HOM05D007160 ORTHO05D005331 2.1e-06 57.4 278 30.6
Gohir.A05G159300 Gossypium hirsutum HOM05D007160 ORTHO05D005331 2.7e-06 57.0 158 37.3
BcaB07g32463 Brassica carinata HOM05D009159 ORTHO05D005331 3.5e-06 56.6 310 29.4
PGSC0003DMG400031775 Solanum tuberosum HOM05D007160 ORTHO05D005331 3.5e-06 56.6 357 26.9
PSO210G1528 Papaver somniferum HOM05D025247 ORTHO05D050219 6.0e-06 55.8 242 26.4
Nitab4.5_0000516g0070 Nicotiana tabacum HOM05D007160 ORTHO05D005331 7.9e-06 55.5 82 40.2


User provided reference genes

Program Settings