Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G022160 Citrullus lanatus HOM05D006758 ORTHO05D008326 2.1e-54 215.3 101 100.0
MELO3C007373.2 Cucumis melo HOM05D006758 ORTHO05D008326 6.0e-49 197.2 101 94.1
CsaV3_6G049220 Cucumis sativus L. HOM05D006758 ORTHO05D008326 6.0e-49 197.2 101 94.1
Ciclev10017296m.g Citrus clementina HOM05D006758 ORTHO05D008326 3.0e-48 194.9 101 92.1
PGR004G2441 Punica granatum HOM05D006758 ORTHO05D008326 1.9e-47 192.2 101 92.1
arahy.Tifrunner.gnm1.ann1.ND4ZK6 Arachis hypogaea HOM05D006758 ORTHO05D008326 2.5e-47 191.8 101 91.1
Phvul.007G052700 Phaseolus vulgaris HOM05D006758 ORTHO05D008326 2.5e-47 191.8 101 91.1
Gohir.A09G069700 Gossypium hirsutum HOM05D006758 ORTHO05D008326 5.6e-47 190.7 101 90.1
Gohir.D09G069600 Gossypium hirsutum HOM05D006758 ORTHO05D008326 5.6e-47 190.7 101 90.1
Ca_10997_v3 Cicer arietinum L. HOM05D006758 ORTHO05D008326 7.4e-47 190.3 101 90.1
Gohir.A06G207900 Gossypium hirsutum HOM05D006758 ORTHO05D008326 7.4e-47 190.3 101 90.1
Gorai.010G252900 Gossypium raimondii HOM05D006758 ORTHO05D008326 7.4e-47 190.3 101 90.1
Duzib235G1228 Durio zibethinus HOM05D006758 ORTHO05D008326 9.6e-47 189.9 101 90.1
Nitab4.5_0002347g0160 Nicotiana tabacum HOM05D006758 ORTHO05D008326 9.6e-47 189.9 101 90.1
Nitab4.5_0008530g0010 Nicotiana tabacum HOM05D006758 ORTHO05D008326 9.6e-47 189.9 101 90.1
Sed0024295 Sechium edule HOM05D006758 ORTHO05D008326 9.6e-47 189.9 101 90.1
Thecc.06G214600 Theobroma cacao HOM05D006758 ORTHO05D008326 1.3e-46 189.5 101 89.1
Glyma.10G251800 Glycine max HOM05D006758 ORTHO05D008326 1.6e-46 189.1 101 90.1
Glyma.20G141700 Glycine max HOM05D006758 ORTHO05D008326 1.6e-46 189.1 101 90.1
Nn1g03624 Nelumbo nucifera HOM05D006758 ORTHO05D008326 1.6e-46 189.1 101 89.1
Zm00001eb413280 Zea mays HOM05D006758 ORTHO05D008326 2.1e-46 188.7 101 90.1
Duzib192G0534 Durio zibethinus HOM05D006758 ORTHO05D008326 2.8e-46 188.3 101 89.1
Os08g0190800 Oryza sativa ssp. japonica HOM05D006758 ORTHO05D008326 2.8e-46 188.3 101 89.1
COL.COLO4_31733 Corchorus olitorius HOM05D006758 ORTHO05D008326 3.7e-46 188.0 101 89.1
Eucgr.D01293 Eucalyptus grandis HOM05D006758 ORTHO05D008326 3.7e-46 188.0 101 89.1
Gorai.006G083800 Gossypium raimondii HOM05D006758 ORTHO05D008326 3.7e-46 188.0 93 93.5
Lalb_Chr06g0164881 Lupinus albus HOM05D006758 ORTHO05D008326 3.7e-46 188.0 101 89.1
Manes.17G035700 Manihot esculenta HOM05D006758 ORTHO05D008326 3.7e-46 188.0 101 89.1
TPR.G5478 Trifolium pratense HOM05D006758 ORTHO05D008326 3.7e-46 188.0 101 89.1
