Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 2.0e-77 292.4 145 100.0
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 1.7e-49 199.5 147 72.1
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 1.3e-39 166.8 127 70.9
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 2.7e-34 149.1 125 65.6
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 5.6e-24 114.8 143 45.5
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 1.6e-23 113.2 144 47.9
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 4.8e-23 111.7 144 45.8
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 1.4e-22 110.2 136 49.3
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 6.9e-22 107.8 143 43.4
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 9.0e-22 107.5 142 43.0
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 1.2e-21 107.1 136 46.3
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 1.5e-21 106.7 142 43.0
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 2.0e-21 106.3 140 44.3
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 2.6e-21 105.9 143 41.3
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 4.5e-21 105.1 145 44.8
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 4.5e-21 105.1 143 42.0
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 4.5e-21 105.1 153 41.2
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 2.9e-20 102.4 145 43.4
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 2.9e-20 102.4 141 41.8
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 2.9e-20 102.4 136 44.1
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 6.5e-20 101.3 143 44.8
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 6.5e-20 101.3 147 38.8
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 8.4e-20 100.9 152 39.5
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 8.4e-20 100.9 144 41.7
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 8.4e-20 100.9 147 38.8
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 8.4e-20 100.9 147 38.8
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 1.1e-19 100.5 150 43.3
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 1.1e-19 100.5 146 41.8
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 1.4e-19 100.1 142 45.1
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 1.4e-19 100.1 132 46.2
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 1.4e-19 100.1 145 40.0
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 1.9e-19 99.8 142 43.7
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 1.9e-19 99.8 144 42.4
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 2.5e-19 99.4 141 39.7
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 3.2e-19 99.0 144 42.4
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 4.2e-19 98.6 148 41.9
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 5.5e-19 98.2 148 42.6
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 7.1e-19 97.8 146 40.4
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 9.3e-19 97.4 143 43.4
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 1.2e-18 97.1 153 38.6
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 1.2e-18 97.1 142 39.4
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 1.6e-18 96.7 145 41.4
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 1.6e-18 96.7 142 41.5
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 1.6e-18 96.7 146 38.4
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 2.7e-18 95.9 149 41.6
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 3.5e-18 95.5 142 40.8
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 4.6e-18 95.1 147 41.5
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 6.0e-18 94.7 144 41.0
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 6.0e-18 94.7 137 41.6
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 7.9e-18 94.4 134 43.3
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 7.9e-18 94.4 144 46.5
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 1.8e-17 93.2 139 39.6
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 1.8e-17 93.2 149 41.6
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 3.0e-17 92.4 139 41.0
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 3.0e-17 92.4 147 43.5
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 3.0e-17 92.4 141 39.7
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 5.1e-17 91.7 145 42.1
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 6.7e-17 91.3 144 44.4
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 8.7e-17 90.9 145 42.1
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 8.7e-17 90.9 127 42.5
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 1.9e-16 89.7 142 40.8
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 2.5e-16 89.4 149 39.6
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 3.3e-16 89.0 150 40.0
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 3.3e-16 89.0 141 39.0
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 3.3e-16 89.0 146 41.8
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 5.7e-16 88.2 141 39.0
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 7.4e-16 87.8 150 41.3
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 9.7e-16 87.4 150 40.0
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 1.3e-15 87.0 134 41.8
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 1.6e-15 86.7 128 44.5
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 4.8e-15 85.1 147 37.4
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 6.3e-15 84.7 136 39.0
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 1.4e-14 83.6 138 38.4
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 2.4e-14 82.8 137 43.1
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 3.1e-14 82.4 128 41.4
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 2.0e-13 79.7 84 53.6
Aqoxy4G00641 Aquilegia oxysepala HOM05D007507 ORTHO05D009420 4.5e-13 78.6 122 41.8
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 4.5e-13 78.6 150 36.7
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 5.9e-13 78.2 146 39.0
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 3.8e-12 75.5 133 39.1
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 5.0e-12 75.1 88 50.0
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 6.5e-12 74.7 134 38.8
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 8.5e-12 74.3 106 43.4
PSO541G3558 Papaver somniferum HOM05D007507 ORTHO05D009420 2.7e-10 69.3 80 52.5
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 4.6e-10 68.6 100 42.0
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 7.9e-10 67.8 126 34.1
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 1.4e-09 67.0 74 54.1
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 1.8e-09 66.6 126 34.1
SEGI_35508 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 2.3e-09 66.2 91 41.8
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 5.1e-09 65.1 97 40.2
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.5e-08 63.5 70 51.4
SalBow8G0489 Salvia bowleyana HOM05D007507 ORTHO05D009420 2.5e-08 62.8 71 54.9
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 7.4e-08 61.2 96 40.6
SEGI_36970 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 9.7e-08 60.8 77 45.5
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 1.3e-07 60.5 105 39.0
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.7e-07 60.1 70 52.9
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 1.7e-07 60.1 70 52.9
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 2.8e-07 59.3 76 48.7
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 3.7e-07 58.9 70 48.6
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 3.7e-07 58.9 70 50.0
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.7e-07 58.9 77 50.6
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 3.7e-07 58.9 77 50.6
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 3.7e-07 58.9 69 50.7
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 4.8e-07 58.5 76 48.7
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 4.8e-07 58.5 112 39.3
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 6.3e-07 58.2 70 50.0
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 8.2e-07 57.8 72 51.4
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 8.2e-07 57.8 71 50.7
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 1.1e-06 57.4 73 47.9
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 1.1e-06 57.4 80 45.0
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 1.1e-06 57.4 70 48.6
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 1.4e-06 57.0 73 49.3
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 1.8e-06 56.6 71 46.5
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.8e-06 56.6 70 47.1
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 1.8e-06 56.6 70 50.0
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 1.8e-06 56.6 71 52.1
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.8e-06 56.6 70 50.0
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.4e-06 56.2 79 43.0
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 2.4e-06 56.2 71 46.5
Haze_06387 Corylus avellana HOM05D007507 ORTHO05D009420 2.4e-06 56.2 141 30.5
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 2.4e-06 56.2 71 49.3
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 2.4e-06 56.2 75 46.7
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.1e-06 55.8 72 44.4
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 3.1e-06 55.8 70 47.1
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 3.1e-06 55.8 79 48.1
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 3.1e-06 55.8 70 45.7
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.1e-06 55.8 71 52.1
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 3.1e-06 55.8 70 47.1
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 3.1e-06 55.8 70 47.1
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 3.1e-06 55.8 74 48.6
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 47.1
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 50.0
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 50.0
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 50.0
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 48.6
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 4.1e-06 55.5 70 48.6
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 5.3e-06 55.1 70 47.1
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 5.3e-06 55.1 75 45.3
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 5.3e-06 55.1 70 47.1
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 5.3e-06 55.1 69 49.3
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 5.3e-06 55.1 70 48.6
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 6.9e-06 54.7 70 50.0
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 6.9e-06 54.7 71 52.1
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 9.1e-06 54.3 75 45.3
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 9.1e-06 54.3 71 49.3
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 47.1
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 50.0
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 52.9
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 9.1e-06 54.3 71 50.7
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 45.7
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 9.1e-06 54.3 70 47.1
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 9.1e-06 54.3 80 42.5


User provided reference genes

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