Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 7.4e-195 683.7 354 100.0
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 6.8e-140 501.1 356 77.2
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 2.6e-139 499.2 356 76.4
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 1.8e-111 406.8 350 61.7
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 6.5e-98 361.7 418 49.8
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 1.9e-97 360.1 346 55.8
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 1.2e-96 357.5 359 57.1
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.9e-96 354.8 352 58.0
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 2.3e-95 353.2 351 56.1
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 2.3e-95 353.2 361 56.0
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 1.1e-94 350.9 363 52.6
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 1.1e-94 350.9 360 56.4
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.9e-94 350.1 364 55.8
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 2.5e-94 349.7 341 58.1
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 4.3e-94 349.0 363 56.2
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 5.7e-94 348.6 361 56.0
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 7.4e-94 348.2 363 56.2
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 3.7e-93 345.9 362 56.1
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 4.8e-93 345.5 361 55.7
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 4.8e-93 345.5 359 56.3
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 2.4e-92 343.2 343 54.8
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.4e-92 343.2 359 56.0
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 5.3e-92 342.0 347 55.3
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 5.3e-92 342.0 362 54.1
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 6.9e-92 341.7 352 55.4
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 6.9e-92 341.7 352 54.0
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 1.5e-91 340.5 360 53.1
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 1.0e-90 337.8 348 54.0
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 3.8e-90 335.9 361 54.6
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 3.8e-90 335.9 352 51.7
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 6.5e-90 335.1 351 56.1
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 1.9e-89 333.6 352 54.0
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 9.4e-89 331.3 362 54.1
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 1.2e-88 330.9 363 52.9
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 2.1e-88 330.1 349 54.4
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 4.7e-88 328.9 354 54.0
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 7.9e-88 328.2 352 51.4
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 1.1e-86 324.3 345 54.8
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 1.5e-86 323.9 337 54.6
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 2.0e-86 323.6 347 54.2
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 2.0e-86 323.6 347 55.0
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 3.3e-86 322.8 388 50.5
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 2.8e-85 319.7 356 53.7
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 3.7e-85 319.3 343 55.1
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 6.3e-85 318.5 351 52.4
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 1.4e-84 317.4 360 50.3
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 3.1e-84 316.2 351 52.7
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 9.1e-84 314.7 352 52.6
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.0e-83 313.5 355 54.6
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 2.0e-83 313.5 358 52.0
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 2.0e-83 313.5 349 53.0
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.5e-82 308.1 364 48.6
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 8.5e-82 308.1 364 48.6
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 1.1e-81 307.8 358 50.8
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 4.2e-81 305.8 361 50.7
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 5.5e-81 305.4 365 50.4
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 7.2e-81 305.1 340 52.4
