Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 7.7e-206 720.3 379 100.0
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 7.8e-174 614.0 382 85.3
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 6.6e-165 584.3 379 81.5
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 1.6e-134 483.4 379 72.3
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 3.6e-131 472.2 378 64.3
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 9.3e-127 457.6 338 68.0
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 2.5e-124 449.5 343 65.9
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 9.6e-124 447.6 334 66.5
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.2e-123 444.9 334 66.2
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 2.4e-122 443.0 374 61.8
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 3.1e-122 442.6 379 63.3
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 5.3e-122 441.8 342 64.6
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 8.4e-120 434.5 291 71.1
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 1.1e-119 434.1 333 65.2
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 5.5e-119 431.8 335 66.3
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 7.1e-119 431.4 329 65.0
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.2e-118 430.6 322 66.1
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 3.5e-118 429.1 295 69.8
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 6.0e-118 428.3 370 61.4
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.0e-117 427.6 333 67.3
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 1.1e-116 424.1 341 61.6
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.5e-116 422.9 335 63.6
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.3e-115 420.6 323 65.0
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 3.7e-115 419.1 366 60.9
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 4.8e-115 418.7 289 69.2
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 6.2e-115 418.3 335 63.6
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.1e-114 417.5 370 58.1
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 1.1e-114 417.5 359 61.3
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 6.9e-114 414.8 341 60.7
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 1.2e-113 414.1 335 61.2
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 2.2e-112 409.8 374 56.1
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 2.2e-112 409.8 374 56.1
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 2.2e-112 409.8 293 68.3
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 2.9e-112 409.5 335 63.6
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 6.5e-112 408.3 344 64.2
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 1.4e-111 407.1 287 67.2
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.5e-111 406.4 287 67.9
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 2.5e-111 406.4 286 68.2
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.5e-111 406.4 328 63.4
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 5.5e-111 405.2 335 62.4
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 9.3e-111 404.4 287 67.9
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.2e-110 404.1 335 62.1
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 1.2e-110 404.1 309 68.6
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 1.6e-110 403.7 339 57.8
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 4.6e-110 402.1 337 61.1
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 7.9e-110 401.4 316 63.3
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.8e-109 400.2 291 66.7
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 2.3e-109 399.8 333 58.9
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 2.3e-109 399.8 380 57.1
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 3.0e-109 399.4 356 60.1
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 3.0e-109 399.4 348 57.5
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.9e-109 399.1 336 60.1
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 5.1e-109 398.7 292 65.8
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 6.7e-109 398.3 292 66.4
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 1.1e-108 397.5 335 60.3
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.5e-108 397.1 332 59.3
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.5e-108 397.1 337 59.9
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 4.3e-108 395.6 292 65.8
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 4.3e-108 395.6 292 65.8
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 5.7e-108 395.2 339 59.0
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 7.4e-108 394.8 331 60.4
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 1.6e-107 393.7 317 63.1
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 1.6e-107 393.7 332 59.0
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 2.8e-107 392.9 287 65.5
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 6.3e-107 391.7 339 59.3
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 1.4e-106 390.6 338 59.2
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 5.3e-106 388.7 339 58.7
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 1.5e-105 387.1 339 58.7
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.0e-105 386.7 293 63.5
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 7.6e-105 384.8 373 55.8
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 1.0e-104 384.4 379 57.3
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.3e-104 384.0 347 57.1
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 2.2e-104 383.3 341 58.4
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 2.9e-104 382.9 376 54.0
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 5.0e-104 382.1 333 59.5
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 8.5e-104 381.3 348 61.5
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 3.2e-103 379.4 346 55.2
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.2e-102 377.5 366 53.6
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 3.6e-102 375.9 344 57.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 4.1e-98 362.5 289 58.5
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 1.0e-96 357.8 279 63.4
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 2.5e-95 353.2 289 58.8
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 2.5e-95 353.2 276 62.0
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 6.1e-94 348.6 381 49.1
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 6.7e-93 345.1 264 62.5
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 7.4e-92 341.7 291 57.4
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.7e-91 340.5 299 56.2
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 3.7e-91 339.3 263 60.8
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 3.4e-89 332.8 342 55.6
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 8.5e-88 328.2 231 68.8
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 1.9e-87 327.0 345 48.7
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 7.2e-87 325.1 285 55.1
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 1.0e-85 321.2 297 55.2
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 3.9e-85 319.3 225 71.1
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.0e-77 294.7 292 51.4
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 4.4e-76 289.3 310 47.7
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.3e-72 277.7 291 49.1
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.3e-72 277.7 288 48.3
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 5.5e-71 272.3 289 47.8
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 1.2e-68 264.6 231 55.0
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 1.2e-65 254.6 214 59.8
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.8e-56 223.0 338 40.2
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 3.8e-56 223.0 168 65.5
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 4.3e-55 219.5 295 44.4
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 1.2e-54 218.0 362 42.8
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 2.8e-54 216.9 295 44.4
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 6.1e-54 215.7 224 53.1
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 5.2e-53 212.6 174 60.3
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 2.6e-52 210.3 233 51.1
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 9.8e-52 208.4 211 51.7
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 4.9e-51 206.1 300 41.3
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 7.0e-50 202.2 205 56.1
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.6e-46 189.9 115 74.8
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 5.2e-45 186.0 288 38.9
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.5e-44 184.5 300 37.7
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 3.4e-44 183.3 111 70.3
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 5.6e-39 166.0 166 49.4
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 7.3e-39 165.6 114 68.4
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.5e-36 157.9 110 61.8
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 1.6e-33 147.9 130 60.8
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.1e-31 141.7 179 48.0
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.1e-30 137.5 259 35.5
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 1.4e-26 124.8 160 40.0
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 7.3e-23 112.5 64 75.0
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 1.6e-22 111.3 63 77.8
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 1.8e-21 107.8 65 73.8
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 5.3e-21 106.3 64 71.9
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 1.2e-20 105.1 53 84.9
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 4.4e-20 103.2 126 41.3
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.8e-19 100.1 64 70.3
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 6.0e-17 92.8 55 72.7
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 5.1e-16 89.7 140 35.7
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 2.0e-12 77.8 104 52.9
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 9.3e-10 68.9 60 63.3
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 2.7e-09 67.4 60 63.3
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 1.0e-08 65.5 78 43.6
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 4.3e-07 60.1 53 49.1


User provided reference genes

Program Settings