TWI38G0518 Tripterygium wilfordii HOM05D006758 ORTHO05D008326 3.7e-46 188.0 101 89.1
MD05G1341600 Malus domestica HOM05D006758 ORTHO05D008326 4.8e-46 187.6 101 89.1
Prupe.4G025700 Prunus persica HOM05D006758 ORTHO05D008326 4.8e-46 187.6 101 89.1
Rhsim02G0111700 Rhododendron simsii HOM05D006758 ORTHO05D008326 4.8e-46 187.6 101 89.1
Lj5g0020351 Lotus japonicus HOM05D006758 ORTHO05D008326 6.2e-46 187.2 101 88.1
Psat0s2691g0120 Pisum sativum HOM05D006758 ORTHO05D008326 6.2e-46 187.2 101 88.1
EL10Ac8g19995 Beta vulgaris HOM05D006758 ORTHO05D008326 8.1e-46 186.8 101 88.1
Potri.004G021200 Populus trichocarpa HOM05D006758 ORTHO05D008326 8.1e-46 186.8 101 88.1
Sabra04G0011700 Salix brachista HOM05D006758 ORTHO05D008326 8.1e-46 186.8 101 88.1
THA.LOC104809516 Tarenaya hassleriana HOM05D006758 ORTHO05D008326 8.1e-46 186.8 101 89.1
CAN.G569.41 Capsicum annuum HOM05D006758 ORTHO05D008326 1.1e-45 186.4 101 88.1
Dinv20021 Davidia involucrata HOM05D006758 ORTHO05D008326 1.1e-45 186.4 101 87.1
Solyc02g080140.4 Solanum lycopersicum HOM05D006758 ORTHO05D008326 1.1e-45 186.4 101 88.1
Sopen02g024850 Solanum pennellii HOM05D006758 ORTHO05D008326 1.1e-45 186.4 101 88.1
GSVIVG01012634001 Vitis vinifera HOM05D006758 ORTHO05D008326 1.4e-45 186.0 101 88.1
CANSAT56G2354 Cannabis sativa HOM05D006758 ORTHO05D008326 1.8e-45 185.7 101 87.1
MD10G1315000 Malus domestica HOM05D006758 ORTHO05D008326 2.4e-45 185.3 101 87.1
Oeu051222.1 Olea europaea HOM05D006758 ORTHO05D008326 2.4e-45 185.3 96 87.5
CiPaw.09G087600 Carya illinoinensis HOM05D006758 ORTHO05D008326 3.1e-45 184.9 101 88.1
AUR62022003 Chenopodium quinoa HOM05D006758 ORTHO05D008326 3.1e-45 184.9 101 88.1
Oeu037351.1 Olea europaea HOM05D006758 ORTHO05D008326 3.1e-45 184.9 101 88.1
SGA_v2.0_scaffold7G03879 Striga asiatica HOM05D006758 ORTHO05D008326 3.1e-45 184.9 101 87.1
TAR626G1807 Trochodendron aralioides HOM05D006758 ORTHO05D008326 6.9e-45 183.7 99 86.9
arahy.Tifrunner.gnm1.ann1.GJ8XD1 Arachis hypogaea HOM05D006758 ORTHO05D008326 9.0e-45 183.3 112 82.1
TAR624G0544 Trochodendron aralioides HOM05D006758 ORTHO05D008326 9.0e-45 183.3 101 87.1
CDE05G3555 Ceratophyllum demersum HOM05D006758 ORTHO05D008326 1.2e-44 183.0 101 86.1
Cc02_g11670 Coffea canephora HOM05D006758 ORTHO05D008326 1.5e-44 182.6 105 86.7
Hma1.2p1_2726F.1_g327620 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 1.5e-44 182.6 101 86.1
Hma1.2p1_2714F.1_g327410 Hydrangea macrophylla HOM05D006758 ORTHO05D008326 2.0e-44 182.2 101 86.1
PSO210G7269 Papaver somniferum HOM05D006758 ORTHO05D008326 2.0e-44 182.2 101 86.1