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 1.2e-80 304.3 355 50.4
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 1.6e-80 303.9 360 49.2
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 2.7e-80 303.1 359 51.0
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.7e-80 303.1 359 51.3
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 2.7e-80 303.1 249 67.9
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 1.4e-79 300.8 363 50.1
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 1.4e-79 300.8 360 47.8
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 3.9e-79 299.3 356 47.2
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 1.1e-78 297.7 364 46.7
Sopen02g012850 Solanum pennellii HOM05D004334 ORTHO05D004763 2.6e-78 296.6 341 49.6
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 3.3e-78 296.2 346 50.9
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 7.4e-78 295.0 358 51.1
Solyc02g061810.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 7.4e-78 295.0 341 49.6
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.3e-77 294.3 372 47.8
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 1.4e-76 290.8 360 46.4
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.8e-76 290.4 358 50.3
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 1.6e-75 287.3 355 48.2
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 3.5e-75 286.2 357 46.5
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 3.5e-75 286.2 353 49.6
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 2.2e-74 283.5 366 49.5
Duzib147G0009 Durio zibethinus HOM05D004334 ORTHO05D004763 2.9e-74 283.1 292 56.8
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 3.8e-74 282.7 369 48.8
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 1.5e-73 280.8 360 48.1
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 1.9e-73 280.4 350 51.7
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 2.5e-73 280.0 305 56.4
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 3.2e-73 279.6 359 49.6
Actinidia02363 Actinidia chinensis HOM05D004334 ORTHO05D004763 5.5e-73 278.9 296 52.7
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 1.2e-72 277.7 339 48.7
CSS0034111 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 8.0e-72 275.0 298 52.7
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 6.7e-71 271.9 353 48.4
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 8.8e-71 271.6 355 47.3
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 7.5e-70 268.5 359 47.1
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 4.8e-69 265.8 369 46.9
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 9.1e-68 261.5 362 46.7
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 4.5e-67 259.2 366 45.9
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 1.1e-65 254.6 364 45.6
Nitab4.5_0000188g0270 Nicotiana tabacum HOM05D004334 ORTHO05D004763 3.2e-65 253.1 291 52.9
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 7.2e-65 251.9 390 43.3
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 1.2e-64 251.1 348 46.8
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 2.1e-64 250.4 350 46.6
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 8.0e-64 248.4 368 44.6
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 8.0e-64 248.4 368 44.6
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 3.0e-63 246.5 349 43.3
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 8.8e-63 245.0 370 44.3
unitig_699.g19572 Utricularia gibba HOM05D004334 ORTHO05D004763 1.5e-62 244.2 317 47.0
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 3.4e-62 243.0 362 44.5
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 7.5e-62 241.9 346 46.0
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 7.5e-62 241.9 368 44.3
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 2.8e-61 240.0 358 41.1
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 2.8e-61 240.0 364 43.7
HanXRQChr15g0487491 Helianthus annuus HOM05D004334 ORTHO05D004763 4.8e-61 239.2 345 43.2
DCAR_011587 Daucus carota HOM05D004334 ORTHO05D004763 2.3e-58 230.3 334 43.1
Sabra07G0050700 Salix brachista HOM05D004334 ORTHO05D004763 2.3e-58 230.3 348 42.0
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 9.5e-57 224.9 340 41.5
Peaxi162Scf00439g00007 Petunia axillaris HOM05D004334 ORTHO05D004763 2.3e-55 220.3 286 47.6
