Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 8.0e-42 173.3 87 100.0
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 2.3e-36 155.2 87 88.5
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 3.6e-34 147.9 87 83.9
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 2.8e-26 121.7 87 72.4
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 1.8e-25 119.0 88 61.4
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 1.5e-24 115.9 86 62.8
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 4.4e-24 114.4 87 62.1
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 1.3e-23 112.8 72 75.0
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 2.9e-23 111.7 73 71.2
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 2.9e-23 111.7 73 71.2
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 3.7e-23 111.3 81 65.4
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 3.7e-23 111.3 85 65.9
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 4.9e-23 110.9 83 66.3
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 8.3e-23 110.2 81 63.0
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 8.3e-23 110.2 81 63.0
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 1.1e-22 109.8 82 65.9
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 1.4e-22 109.4 71 69.0
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.4e-22 109.4 81 63.0
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 1.4e-22 109.4 81 63.0
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 1.4e-22 109.4 73 67.1
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 3.2e-22 108.2 71 66.2
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 4.1e-22 107.8 73 67.1
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 5.4e-22 107.5 81 61.7
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 5.4e-22 107.5 72 68.1
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 7.1e-22 107.1 71 66.2
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 7.1e-22 107.1 71 66.2
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 7.1e-22 107.1 81 63.0
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 1.2e-21 106.3 83 60.2
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 1.6e-21 105.9 80 65.0
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 1.6e-21 105.9 71 67.6
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 2.1e-21 105.5 69 68.1
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 2.7e-21 105.1 71 66.2
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 6.0e-21 104.0 71 66.2
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 6.0e-21 104.0 69 69.6
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 6.0e-21 104.0 72 68.1
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 7.8e-21 103.6 83 59.0
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.3e-20 102.8 71 66.2
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.3e-20 102.8 86 55.8
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 1.7e-20 102.4 71 64.8
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 1.7e-20 102.4 78 62.8
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 1.7e-20 102.4 83 56.6
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 1.7e-20 102.4 78 62.8
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 3.9e-20 101.3 72 65.3
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 5.1e-20 100.9 78 62.8
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 5.1e-20 100.9 83 59.0
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 8.6e-20 100.1 73 65.8
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 1.1e-19 99.8 73 64.4
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 1.5e-19 99.4 84 59.5
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.5e-19 98.6 71 62.0
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 2.5e-19 98.6 74 60.8
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 2.5e-19 98.6 86 54.7
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 3.3e-19 98.2 82 57.3
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 3.3e-19 98.2 57 78.9
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 4.3e-19 97.8 72 63.9
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 7.3e-19 97.1 86 54.7
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 9.5e-19 96.7 71 62.0
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 9.5e-19 96.7 82 57.3
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 1.2e-18 96.3 73 61.6
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 1.6e-18 95.9 71 62.0
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 3.6e-18 94.7 72 61.1
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 3.6e-18 94.7 66 63.6
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 1.1e-17 93.2 86 55.8
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 1.1e-17 93.2 82 56.1
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 1.4e-17 92.8 72 62.5
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 3.1e-17 91.7 63 71.4
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 3.1e-17 91.7 72 59.7
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 6.8e-17 90.5 86 50.0
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.6e-16 88.6 69 56.5
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 9.9e-16 86.7 81 54.3
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 1.7e-15 85.9 73 57.5
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 3.8e-15 84.7 60 58.3
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 3.8e-15 84.7 60 58.3
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 4.9e-15 84.3 60 68.3
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 8.4e-15 83.6 74 54.1
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 2.4e-14 82.0 79 44.3
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 4.2e-14 81.3 55 63.6
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 6.0e-13 77.4 53 60.4
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 1.3e-12 76.3 60 60.0
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 3.0e-12 75.1 53 64.2
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 3.9e-12 74.7 68 45.6
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 2.5e-11 72.0 54 57.4
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 4.3e-11 71.2 58 62.1
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 4.3e-11 71.2 57 54.4
Oeu060284.1 Olea europaea HOM05D007707 ORTHO05D009711 9.6e-11 70.1 82 50.0
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 4.8e-10 67.8 53 58.5
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 3.1e-09 65.1 37 75.7
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 2.6e-08 62.0 36 69.4
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 2.6e-08 62.0 52 57.7
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 2.6e-08 62.0 54 61.1
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 1.7e-07 59.3 48 52.1
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 6.4e-07 57.4 37 70.3


User provided reference genes

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