PSO832G0089 Papaver somniferum HOM05D006758 ORTHO05D008326 2.0e-44 182.2 101 86.1
SHI02162 Sapria himalayana HOM05D006758 ORTHO05D008326 2.0e-44 182.2 92 90.2
RcHm_v2.0_Chr5g0003931 Rosa chinensis HOM05D006758 ORTHO05D008326 3.4e-44 181.4 104 85.6
Dinv17829 Davidia involucrata HOM05D006758 ORTHO05D008326 4.5e-44 181.0 94 89.4
Migut.M01286 Erythranthe guttata HOM05D006758 ORTHO05D008326 4.5e-44 181.0 101 85.1
ECA234G0861 Erigeron canadensis HOM05D006758 ORTHO05D008326 5.8e-44 180.6 101 85.1
HanXRQChr16g0515881 Helianthus annuus HOM05D006758 ORTHO05D008326 5.8e-44 180.6 101 85.1
DCAR_008127 Daucus carota HOM05D006758 ORTHO05D008326 1.3e-43 179.5 101 84.2
DCAR_004197 Daucus carota HOM05D006758 ORTHO05D008326 1.7e-43 179.1 103 84.5
FvH4_3g02640 Fragaria vesca HOM05D006758 ORTHO05D008326 1.7e-43 179.1 104 84.6
Sabra11G0016800 Salix brachista HOM05D006758 ORTHO05D008326 2.2e-43 178.7 101 85.1
ATR0661G232 Amborella trichopoda HOM05D006758 ORTHO05D008326 2.9e-43 178.3 101 82.2
Lsat_1_v5_gn_4_59120 Lactuca sativa HOM05D006758 ORTHO05D008326 2.9e-43 178.3 100 85.0
Actinidia11840 Actinidia chinensis HOM05D006758 ORTHO05D008326 3.8e-43 177.9 101 85.1
Thhalv10023778m.g Eutrema salsugineum HOM05D006758 ORTHO05D008326 3.2e-42 174.9 103 82.5
BcaC04g22349 Brassica carinata HOM05D006758 ORTHO05D008326 4.2e-42 174.5 103 82.5
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 4.2e-42 174.5 103 82.5
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 4.2e-42 174.5 103 82.5
Carub.0002s0329 Capsella rubella HOM05D006758 ORTHO05D008326 4.2e-42 174.5 103 82.5
BcaB07g31284 Brassica carinata HOM05D006758 ORTHO05D008326 7.1e-42 173.7 103 82.5
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 7.1e-42 173.7 103 82.5
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 7.1e-42 173.7 103 82.5
CARHR050560 Cardamine hirsuta HOM05D006758 ORTHO05D008326 7.1e-42 173.7 103 82.5
Mapoly0102s0010 Marchantia polymorpha HOM05D006758 ORTHO05D008326 9.3e-42 173.3 101 81.2
Pp3c2_14210 Physcomitrium patens HOM05D006758 ORTHO05D008326 9.3e-42 173.3 101 82.2
Sp2g02770 Schrenkiella parvula HOM05D006758 ORTHO05D008326 9.3e-42 173.3 103 81.6
Aa31LG1G3210 Aethionema arabicum HOM05D006758 ORTHO05D008326 1.2e-41 172.9 103 81.6
BcaB04g20373 Brassica carinata HOM05D006758 ORTHO05D008326 2.7e-41 171.8 103 80.6
unitig_61.g26114 Utricularia gibba HOM05D006758 ORTHO05D008326 3.5e-41 171.4 127 70.1
AL2G14330 Arabidopsis lyrata HOM05D006758 ORTHO05D008326 6.0e-41 170.6 103 80.6
AT1G61780 Arabidopsis thaliana HOM05D006758 ORTHO05D008326 6.0e-41 170.6 103 80.6