Lj4A228G17 Lonicera japonica HOM05D004334 ORTHO05D004763 3.4e-54 216.5 254 51.2
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 1.7e-53 214.2 248 52.0
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 3.1e-52 209.9 253 49.8
QL06p052483 Quercus lobata HOM05D004334 ORTHO05D004763 4.1e-52 209.5 135 74.1
Os12g0480000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 5.4e-52 209.1 334 39.5
Nitab4.5_0005413g0010 Nicotiana tabacum HOM05D004334 ORTHO05D004763 4.5e-51 206.1 319 44.2
FAN28G1575 Fragaria x ananassa HOM05D004334 ORTHO05D004763 7.8e-51 205.3 137 73.7
FAN26G3296 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.3e-50 203.8 137 73.7
CDE02G4661 Ceratophyllum demersum HOM05D004334 ORTHO05D004763 6.6e-50 202.2 356 37.1
AUR62026391 Chenopodium quinoa HOM05D004334 ORTHO05D004763 3.6e-48 196.4 183 59.0
Os04g0562000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 8.0e-48 195.3 329 35.9
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 7.5e-46 188.7 185 56.8
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 1.4e-44 184.5 160 60.0
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.4e-44 183.7 262 45.4
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 6.6e-42 175.6 256 44.5
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.9e-41 174.1 162 59.3
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 2.5e-41 173.7 231 45.9
Lsat_1_v5_gn_2_75001 Lactuca sativa HOM05D004334 ORTHO05D004763 1.6e-40 171.0 331 36.6
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 2.1e-40 170.6 251 43.4
Zm00001eb250140 Zea mays HOM05D004334 ORTHO05D004763 2.3e-39 167.2 215 43.3
C01p29130 Brassica napus HOM05D004334 ORTHO05D004763 3.1e-39 166.8 288 41.0
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea HOM05D004334 ORTHO05D004763 1.2e-38 164.9 253 43.1
Nitab4.5_0001310g0110 Nicotiana tabacum HOM05D004334 ORTHO05D004763 2.6e-38 163.7 128 64.8
Zm00001eb187020 Zea mays HOM05D004334 ORTHO05D004763 3.4e-38 163.3 215 42.3
BolC1t02844H Brassica oleracea HOM05D004334 ORTHO05D004763 7.5e-38 162.2 306 38.6
SEGI_01463 Sequoiadendron giganteum HOM05D004334 ORTHO05D004763 7.5e-38 162.2 137 53.3
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 3.7e-37 159.8 253 39.1
BcaC09g50093 Brassica carinata HOM05D004334 ORTHO05D004763 9.2e-36 155.2 335 36.7
Ah.03g134170 Amaranthus hybridus HOM05D004334 ORTHO05D004763 1.2e-32 144.8 234 38.0
BcaNung05551 Brassica carinata HOM05D004334 ORTHO05D004763 1.6e-32 144.4 221 43.9
A01p23480 Brassica napus HOM05D004334 ORTHO05D004763 2.3e-31 140.6 153 50.3
Pp3c11_17220 Physcomitrium patens HOM05D004334 ORTHO05D004763 1.3e-29 134.8 335 30.4
Pp3c2_20610 Physcomitrium patens HOM05D004334 ORTHO05D004763 7.3e-25 119.0 336 31.2
Mapoly0218s0003 Marchantia polymorpha HOM05D004334 ORTHO05D004763 3.1e-23 113.6 343 29.2
HPP92_022390 Vanilla planifolia HOM05D004334 ORTHO05D004763 1.2e-22 111.7 129 45.0
COL.COLO4_22515 Corchorus olitorius HOM05D004334 ORTHO05D004763 2.6e-22 110.5 140 52.9
Cpa.g.sc6.335 Carica papaya HOM05D004334 ORTHO05D004763 6.4e-21 105.9 160 40.0
QL10p037295 Quercus lobata HOM05D004334 ORTHO05D004763 6.0e-19 99.4 102 52.9
SMO347G0399 Selaginella moellendorffii HOM05D004334 ORTHO05D004763 6.0e-19 99.4 325 28.3
Pp3c1_15780 Physcomitrium patens HOM05D004334 ORTHO05D004763 1.3e-18 98.2 332 28.9
PGSC0003DMG402008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 3.3e-17 93.6 60 65.0
Actinidia22928 Actinidia chinensis HOM05D004334 ORTHO05D004763 8.1e-16 89.0 79 58.2
Sabra07G0050800 Salix brachista HOM05D004334 ORTHO05D004763 1.3e-13 81.6 110 45.5
SEGI_05177 Sequoiadendron giganteum HOM05D004334 ORTHO05D004763 4.9e-13 79.7 101 39.6
PRCOL_00005340 Prasinoderma coloniale HOM05D004334 ORTHO05D004763 1.2e-11 75.1 139 31.7
AagrBONN_evm.TU.Sc2ySwM_117.683 Anthoceros agrestis HOM05D000571 ORTHO05D004763 2.7e-11 73.9 293 28.0
MBI08_g09580_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 3.0e-10 70.5 76 47.4
Aa31LG1G14530 Aethionema arabicum HOM05D004334 ORTHO05D004763 4.8e-08 63.2 75 44.0
PGSC0003DMG403008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 6.2e-08 62.8 64 56.2
MCO11G403 Micromonas commoda HOM05D000571 ORTHO05D004763 2.4e-07 60.8 112 32.1
Nitab4.5_0001310g0100 Nicotiana tabacum HOM05D004334 ORTHO05D004763 9.0e-07 58.9 45 62.2


User provided reference genes

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