Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.9e-171 605.9 346 100.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.5e-120 436.8 325 80.0
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 1.1e-110 404.1 333 73.9
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.5e-83 313.9 349 58.5
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 8.6e-79 298.1 304 68.4
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 6.0e-72 275.4 306 57.5
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.1e-69 266.9 361 56.5
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 4.4e-67 259.2 347 56.5
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.9e-67 258.1 355 54.4
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 8.3e-66 255.0 353 49.3
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 8.3e-66 255.0 343 55.7
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.4e-65 254.2 399 53.1
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.9e-65 253.8 298 58.4
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.2e-65 253.1 351 53.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.1e-65 252.7 373 52.0
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.7e-64 250.0 355 55.2
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 7.8e-64 248.4 341 54.0
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.8e-64 248.4 355 54.6
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 3.3e-62 243.0 352 53.7
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 4.3e-62 242.7 365 51.8
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.8e-61 240.0 363 48.8
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 2.8e-61 240.0 325 55.1
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.1e-60 238.0 346 49.4
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.4e-60 237.7 350 54.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.4e-60 237.7 350 54.6
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 3.1e-60 236.5 321 58.3
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 8.9e-60 235.0 318 58.8
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.5e-59 234.2 346 49.1
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.4e-59 232.6 338 53.3
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 7.6e-59 231.9 357 47.9
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 9.9e-59 231.5 350 47.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 3.8e-58 229.6 350 47.7
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.9e-58 229.2 358 48.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 8.4e-58 228.4 363 49.3
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 8.4e-58 228.4 373 51.2
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.4e-57 227.6 368 46.5
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.4e-57 227.6 350 54.6
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 3.2e-57 226.5 340 52.4
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 2.1e-56 223.8 349 53.3
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.1e-56 223.8 351 49.3
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 3.5e-56 223.0 329 47.7
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 3.5e-56 223.0 348 55.7
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 4.6e-56 222.6 362 50.3
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.3e-55 221.1 352 52.8
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 1.3e-55 221.1 348 48.3
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.3e-55 220.3 324 53.1
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 5.1e-55 219.2 324 53.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.1e-54 218.0 349 53.9
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.5e-54 217.6 369 45.0
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 2.5e-54 216.9 346 44.5
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 3.3e-54 216.5 355 53.0
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 5.6e-54 215.7 335 51.0
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.3e-54 215.3 296 57.4
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 7.3e-54 215.3 360 49.4
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.6e-53 213.0 343 52.8
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.4e-52 210.3 351 50.4
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.1e-52 209.9 345 52.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 9.0e-52 208.4 345 52.2
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.5e-51 207.6 362 51.1
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.6e-51 206.8 359 53.2
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 9.9e-51 204.9 332 50.9
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.3e-50 204.5 324 48.8
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.3e-50 204.5 329 53.5
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 2.9e-50 203.4 352 51.4
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.9e-50 203.4 334 45.5
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.9e-50 202.6 357 51.3
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.9e-50 202.6 345 44.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 6.4e-50 202.2 352 51.4
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 8.4e-50 201.8 365 49.9
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 2.4e-49 200.3 327 45.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.2e-49 199.5 356 49.4
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 5.4e-49 199.1 331 49.5
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.4e-49 199.1 350 47.7
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 5.4e-49 199.1 351 45.6
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 7.1e-49 198.7 328 54.0
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 7.1e-49 198.7 380 47.9
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 7.1e-49 198.7 378 48.1
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-48 198.0 345 46.4
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.6e-48 197.6 333 43.5
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.1e-48 197.2 345 43.5
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 2.7e-48 196.8 361 50.1
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 2.7e-48 196.8 361 50.1
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 2.7e-48 196.8 361 50.1
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.7e-48 196.8 349 47.3
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.6e-48 196.1 351 50.4
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 6.0e-48 195.7 347 50.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 7.8e-48 195.3 353 51.0
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.0e-47 194.9 369 48.8
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 3.0e-47 193.4 360 50.6
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 6.6e-47 192.2 339 48.1
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.1e-46 191.4 317 51.4
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.1e-46 191.4 318 51.9
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 3.3e-46 189.9 349 51.6
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 3.3e-46 189.9 350 46.3
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 5.6e-46 189.1 362 45.0
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 9.6e-46 188.3 360 46.9
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.3e-45 188.0 245 51.0
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 3.6e-45 186.4 359 49.6
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 6.2e-45 185.7 326 43.6
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.4e-44 183.7 302 47.0
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.0e-44 183.0 373 43.2
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 9.0e-44 181.8 356 48.0
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.0e-43 180.6 351 47.6
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 8.4e-42 175.3 338 47.9
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 8.4e-42 175.3 336 48.8
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.2e-41 173.3 334 40.7
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 4.2e-41 172.9 415 39.8
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 7.1e-41 172.2 362 45.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.1e-40 170.6 346 43.9
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.6e-40 169.5 283 47.7
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 7.9e-40 168.7 339 38.3
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 8.7e-39 165.2 301 49.5
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.5e-38 164.5 351 45.6
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 4.3e-38 162.9 356 48.0
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.1e-37 160.6 439 38.5
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.2e-37 159.1 355 45.9
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.2e-37 159.1 354 45.5
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 2.4e-36 157.1 324 46.9
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 4.0e-36 156.4 298 47.0
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 9.9e-35 151.8 271 49.8
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-34 151.4 259 49.0
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.8e-34 149.8 280 50.4
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 3.8e-34 149.8 172 54.1
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 4.9e-34 149.4 231 57.6
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.1e-33 148.3 365 36.4
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 1.9e-33 147.5 353 43.3
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.5e-33 146.0 320 47.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.6e-32 144.4 285 41.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.0e-32 142.5 139 57.6
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 7.9e-32 142.1 329 38.9
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.8e-31 141.0 345 43.8
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 7.4e-30 135.6 203 45.8
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.4e-30 135.6 352 40.3
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 1.4e-28 131.3 369 40.9
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 3.1e-28 130.2 140 54.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.2e-26 124.0 326 42.3
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 2.9e-26 123.6 330 37.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 6.5e-26 122.5 161 47.8
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 6.5e-26 122.5 289 40.5
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 5.5e-25 119.4 167 44.9
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.5e-25 119.4 113 56.6
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 2.1e-24 117.5 211 48.3
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 1.3e-23 114.8 166 50.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 5.1e-23 112.8 383 37.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-22 110.2 295 44.4
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 9.7e-22 108.6 288 35.4
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 9.7e-22 108.6 209 40.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.2e-19 101.7 271 37.6
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 9.4e-17 92.0 328 34.1
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 3.6e-16 90.1 368 32.6
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.9e-15 86.7 367 36.8
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.4e-14 82.4 154 37.7
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.4e-12 78.2 381 31.5
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 9.4e-09 65.5 90 45.6


User provided reference genes

Program Settings