AagrBONN_evm.TU.Sc2ySwM_344.4905 Anthoceros agrestis HOM05D006758 ORTHO05D008326 1.0e-40 169.9 101 79.2
SMO351G0293 Selaginella moellendorffii HOM05D006758 ORTHO05D008326 1.9e-39 165.6 90 81.1
Sc17g0007080 Simmondsia chinensis HOM05D006758 ORTHO05D008326 3.7e-38 161.4 80 91.2
Peaxi162Scf00082g10217 Petunia axillaris HOM05D006758 ORTHO05D008326 3.4e-36 154.8 103 78.6
CSS0030244 Camellia sinensis var. sinensis HOM05D006758 ORTHO05D008326 4.5e-36 154.5 85 85.9
CBR_g45280 Chara braunii HOM05D006758 ORTHO05D008326 4.5e-36 154.5 91 79.1
Ah.09g235270 Amaranthus hybridus HOM05D006758 ORTHO05D008326 5.0e-35 151.0 85 84.7
Hund23506 Selenicereus undatus HOM05D006758 ORTHO05D008326 1.1e-23 113.2 66 84.8
Cre16.g670200 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 1.5e-23 112.8 99 56.6
MCO09G771 Micromonas commoda HOM05D006758 ORTHO05D008326 1.5e-23 112.8 99 55.6
A01p30660 Brassica napus HOM05D006758 ORTHO05D008326 6.1e-17 90.9 43 90.7
A01p30680 Brassica napus HOM05D006758 ORTHO05D008326 2.3e-16 89.0 43 88.4
BraA01t03197Z Brassica rapa HOM05D006758 ORTHO05D008326 2.3e-16 89.0 43 88.4
Cre16.g689376 Chlamydomonas reinhardtii HOM05D006758 ORTHO05D008326 2.0e-15 85.9 81 54.3
MBI16_g27830_MAGBIO Magnolia biondii HOM05D004176 ORTHO05D008326 4.8e-14 81.3 51 72.5
Atru.BG.309.p Acer truncatum HOM05D006758 ORTHO05D008326 7.0e-13 77.4 41 92.7
Haze_06744 Corylus avellana HOM05D006758 ORTHO05D008326 7.0e-13 77.4 50 82.0
FAN25G0357 Fragaria x ananassa HOM05D006758 ORTHO05D008326 7.0e-13 77.4 49 83.7
MBI15_g03894_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 7.0e-13 77.4 51 68.6
HPP92_000849 Vanilla planifolia HOM05D006758 ORTHO05D008326 2.6e-12 75.5 48 83.3
FAN21G3907 Fragaria x ananassa HOM05D006758 ORTHO05D008326 3.5e-12 75.1 57 73.7
MBI02_g21861_MAGBIO Magnolia biondii HOM05D006758 ORTHO05D008326 3.5e-12 75.1 47 85.1
QL05p074940 Quercus lobata HOM05D006758 ORTHO05D008326 5.9e-12 74.3 50 78.0
QL93p0073_0472 Quercus lobata HOM05D006758 ORTHO05D008326 5.9e-12 74.3 50 78.0
Ah.14g088140 Amaranthus hybridus HOM05D000097 ORTHO05D000041 1.0e-11 73.6 49 79.6
vmacro15829 Vaccinium macrocarpon HOM05D006758 ORTHO05D008326 1.0e-11 73.6 47 83.0
SalBow1G3298 Salvia bowleyana HOM05D006758 ORTHO05D008326 1.7e-11 72.8 49 79.6
Gohir.D06G213300 Gossypium hirsutum HOM05D006758 ORTHO05D008326 8.5e-11 70.5 44 81.8
PGSC0003DMG400002083 Solanum tuberosum HOM05D006758 ORTHO05D008326 4.8e-06 54.7 36 77.8


User provided reference genes

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